Structural, stratigraphic and sedimentological characterisation of a wide rift system : The Triassic rift system of the Central Atlantic Domain

Acknowledgments The authors would like to thank Shell E&P Rijswijk, for supporting this research. The authors are grateful to Pat Shannon, Catherine Baudon and Dominique Frizon de Lamotte for many discussions on rift processes. We would like to thank Steven Bergman for thorough comments on an early version of the paper, and Chris Morley and an anonymous reviewer for sharing ideas and references for writing a better paper

Anatomia da madeira e dendrocronologia de espécies arbóreas do gênero Machaerium Pers. (Leguminosae-Papilionoideae)

Machaerium é um dos maiores gêneros arbóreos tropicais de leguminosas, com cerca de 130 espécies com distribuição predominantemente neotropical e centro de diversidade no Brasil, onde ocorrem cerca de 80 espécies. O gênero ocorre em todos os domínios fitogeográficos do país, porém a Mata Atlântica e a Floresta Amazônica possuem os maiores índices de riqueza e endemismo. As espécies do gênero estão classificadas em cinco seções infragenéricas, que se baseiam principalmente na forma e venação dos folíolos e na presença de estípulas espinescentes. Entretanto, esta classificação tem sido questionada por alguns autores, principalmente quando comparada com análises filogenéticas. Dessa forma, surge a necessidade de buscar outros caracteres que auxiliem na delimitação das espécies e que permitam uma reavaliação na classificação nfragenéricas, além de conhecer o potencial para estudos dendrocronológicos das espécies em um bioma tão rico e ameaçado como a Mata Atlântica. O presente trabalho visou estudar a anatomia do lenho de onze espécies arbóreas de Machaerium a fim de verificar a consistência das seções infragenéricas, fornecer caracteres diagnósticos para a delimitação das espécies e caracterizar as pontoações intervasculares ornamentadas, para verificar seu potencial diagnóstico no gênero em questão. Além disso, analisar a periodicidade de crescimento e a influência dos fatores climáticos no crescimento de Machaerium incorruptibile, espécie endêmica da Mata Atlântica. As amostras foram coletadas através de método não destrutivo e processadas seguindo os métodos usuais para anatomia do lenho, microscopia eletrônica de varredura e dendrocronologia. As espécies apresentaram as características anatômicas descritas para a família Leguminosae e para a subfamília Papilionoideae. A presença de faixas de parênquima não lignificado, fibras de paredes delgadas e raios irregularmente estratificados foram importantes na separação de Machaerium hirtum das outras dez espécies. As dez espécies restantes foram separadas entre si pelos dados quantitativos do lenho, principalmente diâmetro e frequência de vasos, e também pelos caracteres morfológicos das pontoações ornamentadas, como a projeção ou não das ornamentações na abertura da pontoação. A anatomia da madeira não correspondeu as seções infragenéricas tradicionalmente tratadas para o gênero. Para a dendrocronologia os dados foram analisados com uso do software ARSTAN e foi construída uma cronologia para M. incorruptibile. As cronologias foram analisadas juntamente com os dados de precipitação e temperatura, onde observou-se uma correlação significativa com a temperatura. A largura dos anéis de crescimento foi correlacionada positivamente com a temperatura média da primavera, época em que a temperatura se encontra mais amena e, negativamente com a temperatura média do verão, onde as temperaturas são mais altas. Também houve correlação negativa entre os eventos mais severos de El Niño e a largura dos anéis de crescimento, demonstrando o efeito deste fenômeno no crescimento da população arbórea, como encontrado em outras espécies tropicais.

Mechanisms of midlatitude cross-tropopause transport using a potential vorticity budget approach

[ 1] A potential vorticity (PV) budget method has been used to attribute vertical transport across the near-tropopause ( 1 PVU surface) in extratropical weather systems to radiative, latent heating and cooling, and mixing processes. Sources and sinks of PV due to nonconservative processes are calculated online and advected as passive tracers. There is reasonable agreement between the spatial distribution of transport determined from the PV budget method and the transport across the 1 - 2 PVU zone from a passive tracer and trajectories, but different aspects of exchange can be diagnosed with each method. Stratosphere-to-troposphere transport occurred in the broad upper level PV anomalies and was attributed mainly to latent heating and cooling processes; troposphere-to-stratosphere transport occurred toward the tail of a PV filament and in a ridge region and was attributed mainly to radiative processes. The contribution of mixing processes to transport was comparatively small. Using the PV budget method, the domain integrated exchange across the 1 PVU surface was from stratosphere to troposphere, and the magnitude of 1 x 10(15) kg over a 2 day winter integration in a large North Atlantic domain is consistent with stratosphere-troposphere exchange calculations from other studies. This exchange arises from an approximate balance between the dominant stratosphere-to-troposphere transport due to latent heating and cooling processes and troposphere-to-stratosphere transport due to radiative processes. The direction of transport across the tropopause in a fold was found to be critically dependent on the PV surface considered to represent the tropopause.

Anurans of a seasonally dry tropical forest: Morro do Diabo State Park, São Paulo state, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Diversidade, padrões espaciais e temporais de anfíbios anuros em uma floresta estacional semidecidual atlântica, parque estadual do Morro do Diabo (PEMD)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

O estado da arte das vocalizações de anfíbios anuros da Mata Atlântica

The vocals are the most conspicuous means of communication between frogs and can express evolutionary relationships among species. Call descriptions of frogs, in general, not standard acoustic parameters which are greatly diversified and usually restricted to comparisons between closely related taxa. The Atlantic Forest is considered one of the biodiversity hotspots of the world, however, it appears that the number of species to be known is still very large. To anurans from this Brazilian Domain, vocalizations are complex and can vary intra and interpopulations. Thus, we presented a quantitative and qualitative analysis of the work descriptions of anuran advertisement call from the Atlantic Forest, available in the literature so far. The frog species from this Domain and their descriptions of the advertisement call have been raised in the literature, organized into families and threat category IUCN Red List Threatened Species. The analysis of the descriptions were made based on the presence of preset parameters. It was observed that the species which the advertisement call is described within the standard are expected within the Brazilian Atlantic Domain, but efforts to describe the advertisement call of frogs of the Atlantic are concentrated in non-threatened species. Among the descriptions works, there is a large discrepancy between the information presented, giving preference to the use of abiotic data in this kind of work, to the detriment of biotic data about choir where the songs were recorded. The results point to the need for advancements in the descriptions of the advertisement of endangered species or to those with deficient information on their conservation status in the Atlantic Forest, and also for greater communication between works that describe vocalizations of frogs. It will be important to know about the state of the art of descriptions works of frogs in other Brazilian Domains, and relate this information with knowledge...

Epifitismo vascular em duas fisionomias vegetais, floresta paludosa e floresta estacional semidecidual no município de Botucatu, estado de São Paulo, Brasil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

The South Atlantic Alliance: A southeastern U.S. state Governors initiative to address opportunities and challenges embodied in the region's coastal and ocean domain

The pressures placed on the natural, environmental, economic, and cultural sectors from continued growth, population shifts, weather and climate, and environmental quality are increasing exponentially in the southeastern U.S. region. Our growing understanding of the relationship of humans with the marine environment is leading us to explore new ecosystem-based approaches to coastal management, marine resources planning, and coastal adaptation that engages multiple state jurisdictions. The urgency of the situation calls for coordinated regional actions by the states, in conjunction with supporting partners and leveraging a diversity of resources, to address critical issues in sustaining our coastal and ocean ecosystems and enhancing the quality of life of our citizens. The South Atlantic Alliance (www.southatlanticalliance.org) was formally established on October 19, 2009 to “implement science-based policies and solutions that enhance and protect the value of coastal and ocean resources of the southeastern United States which support the region's culture and economy now and for future generations.” The Alliance, which includes North Carolina, South Carolina, Georgia, and Florida, will provide a regional mechanism for collaborating, coordinating, and sharing information in support of resource sustainability; improved regional alignment; cooperative planning and leveraging of resources; integrated research, observations, and mapping; increased awareness of the challenges facing the South Atlantic region; and inclusiveness and integration at all levels. Although I am preparing and presenting this overview of the South Atlantic Alliance and its current status, there are a host of representatives from agencies within the four states, universities, NGOs, and ongoing southeastern regional ocean and coastal programs that are contributing significant time, expertise, and energy to the success of the Alliance; information presented herein and to be presented in my oral presentation was generated by the collaborative efforts of these professionals. I also wish to acknowledge the wisdom and foresight of the Governors of the four states in establishing this exciting regional ocean partnership. (PDF contains 4 pages)

Bird species diversity in the Atlantic Forest of Brazil is not explained by the Mid-domain Effect

The Atlantic Forest is an excellent case study for the elevational diversity of birds, and some inventories along elevational gradients have been carried out in Brazil. Since none of these studies explain the patterns of species richness with elevation, we herein review all Brazilian studies on bird elevational diversity, and test a geometric constraint null model that predicts a unimodal species-altitude curve, the Mid-domain Effect (MDE). We searched for bird inventories in the literature and also analysed our own survey data using limited-radius point counts along an 800 m elevational gradient in the state of São Paulo, Brazil. We found 10 investigations of elevational diversity of Atlantic Forest birds and identified five different elevational patterns: monotonic decreasing diversity, constant at low elevations, constant at low elevations but increasing towards the middle, and two undescribed patterns for Atlantic Forest birds, trough-shaped and increasing diversity. The average MDE fit was low (r² = 0.31) and none of the MDE predictions were robust across all gradients. Those studies with good MDE model fits had obvious sampling bias. Although it has been proposed that the MDE may be positively associated with the elevational diversity of birds, it does not fit the Brazilian Atlantic Forest bird elevational diversity.

Labile Fe(II) concentrations in the Atlantic sector of the Southern Ocean along a transect from the subtropical domain to the Weddell Sea Gyre

[EN]Labile Fe(II) distributions were investigated in the Sub-Tropical South Atlantic and the Southern Ocean during the BONUS-GoodHope cruise from 34 to 57_ S (February? March 2008). Concentrations ranged from below the detection limit (0.009 nM) to values as high 5 as 0.125 nM. In the surface mixed layer, labile Fe(II) concentrations were always higher than the detection limit, with values higher than 0.060nM south of 47_ S, representing between 39% and 63% of dissolved Fe (DFe). Biological production was evidenced. At intermediate depth, local maxima were observed, with the highest values in the Sub-Tropical domain at around 200 m, and represented more than 70% of DFe. Remineralization processes were likely responsible for those sub-surface maxima. Below 1500 m, concentrations were close to or below the detection limit, except at two stations (at the vicinity of the Agulhas ridge and in the north of the Weddell Sea Gyre) where values remained as high as _0.030?0.050 nM. Hydrothermal or sediment inputs may provide Fe(II) to these deep waters. Fe(II) half life times (t1/2) at 4 _C were measured in the upper and deep waters and ranged from 2.9 to 11.3min, and from 10.0 to 72.3 min, respectively. Measured values compared quite well in the upper waters with theoretical values from two published models, but not in the deep waters. This may be due to the lack of knowledge for some parameters in the models and/or to organic complexation of Fe(II) that impact its oxidation rates. This study helped to considerably increase the Fe(II) data set in the Ocean and to better understand the Fe redox cycle.

Two cathelicidin genes are present in both rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar)

Further to the previous finding of the rainbow trout rtCATH_1 gene, this paper describes three more cathelicidin genes found in salmonids: two in Atlantic salmon, named asCATH_1 and asCATH_2, and one in rainbow trout, named rtCATH_2. All the three new salmonid cathelicidin genes share the common characteristics of mammalian cathelicidin genes, such as consisting of four exons and possessing a highly conserved preproregion and four invariant cysteines clustered in the C-terminal region of the cathelin-like domain. The asCATH_1 gene is homologous to the rainbow trout rtCATH_1 gene, in that it possesses three repeat motifs of TGGGGGTGGC in exon IV and two cysteine residues in the predicted mature peptide, while the asCATH_2 gene and rtCATH_2 gene are homologues of each other, with 96% nucleotide identity. Salmonid cathelicidins possess the same elastase-sensitive residue, threonine, as hagfish cathelicidins and the rabbit CAP18 molecule. The cleavage site of the four salmonid cathelicidins is within a conserved amino acid motif of QKIRTRR, which is at the beginning of the sequence encoded by exon W. Two 36-residue peptides corresponding to the core part of rtCATH_1 and rtCATH_2 were chemically synthesized and shown to exhibit potent antimicrobial activity. rtCATH_2 was expressed constitutively in gill, head kidney, intestine, skin and spleen, while the expression of rtCATH_1 was inducible in gill, head kidney, and spleen after bacterial challenge. Four cathelicidin genes have now been characterized in salmonids and two were identified in hagfish, confirming that cathelicidin genes evolved early and are likely present in all vertebrates.

Rapid biogeographical plankton shifts in the North Atlantic Ocean

Large-scale biogeographical changes in the biodiversity of a key zooplankton group (calanoid copepods) were detected in the north-eastern part of the North Atlantic Ocean and its adjacent seas over the period 1960–1999. These findings provided key empirical evidence for climate change impacts on marine ecosystems at the regional to oceanic scale. Since 1999, global temperatures have continued to rise in the region. Here, we extend the analysis to the period 1958–2005 using all calanoid copepod species assemblages (nine species assemblages based on an analysis including a total of 108 calanoid species or taxa) and show that this phenomenon has been reinforced in all regions. Our study reveals that the biodiversity of calanoid copepods are responding quickly to sea surface temperature (SST) rise by moving geographically northward at a rapid rate up to about 23.16 km yr−1. Our analysis suggests that nearly half of the increase in sea temperature in the northeast Atlantic and adjacent seas is related to global temperature rises (46.35% of the total variance of temperature) while changes in both natural modes of atmospheric and oceanic circulation explain 26.45% of the total variance of temperature. Although some SST isotherms have moved northwards by an average rate of up to 21.75 km yr−1 (e.g. the North Sea), their movement cannot fully quantify all species assemblage shifts. Furthermore, the observed rates of biogeographical movements are far greater than those observed in the terrestrial realm. Here, we discuss the processes that may explain such a discrepancy and suggest that the differences are mainly explained by the fluid nature of the pelagic domain, the life cycle of the zooplankton and the lesser anthropogenic influence (e.g. exploitation, habitat fragmentation) on these organisms. We also hypothesize that despite changes in the path and intensity of the oceanic currents that may modify quickly and greatly pelagic zooplankton species, these organisms may reflect better the current impact of climate warming on ecosystems as terrestrial organisms are likely to significantly lag the current impact of climate change.

Surface Salinity in the North Atlantic Subtropical Gyre During the STRASSE/SPURS Summer 2012 Cruise

We investigated a 100 × 100 km high-salinity region of the North Atlantic subtropical gyre during the Sub-Tropical Atlantic Surface Salinity Experiment/Salinity Processes in the Upper-ocean Regional Study (STRASSE/SPURS) cruise from August 21, 2012, to September 9, 2012. Results showed great variability in sea surface salinity (SSS; over 0.3 psu) in the mesoscale, over 7 cm of total evaporation, and little diapycnal mixing below 36 m depth, the deepest mixed layers encountered. Strong currents in the southwestern part of the domain, and the penetration of freshwater, suggest that advection contributed greatly to salinity evolution. However, it was further observed that a smaller cyclonic structure tucked between the high SSS band and the strongest currents contributed to the transport of high SSS water along a narrow front. Cross-frontal transport by mixing is also a possible cause of summertime reduction of SSS. The observed structure was also responsible for significant southward salt transport over more than 200 km.

Source as a controlling factor on the quality and interpretation of sediment magnetic records from the northern North Atlantic

Magnetic properties of eight particle size ranges from nine locations in Iceland and 26 locations in southern Greenland reveal the importance of source variation for our understanding of paleomagnetic and environmental magnetic records in the marine environment. These terrestrial samples show varying degrees of particle size dependence with all samples showing that the silt fraction possesses greater concentrations of ferrimagnetic minerals than either clay or sand. Fine pseudo-single domain (PSD) size magnetic grains dominate the magnetic assemblage of all Icelandic fractions. In contrast, Greenlandic samples possess greater variation in magnetic grain size; only fine silt and clay are as magnetically fine as the Icelandic PSD grains, while Greenlandic silts and sands are dominated by coarser PSD and multi-domain grains. These observations from potential marine sediment sources suggest that the silt size fraction is a likely driver for much of the concentration-dependent parameters derived from bulk magnetic records and that the magnetic grain size of the silt fraction can be used to discriminate between Icelandic and Greenlandic sources. Using these results to examine magnetic grain size records from marine sediment cores collected across the northern North Atlantic suggests that source, not just transport-controlled physical grain-size, has a significant impact on determining the magnetic grain size at a particular location. Homogeneity of magnetic grain size in Icelandic sediments at least partially explains the consistent quality of paleomagnetic records derived from cores surrounding Iceland and their ability to buffer large environmental changes. © 2013 Elsevier B.V.

Sensitivity of simulated regional Arctic climate to the choice of coupled model domain

The climate over the Arctic has undergone changes in recent decades. In order to evaluate the coupled response of the Arctic system to external and internal forcing, our study focuses on the estimation of regional climate variability and its dependence on large-scale atmospheric and regional ocean circulations. A global ocean–sea ice model with regionally high horizontal resolution is coupled to an atmospheric regional model and global terrestrial hydrology model. This way of coupling divides the global ocean model setup into two different domains: one coupled, where the ocean and the atmosphere are interacting, and one uncoupled, where the ocean model is driven by prescribed atmospheric forcing and runs in a so-called stand-alone mode. Therefore, selecting a specific area for the regional atmosphere implies that the ocean–atmosphere system can develop ‘freely’ in that area, whereas for the rest of the global ocean, the circulation is driven by prescribed atmospheric forcing without any feedbacks. Five different coupled setups are chosen for ensemble simulations. The choice of the coupled domains was done to estimate the influences of the Subtropical Atlantic, Eurasian and North Pacific regions on northern North Atlantic and Arctic climate. Our simulations show that the regional coupled ocean–atmosphere model is sensitive to the choice of the modelled area. The different model configurations reproduce differently both the mean climate and its variability. Only two out of five model setups were able to reproduce the Arctic climate as observed under recent climate conditions (ERA-40 Reanalysis). Evidence is found that the main source of uncertainty for Arctic climate variability and its predictability is the North Pacific. The prescription of North Pacific conditions in the regional model leads to significant correlation with observations, even if the whole North Atlantic is within the coupled model domain. However, the inclusion of the North Pacific area into the coupled system drastically changes the Arctic climate variability to a point where the Arctic Oscillation becomes an ‘internal mode’ of variability and correlations of year-to-year variability with observational data vanish. In line with previous studies, our simulations provide evidence that Arctic sea ice export is mainly due to ‘internal variability’ within the Arctic region. We conclude that the choice of model domains should be based on physical knowledge of the atmospheric and oceanic processes and not on ‘geographic’ reasons. This is particularly the case for areas like the Arctic, which has very complex feedbacks between components of the regional climate system.