An R package for the integrated analysis of metabolomics and spectral data

Recently, there has been a growing interest in the field of metabolomics, materialized by a remarkable growth in experimental techniques, available data and related biological applications. Indeed, techniques as Nuclear Magnetic Resonance, Gas or Liquid Chromatography, Mass Spectrometry, Infrared and UV-visible spectroscopies have provided extensive datasets that can help in tasks as biological and biomedical discovery, biotechnology and drug development. However, as it happens with other omics data, the analysis of metabolomics datasets provides multiple challenges, both in terms of methodologies and in the development of appropriate computational tools. Indeed, from the available software tools, none addresses the multiplicity of existing techniques and data analysis tasks. In this work, we make available a novel R package, named specmine, which provides a set of methods for metabolomics data analysis, including data loading in different formats, pre-processing, metabolite identification, univariate and multivariate data analysis, machine learning, and feature selection. Importantly, the implemented methods provide adequate support for the analysis of data from diverse experimental techniques, integrating a large set of functions from several R packages in a powerful, yet simple to use environment. The package, already available in CRAN, is accompanied by a web site where users can deposit datasets, scripts and analysis reports to be shared with the community, promoting the efficient sharing of metabolomics data analysis pipelines.

[Reports] Thirteenth census of the United States taken in the year 1910.

principal industries.--v. 11. Mines and quarries, 1909: General report and analysis.

POPREP: a generic report for population management

Genetic variation provides a basis upon which populations can be genetically improved. Management of animal genetic resources in order to minimize loss of genetic diversity both within and across breeds has recently received attention at different levels, e. g., breed, national and international levels. A major need for sustainable improvement and conservation programs is accurate estimates of population parameters, such as rate of inbreeding and effective population size. A software system (POPREP) is presented that automatically generates a typeset report. Key parameters for population management, such as age structure, generation interval, variance in family size, rate of inbreeding, and effective population size form the core part of this report. The report includes a default text that describes definition, computation and meaning of the various parameters. The report is summarized in two pdf files, named Population Structure and Pedigree Analysis Reports. In addition, results (e. g., individual inbreeding coefficients, rate of inbreeding and effective population size) are stored in comma-separate-values files that are available for further processing. Pedigree data from eight livestock breeds from different species and countries were used to describe the potential of POPREP and to highlight areas for further research.

VFM Aduit of Statutory Residential Homes for Older People - Executive Summary - March 2007 (PDF 430 KB)

VFM Audit of Statutory Residential Homes for Older People - Executive Summary (March 2007)

VFM Audit of Statutory Residential Homes for Older People - March 2007 (PDF 1314 KB)

VFM Audit of Statutory Residential Homes for Older People - Final Report (March 2007)

Survey of Injecting Drug Users: Summary (PDF 57.6 KB)

Survey of Injecting Drug Users: Summary of the findings for 2004/05 from the four collaborating centres in Northern Ireland

Audit of Intermediate Care Executive Summary (PDF 491 KB)

Audit of Intermediate Care Executive Summary

Audit of Maternity Services Executive Summary( PDF 915 KB)

Audit of Maternity Services Executive Summary

Audit of Intermediate Care (PDF 4422 KB)

Audit of Intermediate Care Final Report - October 2006

Audit of Acute Maternity Services (PDF 4894 KB)

Audit of Acute Maternity Services Final Report - October 2006

Disability Equipment Services in Northern Ireland Regional Summary (PDF 1815 KB)

March 2003 - main findings of the study, key recommendations and the way forward