Natural history of the Adelie penguin.

Mode of access: Internet.

The influence of animal mobility on the assumption of uniform distances in aerial line-transect surveys

Line-transect distance sampling is a widely used method for estimating animal density from aerial surveys. Analysis of line-transect distance data usually relies on a requirement that the statistical distribution of distances of animal groups from the transect line is uniform. We show that this requirement is satisfied by the survey design if all other assumptions of distance sampling hold, but it can be violated by consistent survey problems such as responsive movement of the animals towards or away from the observer. We hypothesise that problems with the uniform requirement are unlikely to be encountered for immobile taxa, but might become substantial for species of high mobility. We test evidence for non-uniformity using double-observer distance data from two aerial surveys of five species with a spectrum of mobility capabilities and tendencies. No clear evidence against uniformity was found for crabeater seals or emperor penguins on the pack-ice in East Antarctica, while minor non-uniformity consistent with responsive movement up to 30 m was found for Adelie penguins. Strong evidence of either non-uniformity or a failure of the capture-recapture validating method was found for eastern grey kangaroos and red kangaroos in Queensland.

As aves antárticas estão livres de hemoparasitos? Um estudo de caso de pinguins (Pygoscelis spp.) e de skuas (Catharacta spp.) antárticos da Baía do Almirantado, Ilha Rei George, Antártica.

O parasitismo é uma importante força seletiva em populações, assim como a competição e a predação. Os parasitos sanguíneos podem afetar a coloração da plumagem, a seleção sexual e o sucesso reprodutivo em aves. As aves da região Antártica têm sido mencionadas na literatura como livres de hemoparasitos. A Baía do Almirantado, na Ilha Rei George, Península Antártica, é a maior Baía da região, abrigando diferentes espécies de aves durante o período reprodutivo. Dentre elas, estão duas espécies de skuas, as mais frequentes da Antártica, skua-sub-antártica (Catharacta lonnbergi) e skua-polar-do-sul (C. maccormicki) e três espécies de pinguins, pinguim-antártico (Pygoscelis antarctica), pinguim-papua (P. papua) e pinguim-de-adélia (P. adeliae). Skuas e pinguins são aves que se dispersam durante o inverno austral, podendo ser potenciais reservatórios e transmissores de parasitos, embora resultados negativos de hemoparasitos tenham sido encontrados para diversas outras aves marinhas e também para a região Antártica. O objetivo do presente trabalho foi investigar a presença de hemoparasitos em pinguins e skuas antárticos na Baía do Almirantado. Amostras de lâminas de esfregaço sanguíneo e de sangue para análises moleculares de pesquisa de Plasmodium/Haemoproteus foram coletadas em dois períodos reprodutivos, de dezembro de 2010 a março de 2011 e de dezembro de 2011 a fevereiro de 2012. Um total de 185 amostras de aves foram coletadas, incluindo 120 pinguins e 65 skuas. Skuas foram tiveram resultados negativos para hemoparasitos. As três espécies de pinguins foram positivas para Plasmodium/Haemoproteus , via técnica molecular, incluindo dois P. papua,dois P. antarctica etrês P. adeliae. Apenas um indivíduo confirmado positivo pela técnica molecular, pertencente a P. papua, foi positivo utilizando a técnica de esfregaço sanguíneo, com diagnóstico de Plasmodium sp. Não houve diferença significativa entre indivíduos machos e fêmeas das espécies parasitadas, assim como entre adultos e filhotes. As aves parasitadas (n=7), foram categorizadas abaixo do peso (n=5) e acima do peso (n=2). O presente estudo é o primeiro a relatar hemoparasitos na região Antártica e também é o primeiro registro de presença de hemoprotozoários para as três espécies de pinguins analisadas. A ausência de hemoparasitos em aves antárticas tem sido justificada pela ausência de potenciais vetores na região. Portanto, é possível que os pinguins parasitados tenham adquirido a infecção durante a dispersão por ocasião do inverno austral. No entanto, skuas antárticas também são aves migratórias, que podem atingir regiões com potenciais vetores reconhecidos, mas nunca foram diagnosticadas com hemoparasitos, o que foi reforçado pelos resultados negativos do presente estudo. Nesse caso, acredita-se que skuas, podem ter um sistema imune competente ou que a ausência de hemoparasitos nessas aves seja justificada por confinamentos filogenéticos entre parasito-hospedeiro. Entretanto, pouco se sabe sobre a existência de vetores na Antártica, rotas migratórias das aves da região e especificidade parasito-hospedeiro. Os resultados inéditos encontrados no presente estudo devem, portanto, servir como ponto de partida para o entendimento das interações parasito-hospedeiro, de forma a contribuir para a preservação do ambiente antártico.

Comparative genomic data of the Avian Phylogenomics Project.

BACKGROUND: The evolutionary relationships of modern birds are among the most challenging to understand in systematic biology and have been debated for centuries. To address this challenge, we assembled or collected the genomes of 48 avian species spanning most orders of birds, including all Neognathae and two of the five Palaeognathae orders, and used the genomes to construct a genome-scale avian phylogenetic tree and perform comparative genomics analyses (Jarvis et al. in press; Zhang et al. in press). Here we release assemblies and datasets associated with the comparative genome analyses, which include 38 newly sequenced avian genomes plus previously released or simultaneously released genomes of Chicken, Zebra finch, Turkey, Pigeon, Peregrine falcon, Duck, Budgerigar, Adelie penguin, Emperor penguin and the Medium Ground Finch. We hope that this resource will serve future efforts in phylogenomics and comparative genomics. FINDINGS: The 38 bird genomes were sequenced using the Illumina HiSeq 2000 platform and assembled using a whole genome shotgun strategy. The 48 genomes were categorized into two groups according to the N50 scaffold size of the assemblies: a high depth group comprising 23 species sequenced at high coverage (>50X) with multiple insert size libraries resulting in N50 scaffold sizes greater than 1 Mb (except the White-throated Tinamou and Bald Eagle); and a low depth group comprising 25 species sequenced at a low coverage (~30X) with two insert size libraries resulting in an average N50 scaffold size of about 50 kb. Repetitive elements comprised 4%-22% of the bird genomes. The assembled scaffolds allowed the homology-based annotation of 13,000 ~ 17000 protein coding genes in each avian genome relative to chicken, zebra finch and human, as well as comparative and sequence conservation analyses. CONCLUSIONS: Here we release full genome assemblies of 38 newly sequenced avian species, link genome assembly downloads for the 7 of the remaining 10 species, and provide a guideline of genomic data that has been generated and used in our Avian Phylogenomics Project. To the best of our knowledge, the Avian Phylogenomics Project is the biggest vertebrate comparative genomics project to date. The genomic data presented here is expected to accelerate further analyses in many fields, including phylogenetics, comparative genomics, evolution, neurobiology, development biology, and other related areas.

Carbon fluxes and pelagic ecosystem dynamics near two western Antarctic Peninsula Adélie penguin colonies: an inverse model approach

An inverse food-web model for the western Antarctic Peninsula (WAP) pelagic food web was constrained with data from Palmer Long Term Ecological Research (PAL-LTER) project annual austral summer sampling cruises. Model solutions were generated for 2 regions with Adelie penguin Pygoscelis adeliae colonies presenting different population trends (a northern and a southern colony) for a 12 yr period (1995-2006). Counter to the standard paradigm, comparisons of carbon flow through bacteria, microzooplankton, and krill showed that the diatom-krill-top predator food chain is not the dominant pathway for organic carbon exchanges. The food web is more complex, including significant contributions by microzooplankton and the microbial loop. Using both inverse model results and network indices, it appears that in the northern WAP the food web is dominated by the microbial food web, with a temporal trend toward its increasing importance. The dominant pathway for the southern WAP food web varies from year to year, with no detectable temporal trend toward dominance of microzooplankton versus krill. In addition, sensitivity analyses indicated that the northern colony of Adelie penguins, whose population size has been declining over the past 35 yr, appears to have sufficient krill during summer to sustain its basic metabolic needs and rear chicks, suggesting the importance of other processes in regulating the Adelie population decline.

(Table 1) Diving behaviour of male Adélie penguins (Pygoscelis adeliae) with and without corticosterone implants at Pointe Géologie

The amount of energy that organisms can allocate to self-maintenance and/or reproduction largely depends on their foraging strategies. Because of corticosterone (CORT) involvement in the control of energy metabolism, food intake and locomotor activity, recent studies have sought to demonstrate the role of this hormone in foraging decisions and performance. Moreover, considerable recent advances in animal-attached loggers now allow the study of behaviour in free-living animals. In order to assess the effects of CORT administration on the foraging behaviour of free-living Adelie Penguins Pygoscelis adeliae, we studied a group with CORT implants and a control group without CORT implants, by attaching time-depth recorders to the two groups and monitoring them throughout up to seven consecutive foraging trips during the guard stage (in Adelie Land, Antarctica). We found that foraging trips duration was similar between both groups. Dive durations, time spent at the bottom phase of dives, and the number of undulations per dive of CORT-implanted birds were all significantly higher than those of controls. However, CORT-implanted birds performed fewer dives overall (ca. 4,400) than controls (ca. 6,250) and spent many (13 and 6 times for penguins #3 and #4, respectively) long periods (>3 h) without diving. The low foraging effort and long resting periods support the view that CORT-implanted birds probably gained less energy than did the control birds. CORT treatment appears then to result in redirecting bird behaviour from costly activity (i.e. reproduction) to a behaviour promoting the preservation of energy reserves. Future studies are therefore needed to assess body condition and reproductive success of CORT-manipulated birds in parallel with the recording of their diving performances.

(Tables 1+4) Sample site substratum and morphometrics and damage levels of different populations of Laternula elliptica around Antarctica

We document differences in shell damage and shell thickness in a bivalve mollusc (Laternula elliptica) from seven sites around Antarctica with differing exposures to ice movement. These range from 60% of the sea bed impacted by ice per year (Hangar Cove, Antarctic Peninsula) to those protected by virtually permanent sea ice cover (McMurdo Sound). Patterns of shell damage consistent with blunt force trauma were observed in populations where ice scour frequently occurs; damage repair frequencies and the thickness of shells correlated positively with the frequency of iceberg scour at the different sites with the highest repair rates and thicker shells at Hangar Cove (74.2% of animals damaged) compared to the other less impacted sites (less than 10% at McMurdo Sound). Genetic analysis of population structure using Amplified Fragment Length Polymorphisms (AFLPs) revealed no genetic differences between the two sites showing the greatest difference in shell morphology and repair rates. Taken together, our results suggest that L. elliptica exhibits considerable phenotypic plasticity in response to geographic variation in physical disturbance.

(Table 1) Foraging trip characteristics of male Adélie penguins (Pygoscelis adeliae) during their first incubation trip at Pointe Géologie

Knowledge of habitat use by top marine predators in response to environmental conditions is crucial in the current context of global changes occurring in the Southern Ocean. We examined the at-sea locations of male Adelie penguins (Pygoscelis adeliae) breeding at Dumont d'Urville during their first, long incubation trip. Compared with the chick-rearing period, penguins performed longer trips, going to oceanic waters as far as 320 km from the colony. We observed 3 strategies: (1) five individuals covered large distances to the north, targeting open-ocean areas and following the currents of two persistent eddies; (2) five individuals foraged to the north-west, close to the Antarctic shelf slope at the limit of the pack ice; and (3) three individuals covered much shorter distances (northwards or eastwards). The foraging range also seemed to be limited by the body condition of the penguins before their departure to sea.

Tab.1: Tabulation of pinguin population within the Antarctic Peninsula region

Six species of penguins breed on the Antarctic continent, the Antarctic Peninsula, the South Shetland and South Orkney Islands. Their breeding populations within the Antarctic Peninsula, and the South Orkney and South Shetland Is., and estimates of global populations are given. Typical breeding seasons are also presented, but it must be noted that these will vary inter-annually and intra-annually under the influence of factors such as sea-ice extent and ENSO (interannual) and the location of each breeding colony (southerly localities will be later than northerly localities, as their breeding season is "compressed" within the shorter summer). Their foraging strategies (categorized as near-shore or offshore) and typical durations of foraging trips are also tabulated. As with breeding season events, foraging behaviour will vary intra-seasonally and inter-seasonally (in terms of dive duration, dive depth, foraging location, etc). The distribution of known penguin breeding colonies is circum-continental, with Emperor and Adelie penguins predominant on approximately 75 % of the coast, with two major concentrations in the Ross Sea and in Prydz Bay. The third concentration is in the Antarctic Peninsula region, where some of the largest penguin colonies are present. All six species breed within the area (predominantly Chinstrap Penguins), and the Peninsula region has a greater diversity than the remainder ofthe Antarctic with respect to penguins. The distribution at sea of nonbreeding penguins is less cIear. Non-breeding individuals of all six species move throughout the Southern Ocean, and in many cases, to areas well north of the winter pack-ice zone. However, it is not possible to estimate densities of penguins at sea as there are no estimates of non-breeding penguin populations the extent of their travels.

(Table 1) Breeding parameters for 60 male Adélie penguins (Pygoscelis adeliae) at station Dumont d'Urville (Antarctica) depending on treatment (control vs. CORT)

Corticosterone, the main stress hormone in birds, mediates resource allocation, allowing animals to adjust their physiology and behaviour to changes in the environment. Incubation is a time and energy-consuming phase of the avian reproductive cycle. It may be terminated prematurely, when the parents' energy stores are depleted or when environmental conditions are severe. In this study, the effects of experimentally elevated baseline corticosterone levels on the parental investment of incubating male Adelie penguins were investigated. Incubation duration and reproductive success of 60 penguins were recorded. The clutches of some birds were replaced by dummy eggs, which recorded egg temperatures and rotation rates, enabling a detailed investigation of incubation behaviour. Corticosterone levels of treated birds were 2.4-fold higher than those of controls 18 days post treatment. Exogenous corticosterone triggered nest desertion in 61% of the treated birds; consequently reducing reproductive success, indicating that corticosterone can reduce or disrupt parental investment. Regarding egg temperatures, hypothermic events became more frequent and more pronounced in treated birds, before these birds eventually abandoned their nest. The treatment also significantly decreased incubation temperatures by 1.3 °C and lengthened the incubation period by 2.1 days. However, the number of chicks at hatching was similar among successful nests, regardless of treatment. Weather conditions appeared to be particularly important in determining the extent to which corticosterone levels affected the behaviour of penguins, as treated penguins were more sensitive to severe weather conditions. This underlines the importance of considering the interactions of organisms with their environment in studies of animal behaviour and ecophysiology.

Classified Adélie penguin colonies from Landsat data

Breeding distribution of the Adelie penguin, Pygoscelis adeliae, was surveyed with Landsat-7 Enhanced Thematic Mapper Plus (ETM+) data along the coastline of Antarctica, an area covering approximately 330° of longitude. An algorithm was designed to minimize the radiometric contribution from exogenous sources and to retrieve Adelie penguin colony location and spatial extent from the ETM+ data. In all, 9143 individual pixels were classified as belonging to an Adelie penguin colony class out of the entire dataset of 195 ETM+ scenes, where the dimension of each pixel is 30 m by 30 m, and each scene is approximately 180 km by 180 km. Pixel clustering identified a total of 187 individual Adelie penguin colonies, ranging in size from a single pixel (900 m**2) to a maximum of 875 pixels (0.788 km**2). Colony retrievals have a very low error of commission, on the order of 1 percent or less, and the error of omission was estimated to be 2.9 percent by population based on comparisons with direct observations from surveys across east Antarctica. Thus, the Landsat retrievals can successfully locate Adelie penguin colonies that account for ~97 percent of a regional population. Geographic coordinates and the spatial extent of each colony retrieved from the Landsat data are available publically. Regional analysis found several areas where the Landsat retrievals suggest populations that are significantly larger than published estimates. Six Adelie penguin colonies were found that are believed to be unreported in the literature.