Complete Genome Sequence of Mycoplasma suis and Insights into Its Biology and Adaption to an Erythrocyte Niche

Mycoplasma suis, the causative agent of porcine infectious anemia, has never been cultured in vitro and mechanisms by which it causes disease are poorly understood. Thus, the objective herein was to use whole genome sequencing and analysis of M. suis to define pathogenicity mechanisms and biochemical pathways. M. suis was harvested from the blood of an experimentally infected pig. Following DNA extraction and construction of a paired end library, whole-genome sequencing was performed using GS-FLX (454) and Titanium chemistry. Reads on paired-end constructs were assembled using GS De Novo Assembler and gaps closed by primer walking; assembly was validated by PFGE. Glimmer and Manatee Annotation Engine were used to predict and annotate protein-coding sequences (CDS). The M. suis genome consists of a single, 742,431 bp chromosome with low G+C content of 31.1%. A total of 844 CDS, 3 single copies, unlinked rRNA genes and 32 tRNAs were identified. Gene homologies and GC skew graph show that M. suis has a typical Mollicutes oriC. The predicted metabolic pathway is concise, showing evidence of adaptation to blood environment. M. suis is a glycolytic species, obtaining energy through sugars fermentation and ATP-synthase. The pentose-phosphate pathway, metabolism of cofactors and vitamins, pyruvate dehydrogenase and NAD(+) kinase are missing. Thus, ribose, NADH, NADPH and coenzyme A are possibly essential for its growth. M. suis can generate purines from hypoxanthine, which is secreted by RBCs, and cytidine nucleotides from uracil. Toxins orthologs were not identified. We suggest that M. suis may cause disease by scavenging and competing for host nutrients, leading to decreased life-span of RBCs. In summary, genome analysis shows that M. suis is dependent on host cell metabolism and this characteristic is likely to be linked to its pathogenicity. The prediction of essential nutrients will aid the development of in vitro cultivation systems.

Adaption of the Creative Commons approach and the roaming concept to spatial data infrastructures (SDI)

Dissertation submitted in partial fulfilment of the requirements for the Degree of Master of Science in Geospatial Technologies

Adaption multivariater Testmethoden für hochdimensionale Daten der funktionellen Bildgebung

Magdeburg, Univ., Fak. für Mathematik, Diss., 2012

Adaption of Courses and Learning Environment to the User Context in dotLRN

The explosive growth of Internet during the last years has been reflected in the ever-increasing amount of the diversity and heterogeneity of user preferences, types and features of devices and access networks. Usually the heterogeneity in the context of the users which request Web contents is not taken into account by the servers that deliver them implying that these contents will not always suit their needs. In the particular case of e-learning platforms this issue is especially critical due to the fact that it puts at stake the knowledge acquired by their users. In the following paper we present a system that aims to provide the dotLRN e-learning platform with the capability to adapt to its users context. By integrating dotLRN with a multi-agent hypermedia system, online courses being undertaken by students as well as their learning environment are adapted in real time

Project Master Document adaption in order fulfillment process

This thesis discusses adaption of new project management tool at ABB Oy Motors and Generators business unit, Synchronous Machines profit centre. Thesis studies project modeling in general and buries in the Gate Model used at ABB Synchronous Machines. It is essential to understand Gate Model because this new project management tool, called Project Master Document, is created on the base of the existing project model. Thesis also analyzes goals and structure of Project Master Document in order to ease implementation of this new tool. Project Master Document aims to improved customer order fulfillment by clearing order handover interface. Office process, especially responsibilities and target dates, become also clearer after Master Document implementation. The document is built to be frame for whole order fulfillment process including check points for each gate of project model and updated memos from all project meetings. Furthermore, project progress will be clearly stated by status markings and visualized with colors.

Klassifikationsgestützte on-line Adaption eines robusten beobachterbasierten Fehlerdiagnoseansatzes für nichtlineare Systeme

Diese Arbeit behandelt die Problemstellung der modellbasierten Fehlerdiagnose für Lipschitz-stetige nichtlineare Systeme mit Unsicherheiten. Es wird eine neue adaptive Fehlerdiagnosemethode vorgestellt. Erkenntnisse und Verfahren aus dem Bereich der Takagi-Sugeno (TS) Fuzzy-Modellbildung und des Beobachterentwurfs sowie der Sliding-Mode (SM) Theorie werden genutzt, um einen neuartigen robusten und nichtlinearen TS-SM-Beobachter zu entwickeln. Durch diese Zusammenführung lassen sich die jeweiligen Vorteile beider Ansätze miteinander kombinieren. Bedingungen zur Konvergenz des Beobachters werden als lineare Matrizenungleichungen (LMIs) abgeleitet. Diese Bedingungen garantieren zum einen die Stabilität und liefern zum anderen ein direktes Entwurfsverfahren für den Beobachter. Der Beobachterentwurf wird für die Fälle messbarer und nicht messbarer Prämissenvariablen angegeben. Durch die TS-Erweiterung des in dieser Arbeit verwendeten SM-Beobachters ist es möglich, den diskontinuierlichen Rückführterm mithilfe einer geeigneten kontinuierlichen Funktion zu approximieren und dieses Signal daraufhin zur Fehlerdiagnose auszuwerten. Dies liefert eine Methodik zur Aktor- und Sensorfehlerdiagnose nichtlinearer unsicherer Systeme. Gegenüber anderen Ansätzen erlaubt das Vorgehen eine quantitative Bestimmung und teilweise sogar exakte Rekonstruktion des Fehlersignalverlaufs. Darüber hinaus ermöglicht der Ansatz die Berechnung konstanter Fehlerschwellen direkt aus dem physikalischen Vorwissen über das betrachtete System. Durch eine Erweiterung um eine Betriebsphasenerkennung wird es möglich, die Schwellenwerte des Fehlerdiagnoseansatzes online an die aktuelle Betriebsphase anzupassen. Hierdurch ergibt sich in Betriebsphasen mit geringen Modellunsicherheiten eine deutlich erhöhte Fehlersensitivität. Zudem werden in Betriebsphasen mit großen Modellunsicherheiten Falschalarme vermieden. Die Kernidee besteht darin, die aktuelle Betriebsphase mittels eines Bayes-Klassikators in Echtzeit zu ermitteln und darüber die Fehlerschwellen an die a-priori de nierten Unsicherheiten der unterschiedlichen Betriebsphasen anzupassen. Die E ffektivität und Übertragbarkeit der vorgeschlagenen Ansätze werden einerseits am akademischen Beispiel des Pendelwagens und anderseits am Beispiel der Sensorfehlerdiagnose hydrostatisch angetriebener Radlader als praxisnahe Anwendung demonstriert.

Effect of environmental conditions on the N uptake route of soil microorganisms and adaption of a method to determine amino acid oxidase in soil

Soil microorganisms have evolved two possible mechanisms for their uptake of organic N: the direct route and the mobilization-immobilization-turnover (MIT) route. In the direct route, simple organic molecules are taken up via various mechanisms directly into the cell. In the MIT route, the deamination occurs outside the cell and all N is mineralized to NH4+ before assimilation. A better understanding of the mechanisms controlling the different uptake routes of soil microorganisms under different environmental conditions is crucial for understanding mineralization processes of organic material in soil. For the first experiment we incubated soil samples from the long term trial in Bad Lauchstädt with corn residues with different C to N ratios and inorganic N for 21 days at 20 °C. Under the assumption that all added amino acids were taken up or mineralized, the direct uptake route was more important in soil amended with corn residues with a wide C to N ratio. After 21 days of incubation the direct uptake of added amino acids increased in the order addition of corn residue with a: “C to N ratio of 40 & (NH4)2SO4 and no addition (control)” (69% and 68%, respectively) < “C to N ratio of 20” (73%) < “C to N ratio of 40” (95%). In all treatments the proportion of the added amino acids that were mineralized increased with time, indicating that the MIT route became more important over time. To investigate the effects of soil depth on the N uptake route of soil microorganisms (experiment II), soil samples in two soil depths (0-5 cm; 30-40 cm) were incubated with corn residues with different C to N ratios and inorganic N for 21 days at 20 °C and 60% (WHC). The addition of corn residue resulted in a marked increase of protease activity in both depths due to the induction from the added substrate. Addition of corn residue with a wide C to N ratio resulted in a significantly greater part of the direct uptake (97% and 94%) than without the addition of residues (85% and 80%) or addition of residue with a small C to N ratio (90% and 84%) or inorganic N (91% and 79% in the surface soil and subsoil, respectively), suggesting that under conditions of sufficient mineralizable N (C to N ratio of 20) or increased concentrations of NH4+, the enzyme system involved in the direct uptake is slightly repressed. Substrate additions resulted in an initially significantly higher increase of the direct uptake in the surface soil than in the subsoil. As a large proportion of the organic N input into soil is in form of proteinaceous material, the deamination of amino acids is a key reaction of the MIT route. Therefore the enzyme amino acid oxidase contribute to the extracellular N mineralization in soil. The objective of experiment III was to adapt a method to determine amino acid oxidase in soil. The detection via synthetic fluorescent Lucifer Yellow derivatives of the amino acid lysine is possible in soil. However, it was not possible to find the substrate concentration at which the reaction rate is independent of substrate concentration and therefore we were not able to develop a valid soil enzyme assay.

Adaption of Courses and Learning Environment to the User Context in dotLRN

The explosive growth of Internet during the last years has been reflected in the ever-increasing amount of the diversity and heterogeneity of user preferences, types and features of devices and access networks. Usually the heterogeneity in the context of the users which request Web contents is not taken into account by the servers that deliver them implying that these contents will not always suit their needs. In the particular case of e-learning platforms this issue is especially critical due to the fact that it puts at stake the knowledge acquired by their users. In the following paper we present a system that aims to provide the dotLRN e-learning platform with the capability to adapt to its users context. By integrating dotLRN with a multi-agent hypermedia system, online courses being undertaken by students as well as their learning environment are adapted in real time

An Investigation Into the Adaption of the Induction Furnace for Determining the Equilibrim Diagram of the System Cu2S-FeS

This investigation was started in an effort to find an accurate and efficient method of determining the freezing points of ferrous and cuprous sulphides, mixtures of the two substances, and from this to establish the liquidus line of the equilibrium dia­gram.