Genome Sequence of Exiguobacterium antarcticum B7, Isolated from a Biofilm in Ginger Lake, King George Island, Antarctica

Exiguobacterium antarcticum is a psychotropic bacterium isolated for the first time from microbial mats of Lake Fryxell in Antarctica. Many organisms of the genus Exiguobacterium are extremophiles and have properties of biotechnological interest, e. g., the capacity to adapt to cold, which make this genus a target for discovering new enzymes, such as lipases and proteases, in addition to improving our understanding of the mechanisms of adaptation and survival at low temperatures. This study presents the genome of E. antarcticum B7, isolated from a biofilm sample of Ginger Lake on King George Island, Antarctic peninsula.

Neogene Radiolarians from the Kerguelen Plateau

Abundant, generally well-preserved radiolarians from Sites 737, 744, 745, 746, 747, 748, and 751 were used in stratigraphic analysis of Neogene, and particularly middle Miocene to Holocene, Kerguelen Plateau sediments. The composite Kerguelen section is more complete than the Weddell Sea sections recovered by Leg 113, and the radiolarians are better preserved. Leg 113 radiolarian zonations of Weddell Sea sites were applicable with only slight modification, and three new zones - Siphonosphaera vesuvius, Acrosphaeral labrata, and Amphymenium challengerae - are proposed for the latest Miocene. Geologic age estimates are given for all radiolarian zones used. Major hiatuses affecting most sites were seen within the middle Miocene, in the latest Miocene, and latest Pliocene. Five new species are described: Acrosphaera? labrata, Acrosphaera? mercurius, Siphonosphaera vesuvius, Actinomma? magnifenestra, and Helotholus? haysi.

Investigation of Quaternary foraminifera in sediment core CRP-1 from the Ross Sea, Antarctica

Foraminifera are examined in twenty-six samples from a 44 metre succession of Quaternary glacial sediments recovered from the CRP-1 drillhole on Roberts Ridge, southwestern Ross Sea, Antarctica. In situ marine assemblages were documented in at least three of the six lithostratigraphic units, and it is likely that the remaining three interbedded diamicton units are also marine in origin. Peak foraminiferal diversities are documented in Unit 3.1 (73 species) and Unit 2.2 (32 species). Calcareous benthics dominate the assemblages, but may be accompanied by abundant occurrences of the planktonic Neogloboquadrina pachyderma. Low diversity agglutinated faunas appear in the uppermost strata of Units 4.1 and 2.2. A close relationship between lithofacics and foraminiferal biofacies points to marine environments that alternated between proximity to and distance from active glaciers and iceshelf fronts, with associated variations in salinity, sea-surface ice cover and the levels of rainout from debris-laden ice.

Eocene and Oligocene radiolarian biostratigraphy from the Southern Ocean

Eocene-Oligocene radiolarians from Ocean Drilling Program Sites 699, 702, and 703, Leg 114 of the Subantarctic Atlantic were examined in order to extend the tripartite zonation for the recovered cores based on results of similar analysis of Leg 120 submarine sediments from the Indian Ocean. Correlation of the two oceans is made by examining 23 biohorizons and the three zones, Eucyrtidium spinosum, Axoprunum irregularis, and Lychnocanoma conica, in ascending stratigraphic order. One new species, Eucyrtidium nishimurae, is described.

Radiolarian Paleogene biostratigraphy in the southern Indian Ocean, ODP Leg 120

During Ocean Drilling Program Leg 120, an almost complete Paleogene sediment section on the Kerguelen Plateau in the southern Indian Ocean was recovered. The biostratigraphy of radiolarians from these sediments at Sites 748 and 749 is studied. A biostratigraphic framework established in low and middle latitudes is not applicable because of the absence of most zonal marker species. Biogenic opal is present only in middle Eocene to Oligocene sediments, and three new zones-Lychnocanoma conica, Axoprunum (?) irregularis, and Eucyrtidium spinosum zones-are proposed. The Paleogene antarctic radiolarian fauna is different from that in low and middle latitudes. Three new species, Axoprunum (?) irregularis, Eucyrtidium cheni, and Eucyrtidium spinosum, are described.

Radiolarian fauna of sediment core MD96-2089 off Lüderitz, Namibia

The study of radiolarian assemblages from Core MD 962086 provides new information on the variability in the upwelling intensity and origin of upwelled water masses over the past 350 ky in one of the major filamentous regions of the Benguela Upwelling System (BUS), located off Lüderitz, Namibia. The use of key radiolarian species to trace the source of upwelled waters, and the use of a radiolarian-based upwelling index (URI) to reconstruct the upwelling intensity represent the first use of radiolarians for paleoceanographic reconstructions in the BUS. These radiolarian-based proxies indicate strongest upwelling during Marine Isotope Stages (MIS) 3, 5, and 8, which compares well with other studies. While during MIS 3 and 8, the radiolarian-based proxies indicate the influx of waters of Southern Ocean origin, they also point to the increased influence of tropical waters during the lower portion of MIS 5. During MIS 2, 4 and 6 the radiolarian assemblages indicate generally lower upwelling intensities, although this signal is complicated by the increased occurrence of organic carbon in the sediments during these intervals. During MIS 2 there appears to be less of an input of Southern Ocean waters to the BUS, although during the also glacial MIS 4 and 6, there is evidence for an increased influence of cold Antarctic waters. The comparison of the results from Core MD 962086 with other studies in the BUS area indicates a non-uniform pattern of upwelling intensity and advection of cold, southern waters into this system during MIS 2. Weaker upwelling signaled by the radiolarian-based proxy in MIS 4 is in contrast to other studies that indicate higher productivity during this time period. In general, the data show that there is a strong spatiotemporal complexity in upwelling intensity in the BUS and that the advection of water into it is not strongly tied to glacial-interglacial variations in climate.

Table 2: Evaporation from individual shoots of antarctic mosses

Experimental observations on pathways of water movement are discussed in relation to anatomical and micromorphological features of five moss species from Signy Island, South Orkney Islands. Significant internal uptake of water was recorded only in the mesic species Polytrichum alpinum (internal=>60% of total) and Bartramia patens (internal=c.30% of total), in experiments in which uptake by cut shoots was compared in individuals with the external pathway blocked, and others with both external and internal pathways open. Internal uptake maintained shoot water content close to full turgor in P. alpinun and at 30% of full tugor in B. patens, whereas water content fell to 12-15% dry wt. in the lithophytes Andreaea gainii and Schistidium antarctici and in the mesic/hydric species Drepanocladus uncinatus, with the external pathway blocked. Where both pathways were open water uptake from below maintained water content at or above full turgor in shoots of all five species. External water uptake by capillarity occurred most rapidly in the lithophytes, and was slower in initially air-dry than in hydrated shoots of the other species. The spreading limbs of leaves in B. patens and P. alpinum are water-repellent, as are the bright green leaves in the apical 1-2 mm of dry shoots of the lithophytes. A central strand of hydroids is well-developed only in B. patens and P. alpinum. These two species have deposits of surface wax on parts of the leaves, and surface wax also occurs on the green apical leaves in some specimens of S. antarcticum and other lithophytes from Signy Island.

Dinoflagellate abundance and events of ODP Site 189-1172 sediments

Palynomorphs were studied in samples from Ocean Drilling Program (ODP) Leg 189, Holes 1172A and 1172D (East Tasman Plateau; 2620 m water depth). Besides organic walled dinoflagellate cysts (dinocysts), broad categories of other palynomorphs were quantified in terms of relative abundance. In this contribution, we provide an overview of the dinocyst distribution from the Maastrichtian to lowermost Oligocene and Quaternary intervals and illustrate main trends in palynomorph distribution. The uppermost Cretaceous-lowermost Oligocene succession of Site 1172 has a confident biomagnetostratigraphy, enabling us to tie early Paleogene Southern Hemisphere dinocyst events to the geomagnetic polarity timescale for the first time. Dinocyst species from the Maastrichtian to earliest Oligocene at Site 1172 are largely endemic ("Transantarctic Flora") or bipolar; cosmopolitan taxa are present in the background as well. The Maastrichtian-early late Eocene dinocyst assemblages are indicative of shallow-marine to restricted marine, pro-deltaic conditions, closely tied to a massive siliciclastic sequence. By middle late Eocene times (~35.5 Ma), the siliciclastic sequence gave way to a thin glauconitic unit, considered to reflect the deepening of the Tasmanian Gateway. This transition coincides with the most prominent change in dinocyst associations of the Paleogene. The turnover is inferred to reflect a change from marginal marine to more offshore conditions, with increased winnowing and oxidation. Overlying pelagic carbonate ooze of middle early Oligocene and younger age is virtually barren of organic microfossils, although Quaternary assemblages have been recovered. This aspect is taken to reflect average low sedimentation rates and well-oxygenated water masses during most of the Oligocene and Neogene. The few palynologically productive samples from the Oligocene-Quaternary interval have a stronger cosmopolitan to subtropical signature, with warm-water species being common to abundant.

Radiolarian assemblages of the late Neogene North Pacific

Radiolarian census and abundance data were collected from three deep-sea cores drilled by the Ocean Drilling Program Sites 884, 887 and 1151 to investigate patterns of ecologic changes in space and time during the last 16 million years for the mid-latitude to subarctic North Pacific. High concentrations of radiolarians occurred between 9.0 and 2.7 Ma. Radiolarian species richness was highest in the early middle Miocene at each site and gradually decreased up to about 7 Ma, coinciding with a well-established global cooling trend. A degree of overlap index calculated for radiolarian assemblages revealed 11 faunal change events, of which 8 corresponded to global cooling events and expansions of polar ice sheets. Three of the faunal change events were observed within the peak of radiolarian accumulation rate and were ascribed to changes in primary productivity in the North Pacific rather than global climatic changes. Our assemblage analyses revealed that north-south differentiation in radiolarian assemblages in the northwestern Pacific has existed since 16 Ma and became more distinct via major steps at 6.8 Ma and 2.7 Ma, coinciding with major glaciation events, and that east-west faunal contrasts in the subarctic region became obvious beginning at 11.7 Ma and changed to a different mode around 6.8 Ma. The observed east-west faunal differences possibly reflect east to west climate differences that were characterized by cooler temperatures in the east than the west during the late Miocene (11.7-6.8 Ma) and then by the opposite temperature trend (6.8 Ma-Recent). A severe glaciation at 2.7 Ma played a large role, particularly in temporal changes in radiolarian accumulation rate and assemblage composition.

Dive depth profile and immobilisation data of adult male and female Weddell seals at Drescher Inlet from expedition DRE1998

Adult male and female Weddell seals (Leptonychotes weddellii) were fitted with Time-depth recorders (TDR) at Drescher Inlet (Riiser Larsen Ice Shelf), eastern Weddell Sea coast, in February 1998. Eight of 15 data sets were selected for analyses to investigate the seals' foraging behaviour (doi:10.1594/PANGAEA.511465, doi:10.1594/PANGAEA.511454, doi:10.1594/PANGAEA.511456, doi:10.1594/PANGAEA.511457, doi:10.1594/PANGAEA.511459, doi:10.1594/PANGAEA.511462, doi:10.1594/PANGAEA.511466, doi:10.1594/PANGAEA.511467). These data sets provided simultaneous dive records of eight seals over eight days. The seals primarily foraged within two depth layers, these being from the sea surface to 160 m where temperature and salinity varied considerably, and from 340 to 450 m near the bottom where temperature was lowest and salinity highest, with little variation. While pelagic and benthic diving occurred during daylight, the seals foraged almost exclusively in the upper water column at night. Trawling during daytime confirmed that Pleuragramma antarcticum were by far the most abundant fish both in the pelagial and close to the bottom. Pelagic night-hauls at 110-170 m depth showed highly variable biomass of P. antarcticum with a peak at around midnight. The temporal changes in the local abundance of P. antarcticum, particularly in the pelagial, may explain the trends in the seals' pelagic and benthic foraging activities. This is the first study which describes the jaw movements of a hunting seal which are presumably indicative of feeding events. Trophic links from the Weddell seal to fish, zooplankton and krill, Euphausia superba, are discussed. Another seven data sets did not overlap substantially with the selected time frame (doi:10.1594/PANGAEA.511458, doi:10.1594/PANGAEA.511460, doi:10.1594/PANGAEA.511464, doi:10.1594/PANGAEA.511468, doi:10.1594/PANGAEA.511469, doi:10.1594/PANGAEA.511453, doi:10.1594/PANGAEA.511463). A total of 25 Weddell seals were immobilised during the study period using a combination of ketamine, xylazine, and diazepam. Seven seals were drugged once, 15 seals two times, and three were drugged three times, coming to a total of 46 immobilisation procedures. Narcoses were terminated with yohimbine (doi:10.1594/PANGAEA.438933).

Recent ostracods in surface sediment samples from Admiralty Bay, King George Island, West Antarctica

Ostracods from Admiralty Bay on King George Island (South Shetland Islands) represent 29 podocopid species, belonging to 19 genera, one cladocopid and six myodocopid species. They were recovered from Recent marine and/or glacio-marine sediment samples from water depths of up to 520 m. These ostracods constitute a variable assemblage, which is overall typical for the Antarctic environment. Shallow-water assemblages tend to be more variable in terms of frequencies and species richness than deep-water assemblages. The later are low in numbers and remain relatively high diversities. Overall, no linear relation between ostracod assemblage-composition and environmental features analyzed was recognized.

Tab. 1: Summary of available data about antifreeze peptides of polar fish

In the blood of Antarctic notothenioid and Arctic gadiform fishes, freezing is inhibited by antifreeze glycopeptide macromolecules (AFGP). These antifreeze molecules are built up of repeating tripeptide units (Ala-Ala-Thr)n, to which the disaccharide fl-D-galactosyl-(1->3)a-N-acetyl-D-galactosamine is linked through the hydroxyl oxygen of the threonyl residue. Species of Liparididae, Zoarcidae, Cottidae and Pleuronectidae synthezise only unglycosylated antifreeze peptides (AFP). It could be demonstrated for the Antarctic silverfish Pleuragramma antarcticum that the synthesis of AFGP is not constitutive but rather regulated by water temperature. Moreover a novel glycopeptid was isolated and characterised from P. antarcticum, the Pleuragramma-antifreeze glycopeptid (PAGP). The level of antifreeze concentration was dependent on the ambient water temperature, the depth of distribution, the life cycle and the evolution of the species. Surprisingly, detectable AFGPs in perciform fish of the Antarctic and gadiform fish of the Arctic and Antarctic could illustrate, that before the continental drift occurred a precursor glycopeptid existed, and that the existence of freezing resistance in some species reflects the past glaciation. The wide distribution and high heterogeneity of AFPs point to the assumption that these peptides are results of cold shock stress responses.

Tab. 1: Mean water loss by mosses and lichens at 40%

The loss of water in a desiccating atmosphere (c.40% r.h. at 10°C) and uptake of water from a saturated atmosphere (100% r.h. at 10°C) was recorded at intervals over periods of many hours or days in the dominant mosses and macroiichens occurring near the Australian Casey Station. Wilkes Land, continental Antarctica. While major differences exist in the water holding capacity and rates of water loss between mosses and lichens, the minimum levels attained after prolonged exposure to desiccating conditions are remarkably similar. By contrast, the volume of water absorbed from a saturated atmosphere is very similar in both groups of cryptogams. Morphological and anatomical characters are responsible for many of the differences, both between species, and within species exhibiting different growth features. Thus, significantly larger amounts of water are held by colonies of Bryum algens with a dense tomentum of rhizoids than those with sparse rhizoids; similarly, the rhizinate Umbilicaria aprina held a greater volume of water than the erhizinate U. decussata. The filamentous mat form of Alectoria mimiscula permits a much higher water content to be attained than in the coarser fruticose forms of Usnea sphacelata and U. antarctica. The dense shoot arrangement in Schistidium antarcticum accounts for the high water holding capacity in the hydric turf form whereas the less densely packed shoots and thicker cell walls of the xeric cushion form maintain a lower water content. The rate of water loss (as percentage dry weight) was much faster in the turf form of Schistidium and tomenlose form of Bryum, although this trend was reversed when expressed as percentage of the initial water content. Minimal water contents arc achieved by the lichens in desiccating conditions within 6-12 hours, whereas the mosses take several times longer. The water relations characteristics of these cryptogams are considered in the light of their distribution in the field and of their metabolic activity under prevailing Antarctic conditions.