Expression and localization of a novel phosducin-like protein from amphioxus Branchiostoma belcheri

A full length amphioxus cDNA, encoding a novel phosducin-like protein (Amphi-PhLP), was identified for the first time from the gut cDNA library of Branchiostoma belcheri. It is comprised of 1 550 bp and an open reading frame (ORF) of 241 amino acids, with a predicted molecular mass of approximately 28 kDa. In situ hybridization histochemistry revealed a tissue-specific expression pattern of Amphi-PhLP with the high levels in the ovary, and at a lower level in the hind gut and testis, hepatic caecum, gill, endostyle, and epipharyngeal groove, while it was absent in the muscle, neural tube and notochord. In the Chinese Hamster Ovary (CHO) cells transfected with the expression plasmid pEGFP-N1/Amphi-PhLP, the fusion protein was targeted in the cytoplasm of CHO cells, suggesting that Amphi-PhLP is a cytosolic protein. This work may provide a framework for further understanding of the physiological function of Amphi-PhLP in B. belcheri.

Construction of a BAC library for Chinese amphioxus Branchiostoma belcheri and identification of clones containing Amphi-pax genes

Amphioxus is a crucial organism for the study of vertebrate evolution. Although a genomic BAC library of Branchiostoma floridae has been constructed, we report here another BAC library construction of its distant relative species Branchiostoma belcheri. The amphioxus BAC library established in present study consists of 45,312 clones arrayed in one hundred and eighteen 384-well plates. The average insert fragment size was 120 kb estimated by Pulsed Field Gel Electrophoresis (PFGE) analysis of 318 randomly selected clones. The representation of the library is about 12 equivalent to the genome, allowing a 99.9995% probability of recovering any specific sequence of interest. We further screened the library with 4 single copied Amphi-Pax genes and identified total of 26 positive clones with average of 6.5 clones for each gene. The result indicates this library is well suited for many applications and should also serve as a useful complemental resource for the scientific community.

Amphi-Eomes/Tbr1: An amphioxus cognate of vertebrate Eomesodermin and T-Brain1 genes whose expression reveals evolutionarily distinct domain in amphioxus development

A cDNA for a novel T-box containing gene was isolated from the amphioxus Branchiostoma belcheri. A molecular phylogenetic tree constructed from the deduced amino acid sequence of the isolated cDNA indicates that this gene belongs to the T-Brain subfamily. In situ hybridization reveals that the expression is first detected in the invaginating archenteron at the early gastrula stage and this expression is down-regulated at the neurula stage. In early larvae, the expression appears again and transcripts are detected exclusively in the pre-oral pit (wheel organ-Hatschek's pit of the adult). In contrast to the vertebrate counterparts, no transcripts are detected in the brain vesicle or nerve cord throughout the development. These results are interpreted to mean that a role of T-Brain products in vertebrate forebrain development was acquired after the amphioxus was split from the lineage leading to the vertebrates. On the other hand, comparison of the tissue-specific expression domain of T-Brain genes and other genes between amphioxus and vertebrates revealed that the pre-oral pit of amphioxus has several molecular features which are comparable to those of the vertebrate olfactory and hypophyseal placode. (C) 2002 Wiley-Liss, Inc.

Morphological and molecular evidence demonstrates the amphi-Atlantic distribution of Laurencia catarinensis (Ceramiales, Rhodophyta)

We performed morphological and molecular studies of Laurencia catarinensis from the Canary Islands. This species has an entangled habit, cushion-like tuft formation, cortical cell walls, slightly to markedly projecting near the apex, and lacking lenticular thickenings in medullary cells. We inferred its phylogenetic position by analyzing the chloroplast-encoded rbcL gene sequences from 41 samples. The results demonstrate that specimens of L. catarinensis from the Canary Islands, where it is referred to as L. intricata, and those from Brazil (including specimens from the type locality in Santa Catarina) form a monophyletic clade with low genetic divergence (0-0.9%). In contrast, specimens of L. intricata from the type locality in Cuba, Mexico, and the USA were clearly distinct from L. catarinensis collected in Brazil and the Canary Islands, as shown by high genetic divergence values (4.9-5.7%). The type material of L. catarinensis from Brazil allowed us to identify all samples from the Canarian Archipelago as L. catarinensis. These findings expand the known geographical distribution of L. catarinensis to the eastern Atlantic Ocean and demonstrate an amphi-Atlantic distribution of the species.

Expression of muscle-related genes and two MyoD genes during amphioxus notochord development

The notochord is one of the diagnostic features of the phylum Chordata. Despite the similarities in the early morphogenetic patterns of the notochords of various chordates, they are strikingly distinct from one another at the histological level. The amphioxus notochord is one example of an evolutionary novelty because it is made up of muscle cells. Our previous expressed sequence tag analysis, targeting messenger RNAs expressed in the adult amphioxus notochord, demonstrated that many muscle-related genes are expressed there. To characterize amphioxus notochord cells and to gain insights into the myogenic program in the notochord, we determined the spatial and temporal expression patterns of these muscle-related genes during amphioxus development. We found that BbNA1 (notochord actin), Amphi-Trop I (troponin I), Amphi-TPmyosin (tropomyosin), Amphi-MHC2 (myosin heavy chain), Amphi-nMRLC (notochord-specific myosin regulatory light chain), AmphinTitin/MLCK (notochord-specific titin/myosin light chain kinase), Amphi-MLP/CRP3 (muscle LIM protein), and Amphi-nCalponin (notochord-specific calponin) are expressed with characteristic patterns in notochord cells, including the central cells, dorsally located cells, and ventrally located cells, suggesting that each notochord cell has a unique molecular architecture that may reflect its function. In addition, we characterized two MyoD genes (Amphi-MyoD1 and Amphi-MyoD2) to gain insight into the genetic circuitry governing the formation of the notochord muscle. One of the MyoD genes (Amphi-MyoD2) is expressed in the central notochord cells, and the coexistence of Amphi-MyoD2 transcripts along with the Amphi-MLP/CRP3 transcripts implies the participation of Amphi-MyoD2 in the myogenic program in the notochord muscle.

利用叶绿体DNA trn L-F序列初步探讨菊科风毛菊属的系统发育

风毛菊属Saussurea DC．是菊科物种分化十分剧烈和分类处理十分困难的一个属。该属的单系起源性质、属下分类系统以及一些独特形态物种的系统位置尚不清楚，有待进一步验证。本文测定了代表该属5个亚属37种植物43个样品和川木香属Dolomiaea DC．的1种样品的叶绿体DNA trnL-F序列，并调取菜蓟族Cardueae Cass．与风毛菊属具有一定亲缘关系的13属的该序列，一起进行了分支分析，重点验证该属的属下形态分类系统以及形态特殊、青藏高原地区特有的雪兔子亚属subgen．Eriocoryne中假雪兔子组sect．Pseudoeriocoryne的单系性质。研究结果表明：(1)尽管风毛菊属5个亚属形态变异极大，但种间的trnL-F碱基变异却非常小；(2)根据形态学划分的5个亚属在分支图上没有得到分辨；(3)根据无明显茎、叶呈莲座状包被头状花序等特征建立的假雪兔子组是一多系群，与其他雪兔子亚属的种类也没有密切的亲缘关系，其共同拥有的形态学特征分别起源了4次；(4)雪莲亚属假雪莲组subgen．Amphi- laena sect．Pseudoamphilaena中的多鞘雪莲s．polycolea变种尖苞雪莲S．polycolea var．acuisauama与风毛菊亚属subgen．Saussurea的长毛风毛菊S．hieraciodies、美丽风毛菊s．superba、打箭风毛菊s．tatsienensis和重齿风毛菊s．katochaete具有一段长18个碱基的插入，但多鞘雪莲原变种和重齿风毛菊另一居群无此插入；这一插入在整个菜蓟族和风毛菊属中都十分特殊，是一次进化事件的结果，这一复合体的形态分化应该是在这一进化事件发生之后进行的；而尖苞雪莲和重齿风毛菊拥有这一特殊序列可能是由于杂交而导致种内存在不同的单倍性。研究结果证实青藏高原极端环境下即使在较低的分类等级——属内、种问的形态特征也存在相同选择压力下的生态趋同进化。这一点在利用形态特征研究该地区物种的亲缘关系和命名自然分类等级时应予以特别重视。风毛菊属提供了研究极端环境下物种快速分化、网状进化和趋同进化的典型范例。

Étude moléculaire des populations de Rhodiola rosea L. du nunavik (Québec, Canada)

Mémoire numérisé par la Division de la gestion de documents et des archives de l'Université de Montréal

Cytogenic Evidence for the Specific Distinction of an Alaskan Marmot, Marmota broweri Hall and Gilmore (Mammalia: Sciuridae)

Cytogenetic studies based upon somatic cells (bone marrow) have disclosed that the marmot hitherto designated Marmota caligata broweri Hall and Gilmore, occurring in the Brooks Range of Arctic Alaska, differs from M. c. caligata (Eschscholtz) in number of chromosomes (2n=36 as compared with 2n=42 in M. caligata) and in proportions of chromosomal types. Typical karyograms for the two species are presented. It is concluded that the Brooks Range marmot is specifically distinct from M. caligata, the applicable name being Marmota broweri Hall and Gilmore. Also determined were diploid chromosome numbers for two other Nearctic species of marmots, M. flaviventris (Audubon and Bachman), with 42, and M. olympus (Merriam), with 40. It is suggested that M. broweri survived the last (Wisconsin) glaciations in the amphi-Beringian refugium, and that its closest affinities may be with one of the Eurasian species of Marmota.

Darstellung und Diels-Alder-Reaktionen von Bis- und Tris-o-benzochinonen der 9,10-Dihydro-anthracenreihe

Abstract deutsch Die im Rahmen dieser Arbeit dargestellten Anthracen-amphi-chinone wurden durch Oxidation ihrer 9,10-Dihydro-2,3,6,7-tetrahydroxy-Derivate gewonnen, während zwei literaturbekannte Anthracen-amphi-chinone aus den entsprechenden 2,3,6,7-Tetrahydroxy-anthracenen dargestellt wurden. Bei gleicher Substitution wurden identische Produkte gefunden.Die entstandenen Produkte sollten in Diels-Alder-Reaktionen umgesetzt werden. Von allen Hydroxyverbindungen konnten bei der Oxidation mit 2,3-Dichlor-5,6-dicyano-p-benzochinon in Gegenwart von Cyclooctin die entsprechenden Cyclooctin-Addukte erhalten werden. Dadurch wurde nachgewiesen, daß die Oxidationen über die Bis-o-chinone verlaufen, obwohl es nicht gelang, Bis-ortho-benzochinone zu isolieren, die in 9- und 10-Stellung ein Protonen tragen. Stattdessen erhielt man durch eine Keto-Enol-Tautomerie die entsprechenden amphi-Chinone.Drei Bis-chinone wurden direkt mit Cyclooctin umgesetzt und lieferten bei gleicher Substitution die identischen Reaktionsprodukte. Die Cyclooctin-Addukte reagierten beim Bestrahlen durch CO-Eliminierung zu Kohlenwasserstoffen.Bei der Oxidation der Hydroxyverbindungen mit DDQ in Gegenwart von Pentamethyl-cyclopentadien erhielt man die entsprechenden PMCP-Addukte. Dabei reagieren die Chinone als Heterodien.Die Reaktivität von 1,5-Cyclooctadiin mit ortho-Benzochinonen wurde durch die Umsetzung mit 4,5-Dimethyl-ortho-benzochinon untersucht. Dabei wurde festgestellt, daß das Diin mit zwei Molekülen des Chinons reagiert.Mit den erhaltenen Ergebnissen wurde eine Diels-Alder-Polyaddition von 9,10-Dihydro-9,10-ethano-9,10-dimathyl-anthradichinon-(2,3;6,7) mit 1,5-Cyclooctadiin durchgeführt. Bei dieser Reaktion gelangte man zu Oligomeren.

Identification of mesenchymal stromal cells in human lung parenchyma capable of differentiating into aquaporin 5-expressing cells

The lack of effective therapies for end-stage lung disease validates the need for stem cell-based therapeutic approaches as alternative treatment options. In contrast with exogenous stem cell sources, the use of resident progenitor cells is advantageous considering the fact that the lung milieu is an ideal and familiar environment, thereby promoting the engraftment and differentiation of transplanted cells. Recent studies have shown the presence of multipotent 'mesenchymal stem cells' in the adult lung. The majority of these reports are, however, limited to animal models, and to date, there has been no report of a similar cell population in adult human lung parenchyma. Here, we show the identification of a population of primary human lung parenchyma (pHLP) mesenchymal stromal cells (MSCs) derived from intraoperative normal lung parenchyma biopsies. Surface and intracellular immunophenotyping by flow cytometry revealed that cultures do not contain alveolar type I epithelial cells or Clara cells, and are devoid of the following hematopoietic markers: CD34, CD45 and CXCR4. Cells show an expression pattern of surface antigens characteristic of MSCs, including CD73, CD166, CD105, CD90 and STRO-1. As per bone marrow MSCs, our pHLP cells have the ability to differentiate along the adipogenic, osteogenic and chondrogenic mesodermal lineages when cultured in the appropriate conditions. In addition, when placed in small airway growth media, pHLP cell cultures depict the expression of aquaporin 5 and Clara cell secretory protein, which is identified with that of alveolar type I epithelial cells and Clara cells, respectively, thereby exhibiting the capacity to potentially differentiate into airway epithelial cells. Further investigation of these resident cells may elucidate a therapeutic cell population capable of lung repair and/or regeneration.

Synchronous Holocene climatic oscillations recorded on the Swiss Plateau and at timberline in the Alps

Eight synchronous pre-Roman cold phases were found at 9600–9200, 8600–8150, 7550–6900, 6600– 6200, 5350–4900, 4600–4400, 3500–3200 and 2600–2350 radiocarbon years BP by reconstructing past climate at two sites on the Swiss Plateau and at timberline in the Alps. The cooling events during the early-and mid-Holocene represent temperature values similar to today, and apparently the onset of cooling events represents a deviation from today's mean annual temperature of about 1°C and is triggered at a 1000-year periodicity. At Wallisellen-Langachermoos (440 m), a former oligotrophic lake near Zürich, the correlation between sum mertime lake levels and the seed production of the amphi-Atlantic aquatic plantNajas flexilis was used to reconstruct lake levels over a 3000-year period during the first part of the Holocene. At Lake Seedorf on the western Swiss Plateau (609 m) the sedimentological, palynological and macrofossil record revealed fluctuations of lake levels for the complete Holocene. From Lago Basso in the southern Alps (2250 m, Val San Giacomo near Splügen Pass, Northern Italy) the terrestrial plant macrofossils – especiallyPinus cembra andLarix – allowed the reconstruction of timberline fluctuations controlled by climate. A similar climatic pattern was found at Gouillé Rion pond in the central Swiss Alps (2343 m, Val d'Hérémence) with plant macrofossils and pollen concentrations and percentages. We postulate that these climatic events are detectable throughout central Europe by independent methods in combination with precise AMS-radiocarbon datings on terrestrial plant remains. Our data fit other proxy records of regional climatic change, such as cool intervals from Greenland ice cores, glacier movements in the Swiss and Austrian Alps, and dendro-densitometry on subfossil wood, as well as the palaeoclimatic data from the Jura Mountains of France obtained by sedimentological analyses. Thus our data indicate that the Northern Hemisphere climate was less stable during the Holocene than previously believed.

Inhibition of G-protein betagamma-subunit functions by phosducin-like protein.

Phosducin is a cytosolic protein predominantly expressed in the retina and the pineal gland that can interact with the betagamma subunits of guanine nucleotide binding proteins (G proteins) and thereby may regulate transmembrane signaling. A cDNA encoding a phosducin-like protein (PhLP) has recently been isolated from rat brain [Miles, M. F., Barhite, S., Sganga, M. & Elliott, M. (1993) Proc. Natl. Acad. Sci. USA 90, 10831-10835. Here we report the expression of PhLP in Escherichia coli and its purification. Recombinant purified PUP inhibited multiple effects of G-protein betagamma subunits. First, it inhibited the betagamma-subunit-dependent ADP-ribosylation of purified alpha(o) by pertussis toxin. Second, it inhibited the GTPase activity of purified G(o). The IC50 value of PhLP in the latter assay was 89 nM, whereas phosducin caused half-maximal inhibition at 17 nM. And finally, PhLP antagonized the enhancement of rhodopsin phosphorylation by purified betagamma subunits. The N terminus of PhLP shows no similarity to the much longer N terminus of phosducin, the region shown to be critical for phosducin-betagamma-subunit interactions. Therefore, PhLP appears to bind to G-protein betagamma subunits by an as yet unknown mode of interaction and may represent an endogenous regulator of G-protein function.

Contrasting global genetic patterns in two biologically similar, widespread and invasive Ciona species (Tunicata, Ascidiacea)

Human-mediated dispersal interplays with natural processes and complicates understanding of the biogeographical history of species. This is exemplified by two invasive tunicates, Ciona robusta (formerly Ciona intestinalis type A) and C. intestinalis (formerly Ciona intestinalis type B), globally distributed and sympatric in Europe. By gathering new mitochondrial sequences that were merged with published datasets, we analysed genetic patterns in different regions, with a focus on 1) their sympatric range and 2) allopatric populations in N and S America and southern Europe. In the sympatric range, the two species display contrasting genetic diversity patterns, with low polymorphism in C. robusta supporting the prevalent view of its recent introduction. In the E Pacific, several genetic traits support the non-native status of C. robusta. However, in the NE Pacific, this appraisal requires a complex scenario of introduction and should be further examined supported by extensive sampling efforts in the NW Pacific (putative native range). For C. intestinalis, Bayesian analysis suggested a natural amphi-North Atlantic distribution, casting doubt on its non-native status in the NW Atlantic. This study shows that both natural and human-mediated dispersal have influenced genetic patterns at broad scales; this interaction lessens our ability to confidently ascertain native vs. non-native status of populations, particularly of those species that are globally distributed.

Contrasting global genetic patterns in two biologically similar, widespread and invasive Ciona species (Tunicata, Ascidiacea)

Human-mediated dispersal interplays with natural processes and complicates understanding of the biogeographical history of species. This is exemplified by two invasive tunicates, Ciona robusta (formerly Ciona intestinalis type A) and C. intestinalis (formerly Ciona intestinalis type B), globally distributed and sympatric in Europe. By gathering new mitochondrial sequences that were merged with published datasets, we analysed genetic patterns in different regions, with a focus on 1) their sympatric range and 2) allopatric populations in N and S America and southern Europe. In the sympatric range, the two species display contrasting genetic diversity patterns, with low polymorphism in C. robusta supporting the prevalent view of its recent introduction. In the E Pacific, several genetic traits support the non-native status of C. robusta. However, in the NE Pacific, this appraisal requires a complex scenario of introduction and should be further examined supported by extensive sampling efforts in the NW Pacific (putative native range). For C. intestinalis, Bayesian analysis suggested a natural amphi-North Atlantic distribution, casting doubt on its non-native status in the NW Atlantic. This study shows that both natural and human-mediated dispersal have influenced genetic patterns at broad scales; this interaction lessens our ability to confidently ascertain native vs. non-native status of populations, particularly of those species that are globally distributed.

Ichthyofauna assemblages from two unexplored Atlantic seamounts: Northwest Bank and João Valente Bank (Cape Verde archipelago)

Underwater censuses by divers were used to study the fish assemblages from two unexplored Atlantic seamounts in the Cape Verde archipelago. Fifty three species of 27 families were recorded: 27 in Northwest Bank and 46 in João Valente Bank. Northwest Bank had dense schools, while João Valente Bank had higher species richness and smaller schools. Both seamounts were dominated mainly by coastal species directly depending on seabed habitat (Demersal or benthopelagic). Of the 53 fish species recorded, 22.6% were of continental African origin, while 9.4% and 5.7% were endemic of the Cape Verde Islands and of the Macaronesia province, respectively. Most species (64.2%) had a very wide biogeographic distribution: cosmopolitan (22.6%), amphi-Atlantic (28.3%) and Atlantic-Mediterranean (13.2%). Northwest Bank and João Valente Bank may have a permanent fish community supported by various oceanographic-topographic interactions. João Valente Bank seems more diverse, which is probably associated with algae cover and with a larger area providing additional suitable and more varied habitats. The geographic proximity to the coast and the presence of oceanic and/or oceanodromous species suggests that the upper part of these seamounts may act both as attraction points and as “stepping-stones” for the dispersal of coastal species.