Paleogene and Neogene sponge spicules from DSDP Leg 71 holes

Sponge spicules found in Eocene, Oligocene, and middle Miocene sediments at DSDP Leg 71 Sites 511,512, and 513 belong to two classes; Hyalospongiae and Demospongiae. On the basis of spicule types and stratigraphic characteristics, spicule assemblages are distinguished for the lower and upper units of the middle Eocene, the upper Eocene, the lower Oligocene, the lower and upper units of the upper Oligocene, and the middle Miocene. In addition, 23 types and 76 dimensional varieties of spicules are described.

Cenozoic planktonic foraminifera of the Falkland Plateau and Argentine Basin

Sites 511 and 512 (Falkland Plateau) and 513 (Argentine Basin) penetrated calcareous-siliceous oozes of the middle and upper Eocene and lower Oligocene with rather numerous planktonic foraminifers. Upper Oligocene, Miocene, Pliocene, and Quaternary sections are composed mostly of siliceous sediments (Sites 511-514) where planktonic foraminifers are rare or absent. High-latitude planktonic foraminifers of the Austral Province are characterized by impoverished assemblages - only representatives of Globigerina, Globigerinita, Globorotaloides, and Globorotalia with a rounded peripheral margin are found. In the Paleogene, these species are supplemented, in lesser amounts, by representatives of Globigerapsis, Acarinina, Pseudogloboquadrina, Pseudohastigerina, and Chiloguembelina. Assemblages of planktonic foraminifers have low stratigraphic resolution, especially in the upper Oligocene-Quaternary. This reflects the generally deteriorating Cenozoic climate, which evinced a sharp change in the upper Oligocene that is connected with initiation of the circum-Antarctic current near the Paleogene/Neogene boundary. Comparison of Paleogene and Neogene planktonic foraminifers of the South Atlantic (Falkland Plateau, Argentine Basin, 46-51°S) and the North Atlantic (Rockall Plateau, 55-56°N) indicates that the South Atlantic climate was much colder than that of the same latitudes of the North Atlantic. Paleogene oozes of the Falkland Plateau rest unconf ormably on Maestrichtian sediments and in their turn are overlain unconformably by Neogene-Quaternary oozes. Cenozoic sections are stratigraphically discontinuous: periods of intensive biogenic sedimentation resulting in a thick succession of sediments alternated with periods of nondeposition and strong erosion that resulted in hiatuses and unconformities. In the Argentine Basin, Oligocene calcareous-siliceous oozes rest on basalts of the oceanic basement; they are replaced upward in the section by Neogene-Quaternary siliceous oozes with some hiatuses. Planktonic foraminifers here clearly demonstrate the processes of oceanic subsidence and CCD fluctuations as well as Polar Front migrations during Cenozoic time. Fifty species of planktonic foraminifers are discussed and illustrated.

Benthic foraminifers in Mesozoic and Cenozoic sediments of the southwestern Atlantic

Benthic foraminiferal assemblages in Mesozoic and Cenozoic sediments were studied at Sites 511, 512, 513, and 514 drilled during Leg 71 in the southwestern Atlantic on the Maurice Ewing Bank and in the Argentine Basin. Benthic foraminifers in almost all stratigraphic subdivisions of Sites 511 and 512 reflect the gradual subsidence of the Falkland Plateau from shelf depths in the Barremian-Albian, when a semiclosed basin with restricted circulation of water masses and anaerobic conditions existed, to lower bathyal depths in the Late Cretaceous and Cenozoic, with an abrupt acceleration at the boundary of Lower and Upper Cretaceous. The composition, distribution, and preservation of Late Cretaceous assemblages of benthic foraminifers suggest considerable fluctuations of the foraminiferal lysocline and the CCD. This is evidenced by dissolution facies and foraminiferal assemblages in which agglutinated and resistant calcareous forms predominated during high stands of the CCD and by calcareous facies in which rich assemblages of calcareous species predominated during low stands. The highest position of the CCD on the Plateau (less than 1500-2000 m) was in the late Cenomanian, Turonian, and Coniacian. In the Santonian and Campanian the CCD was at depths below 1500-2000 meters. At the end of the Campanian the CCD shifted again to depths comparable with those of Cenomanian and Turonian time. In the latest Campanian and the Maestrichtian the CCD was low and nanno-foraminiferal oozes with a rich assemblage of benthic foraminifers accumulated. Foraminiferal assemblages at Sites 513 and 514 in the Argentine Basin also testify to oceanic subsidence from lower bathyal depths in the Oligocene to abyssal ones at present. This process was complicated by the influence of geographical migrations of the Polar Front caused by extensions of the ice sheet in the Antarctic after the opening of the Drake Passage during the Oligocene. In Mesozoic and Cenozoic deposits of the Falkland Plateau and the Argentine Basin seven assemblages of benthic foraminifers were distinguished by age: early-middle Albian, middle-late Albian, Late Cretaceous (including four groups), middle Eocene, late Eocene-early Miocene, middle-late Miocene, and Pliocene-Quaternary. The Albian assemblages contain many species common to the foraminiferal fauna of the Austral Biogeographical Province. The Late Cretaceous assemblage contains, along with Austral species, species common to foraminifers of North America, Western Europe, the Russian platform, and the south of the U.S.S.R. Deep-sea cosmopolitan species prevail in Cenozoic assemblages.

Characterisation of enterovirus 71 replication kinetics in human colorectal cell line, HT29

Hand, Foot and Mouth Disease (HFMD), a contagious viral disease that commonly affects infants and children with blisters and flu like symptoms, is caused by a group of enteroviruses such as Enterovirus 71 (EV71) and coxsackievirus A16 (CA16). However some HFMD caused by EV71 may further develop into severe neurological complications such as encephalitis and meningitis. The route of transmission was postulated that the virus transmit from one person to another through direct contact of vesicular fluid or droplet from the infected or via faecal-oral route. To this end, this study utilised a human colorectal adenocarcinoma cell line (HT29) with epithelioid morphology as an in vitro model for the investigation of EV71 replication kinetics. Using qPCR, viral RNA was first detected in HT29 cells as early as 12 h post infection (hpi) while viral protein was first detected at 48 hpi. A significant change in HT29 cells’ morphology was also observed after 48 hpi. Furthermore HT29 cell viability also significantly decreased at 72 hpi. Together, data from this study demonstrated that co-culture of HT29 with EV71 is a useful in vitro model to study the pathogenesis of EV71

Elucidating the host–pathogen interaction between human colorectal cells and invading Enterovirus 71 using transcriptomics profiling

Enterovirus 71 (EV71) is one of the main etiological agents for Hand, Foot and Mouth Disease (HFMD) and has been shown to be associated with severe clinical manifestation. Currently, there is no antiviral therapeutic for the treatment of HFMD patients owing to a lack of understanding of EV71 pathogenesis. This study seeks to elucidate the transcriptomic changes that result from EV71 infection. Human whole genome microarray was employed to monitor changes in genomic profiles between infected and uninfected cells. The results reveal altered expression of human genes involved in critical pathways including the immune response and the stress response. Together, data from this study provide valuable insights into the host–pathogen interaction between human colorectal cells and EV71.

Elucidating the host-pathogen interactions between in vitro human cells and enterovirus 71 in Hand, Foot and Mouth Disease (HFMD)

This study has provided further understanding of the pathogenesis of EV71, one of the major etiological agents associated with significant mortality in Hand, Foot and Mouth disease. Elucidating the host-pathogen interaction and the mechanism that the virus uses to bypass host defence systems to establish infection will aid in the development of potential antiviral therapeutics against EV71.

Droplet digital PCR as a useful tool for the quantitative detection of Enterovirus 71

Hand, foot and mouth disease (HFMD) is a contagious viral disease that frequently affects infants and children and present with blisters and flu-like symptoms. This disease is caused by a group of enteroviruses such as enterovirus 71 (EV71) and coxsackievirus A16 (CA16). However, unlike other HFMD causing enteroviruses, EV71 have also been shown to be associated with more severe clinical manifestation such as aseptic meningitis, brainstem and cerebellar encephalitis which may lead to cardiopulmonary failure and death. Clinically, HFMD caused by EV71 is indistinguishable from other HFMD causing enteroviruses such as CA16. Molecular diagnosis methods such as the use of real-time PCR has been used commonly for the identification of EV71. In this study, two platforms namely the real-time PCR and the droplet digital PCR were compared for the detection quantitation of known EV71 viral copy number. The results reveal accurate and consistent results between the two platforms. In summary, the droplet digital PCR was demonstrated to be a promising technology for the identification and quantitation of EV71 viral copy number.