A proteomic view of probiotic Lactobacillus rhamnosus GG

Lactobacillus rhamnosus GG is a probiotic bacterium that is known worldwide. Since its discovery in 1985, the health effects and biology of this health-promoting strain have been researched at an increasing rate. However, knowledge of the molecular biology responsible for these health effects is limited, even though research in this area has continued to grow since the publication of the whole genome sequence of L. rhamnosus GG in 2009. In this thesis, the molecular biology of L. rhamnosus GG was explored by mapping the changes in protein levels in response to diverse stress factors and environmental conditions. The proteomics data were supplemented with transcriptome level mapping of gene expression. The harsh conditions of the gastro-intestinal tract, which involve acidic conditions and detergent-like bile acids, are a notable challenge to the survival of probiotic bacteria. To simulate these conditions, L. rhamnosus GG was exposed to a sudden bile stress, and several stress response mechanisms were revealed, among others various changes in the cell envelope properties. L. rhamnosus GG also responded in various ways to mild acid stress, which probiotic bacteria may face in dairy fermentations and product formulations. The acid stress response of L. rhamnosus GG included changes in central metabolism and specific responses related to the control of intracellular pH. Altogether, L. rhamnosus GG was shown to possess a large repertoire of mechanisms for responding to stress conditions, which is a beneficial character of a probiotic organism. Adaptation to different growth conditions was studied by comparing the proteome level responses of L. rhamnosus GG to divergent growth media and to different phases of growth. Comparing different growth phases revealed that the metabolism of L. rhamnosus GG is modified markedly during shift from the exponential to the stationary phase of growth. These changes were seen both at proteome and transcriptome levels and in various different cellular functions. When the growth of L. rhamnosus GG in a rich laboratory medium and in an industrial whey-based medium was compared, various differences in metabolism and in factors affecting the cell surface properties could be seen. These results led us to recommend that the industrial-type media should be used in laboratory studies of L. rhamnosus GG and other probiotic bacteria to achieve a similar physiological state for the bacteria as that found in industrial products, which would thus yield more relevant information about the bacteria. In addition, an interesting phenomenon of protein phosphorylation was observed in L. rhamnosus GG. Phosphorylation of several proteins of L. rhamnosus GG was detected, and there were hints that the degree of phosphorylation may be dependent on the growth pH.

An integrated model for optimal reservoir operation for irrigation of multiple crops

An integrated model is developed, based on seasonal inputs of reservoir inflow and rainfall in the irrigated area, to determine the optimal reservoir release policies and irrigation allocations to multiple crops. The model is conceptually made up of two modules, Module 1 is an intraseasonal allocation model to maximize the sum of relative yields of all crops, for a given state of the system, using linear programming (LP). The module takes into account reservoir storage continuity, soil moisture balance, and crop root growth with time. Module 2 is a seasonal allocation model to derive the steady state reservoir operating policy using stochastic dynamic programming (SDP). Reservoir storage, seasonal inflow, and seasonal rainfall are the state variables in the SDP. The objective in SDP is to maximize the expected sum of relative yields of all crops in a year. The results of module 1 and the transition probabilities of seasonal inflow and rainfall form the input for module 2. The use of seasonal inputs coupled with the LP-SDP solution strategy in the present formulation facilitates in relaxing the limitations of an earlier study, while affecting additional improvements. The model is applied to an existing reservoir in Karnataka State, India.

Studies towards synthesis, evolution and alignment characteristics of dense, millimeter long multiwalled carbon nanotube arrays

We report the synthesis of aligned arrays of millimeter long carbon nanotubes (CNTs), from benzene and ferrocene as the molecular precursor and catalyst respectively, by a one-step chemical vapor deposition technique. The length of the grown CNTs depends on the reaction temperature and increases from similar to 85 mu m to similar to 1.4 mm when the synthesis temperature is raised from 650 to 1100 degrees C, while the tube diameter is almost independent of the preparation temperature and is similar to 80 nm. The parallel arrangement of the CNTs, as well as their tube diameter can be verified spectroscopically by small angle X-ray scattering (SAXS) studies. Based on electron diffraction scattering (EDS) studies of the top and the base of the CNT films, a root growth process can be deduced.

Macroporous three-dimensional graphene oxide foams for dye adsorption and antibacterial applications

Several reports illustrate the wide range applicability of graphene oxide (GO) in water remediation. However, a few layers of graphene oxide tend to aggregate under saline conditions thereby reducing its activity. The effects of aggregation can be minimized by having a random arrangement of GO layers in a three dimensional architecture. The current study emphasizes the potential benefits of highly porous, ultralight graphene oxide foams in environmental applications. These foams were prepared by a facile and cost effective lyophilization technique. The 3D architecture allowed the direct use of these foams in the removal of aqueous pollutants without any pretreatment such as ultrasonication. Due to its macroporous nature, the foams exhibited excellent adsorption abilities towards carcinogenic dyes such as rhodamine B (RB), malachite green (MG) and acriflavine (AF) with respective sorption capacities of 446, 321 and 228 mg g(-1) of foam. These foams were also further investigated for antibacterial activities against E. coli bacteria in aqueous and nutrient growth media. The random arrangement of GO layers in the porous foam architecture allowed it to exhibit excellent antibacterial activity even under physiological conditions by following the classical wrapping-perturbation mechanism. These results demonstrate the vast scope of GO foam in water remediation for both dye removal and antibacterial activity.

Estudo de espécie nativa da restinga para plantio em telhados de construção de interesse social.

O alto crescimento populacional tem desencadeado uma elevada ocupação das áreas urbanas com a expansão de edificações e estradas causando alterações no meio ambiente com a consequente minimização das áreas verdes e da infiltração de água no solo. Estes fenômenos acarretam problemas como enxurradas, inundações, aumento da temperatura local e diminuição da biodiversidade com inúmeros efeitos adversos, tanto econômicos quanto ambientais e sociais. Uma das alternativas para minimizar estes problemas é a construção de telhados verdes, que tem como uma das principais funções retardar o escoamento devido ao aumento da infiltração e retenção da água das chuvas atenuando o efeito avassalador das enchentes e das zonas de calor, principalmente em climas muito quentes, além de colaborar para recuperação de ecossistemas, através do replantio de mudas. Este projeto faz parte de um conjunto de ações integradas de cidadania e inclusão social na região hidrográfica da baixada de Jacarepaguá, especificamente envolvendo a Comunidade da Vila Cascatinha, em Vargem Grande, a fim de gerar subsídios para políticas públicas em áreas de assentamentos informais, integrado ao projeto HIDROCIDADES (CNPq, FAPERJ, FINEP), que visa a conservação da água em meios urbanos e periurbanos associado à cidadania, inclusão social e melhoria da qualidade de vida nas grandes cidades. Este trabalho utiliza uma tecnologia adaptada dos telhados verdes para edificação popular (telhado de fibrocimento) muito comum no Brasil, com o objetivo de verificar uma espécie com potencial de geração de renda (visando o social) de ecossistema regionais como restinga, em edificação; analisar o crescimento e biomassa da espécie de restinga cultivada em telhados; e avaliar qualidades das mídias em função do plantio em análise de armazenamento (retenção) de água no solo. A partir da metodologia empregada na implantação dos telhados verdes em habitações populares, os resultados obtidos são desenvolvimento da espécie Ipomoea pes caprae Brasiliensis, em três tipos de mídias de crescimento e também eficiência dessas mídias no escoamento superficial. Observou-se retenção de 69,24L de água para o bagaço de cana de açúcar e 64,7L para a fibra de coco. E foi observado também um retardo da ocorrência do pico de até 14 minutos no telhado vegetado em relação ao telhado controle (convencional).

Efeito alelopático das folhas de Schinus terebinthifolius Raddi em espécies nativas da restinga de Massambaba

Schinus terebinthifolius Raddi (Anacardiaceae) é uma espécie nativa da América do Sul com grande distribuição geográfica e muito comum em áreas de restinga. Sua grande plasticidade ecológica e boa interação biótica a torna espécie-chave na restauração de ambientes, porém, sua dominância pode estar relacionada à liberação de compostos alelopáticos. O objetivo do estudo foi avaliar o potencial alelopático dos extratos aquosos e óleos essenciais de folhas de Schinus terebinthifolius nas diferentes estações do ano sobre espécies-alvo nativas da restinga (Cereus fernambucensis, Erythroxylum ovalofolium, Pilosocereus arrabidae), uma espécie agrícola (Lactuca sativa) e nela própria (autoalelopatia). Para isso, suas folhas foram coletadas sazonalmente na restinga de Massambaba para o preparo dos extratos aquosos e extração dos óleos essenciais. Os extratos aquosos foram obtidos através da secagem das folhas a 60 C, trituração em liquidificador, diluição em água destilada e filtração, obtendo as concentrações de 5, 10, 15 e 20%. As extrações dos óleos foram realizadas através da hidrodestilação de 300 g de folhas frescas. A análise da composição dos óleos essenciais foi realizada através de cromatografia gasosa utilizando fibra SPME. O efeito fitotóxico foi avaliado nas espécies-alvo através da porcentagem de germinação, velocidade de germinação, crescimento aéreo e radicular, condutividade elétrica e massa seca. O efeito alelopático dos extratos aquosos foi observado em todas as espécies-alvo, principalmente sobre as espécies nativas. Esse efeito variou nas estações do ano de forma dose-dependente e espécie-específica. Os óleos essenciais de S. terebinthifolius também foram capazes de inibir a germinação e crescimento das espécies-alvo, e, da mesma forma que os extratos aquosos, esses efeitos variaram nas estações do ano e para cada espécie. Sugere-se que essas diferenças estejam relacionadas às fenofases de S. terebinthifolius e condições ambientais da restinga. Esse efeito fitotóxico, se comprovado em campo, pode restringir a utilização de S. terebinthifolius na restauração de ambientes.

OsRMC基因调控水稻根生长发育的机理研究

实验室前期工作证明OsRAA1在玉米泛素启动子驱动下组成型表达，可以抑制水稻初生根的生长，促进不定根的形成，形成不同程度螺旋状的初生根，根的向地性反应减缓，这些表型和野生型水稻用生长素处理的表型类似，而且OsRAA1基因的转录受生长素诱导，这些结果表明OsRAA1可能参与了生长素的信号转导途径。但这些表型产生的机理还不是很清楚。在水稻中，茉莉酸在根发育过程中的作用多为生理实验的报道;拟南芥中的研究表明生长素信号转导和茉莉酸信号转导可能都受26S蛋白酶体的调控。由此我们推测茉莉酸在根的发育过程中可能也起着同样的促进作用。本论文在超表达OsRAA1水稻基础上旨在克隆新基因，并对新基因功能进行研究，以探讨茉莉酸在水稻根发育过程中的分子机理，并对生长素和茉莉酸信号转导的关系进行探讨。 　　首先运用双向电泳技术结合质谱分析技术，在超表达OsRAA1水稻背景下发现了受体激酶家族DUF26的一个成员明显下调，我们命名为OsRMC（Oryza sativa Root Meander and Curling，AAL87185），Western杂交进一步证明了这个结果。 　　OsRMC位于4号染色体，信息学分析表明只有一个拷贝，没有内含子，ORF阅读框为777bp，编码的蛋白分子量为27.9 kDa，等电点（pI）为5.01。对该蛋白进行同源性比较发现，其含有2个C-X8-C-X2-C基序（Cys-rich repeat, CRR）即半胱氨酸富集区，其中第四个半胱氨酸残基不保守，该基序会形成二硫键，编码两个未知功能的DUF26（Domain Unknown Function 26）结构域。OsRMC由一个信号肽和两个CRR区组成，但没有跨膜区和激酶区。RT-PCR显示OsRMC可能是组成型表达的基因;亚细胞实验表明OsRMC是膜定位的蛋白。Western blot显示OsRMC受茉莉酸诱导表达，受生长素的抑制。 　　RNAiOsRMC转基因水稻在暗处培养时，抑制了初生根的生长，使侧根数目减少，但促进了不定根的生长和数目的增加;第二叶鞘变短，这些表型和前人报道的外源茉莉酸处理野生型的表型一致。转基因对生长素信号转导和合成没有影响，但初生根和第二叶鞘对外源茉莉酸更加敏感，说明RNAiOsRMC转基因水稻可能增强了茉莉酸信号转导途径。分析转基因水稻的茉莉酸信号转导途径部分相关基因的表达变化，根中受茉莉酸信号转导特异诱导的病原相关基因RSOsPR10的表达明显增多，而JAmyb和OsNDPK1的表达没有变化，证实转基因增强了茉莉酸信号转导其中的一个路径;进一步分析茉莉酸合成途径12-OXO-PDA（12-氧代-顺，顺-10，15-植物二烯酸）还原酶基因OsOPR的表达发现与野生型没有明显差别，说明转基因可能没有影响体内的茉莉酸合成途径。RNAiOsRMC转基因水稻的初生根比野生型的更容易发生弯曲，实验表明培养过程中茉莉酸和背触反应（negative thigmotropism）共同作用使转基因的初生根更容易发生卷曲，而光信号会增强卷曲程度。但RNAiOsRMC转基因水稻并没有影响根的向地性，暗示RNAiOsRMC转基因可能增强了根的回旋运动或（和）背触反应，从而促进了根的弯曲和卷曲。这些结果证明OsRMC参与的茉莉酸信号转导过程在水稻根的发育、弯曲和卷曲过程中起着重要的促进作用。通过对超表达OsRAA1和RNAiOsRMC转基因水稻的分析，说明水稻中存在着生长素信号转导促进茉莉酸信号转导的途径。 　　综合以上实验结果认为，OsRAA1调控了受体激酶家族DUF26的一个成员OsRMC，使其表达量降低，该过程增强了茉莉酸信号转导途径;确认了受体激酶家族DUF26的基因具有重要的生物学功能，证实了OsRMC调控的茉莉酸信号转导在水稻根系发育、根弯曲和卷曲过程中具有重要的促进作用;证明水稻中存在着生长素信号转导促进茉莉酸信号转导的途径，为完善各种植物激素调控水稻根系发育的网络提供了新的实验证据。 　　 　　

不同灌溉制度对玉米根系生长及水分利用效率的影响

为了探讨不同灌溉制度对玉米根系生长和水分利用效率的影响及基因型间差异,在大型活动防雨棚和棚外田间条件下,利用一组玉米遗传材料杂交种户单四号、父本803和母本天四进行了研究。结果发现玉米杂交种在根系生长、分布和水分利用效率上表现出显著的杂种优势。在充分灌溉条件下,玉米杂交种在浅层的根长密度大于亲本,但在水分亏缺条件下,玉米杂交种根长密度在整个剖面上都显著大于亲本;同一玉米基因型在不同的灌溉制度下根长密度在土壤剖面的分布也不同,拔节期不灌溉条件下玉米根系在深层土壤中的分布较充分灌溉条件下大,保证了玉米对深层土壤水分的充分吸收,而后期灌水延缓了表层根系生长的衰退,产生明显的补偿效应;拔节期干旱而抽雄期和灌浆期灌水显著提高了3种基因型玉米的水分利用效率。通过合理灌溉优化玉米根系分布特性以提高玉米吸水能力和水分利用效率,是节水栽培上的可行途径。

模拟增温与UV-B 辐射增强对云杉种子萌发和幼苗生长的影响

臭氧层损耗导致的地球表面UV-B辐射增强以及温室气体增多引起的气候变暖是当今两大全球环境问题。UV-B辐射增强和气候变暖对陆地植物和生态系统产生深远影响，并已成为全球变化研究的重要议题。作为世界第三极的青藏高原，UV-B 辐射增强以及气候变暖现象尤为突出。本试验所在林区是青藏高原东缘的主要林区，具有大面积的亚高山人工针叶成熟林，在全球变化背景下该森林的天然更新潜力如何是急待回答的重要问题。基于此，本研究围绕森林树种的种子和幼苗这一更新的重要阶段，开展了气候变暖、UV-B辐射增强和联合胁迫对云杉种子萌发及幼苗定居影响的研究，旨在全球变化背景下，探讨全球变暖、UV-B 辐射增强和联合胁迫是否对西南地区大面积人工亚高山针叶林更新的种子萌发和幼苗定居阶段产生影响。 本文以青藏高原东缘亚高山针叶林主要树种云杉为研究对象，研究云杉种子萌发及幼苗的生长和生理对UV-B辐射增强与气候变暖的响应。采用UV-B荧光灯（UV-lamp）来模拟增强的UV-B 辐射，此外，采用开顶式有机玻璃罩（OTCs）来模拟气候变暖。本试验包括四个处理：（1）大气UV-B 辐射+大气温度（C）；（2）大气UV-B 辐射+模拟气候变暖（W）；（3）增强的UV-B辐射+大气温度（U）；（4）增强的UV-B辐射+模拟气候变暖（U+W）。 根据本试验结果，UV-B辐射增强对云杉种子萌发没有显著影响，它对萌发云杉幼苗的影响主要体现在幼叶展开以后。根据两年的试验结果，增强的UV-B辐射降低了云杉幼苗抗氧化酶活性，降低了抗氧化物质的含量，此外，造成了膜质的过氧化，表现为MDA在针叶中的积累。增强的UV-B照射处理萌发云杉幼苗两年后，幼苗的生长受到显著抑制。我们的结果显示，OTCs分别提高了空气（10 cm）和土壤（5 cm）温度1.74℃和0.94 ℃。增温显著地促进了云杉种子提前萌发，提高了萌发速率和萌发比率，而且，明显地促进了幼苗的生长，表现为株高和生物量累积的显著增长。此外增温还有利于云杉幼苗根的伸长生长以及生物量的累积，这可以使云杉幼苗更好地利用土壤中的水分和营养元素。 根据本试验结果，温度升高显著地促进了增强UV-B辐射下云杉萌发幼苗的生长，这说明，温度升高缓解了UV-B辐射增强对云杉萌发幼苗的负面影响。这种缓解作用可能是温度升高对UV-B辐射增强处理下幼苗的抗氧化系统活性改善的结果。温度升高还缓解了高UV-B辐射对云杉幼苗根生长的抑制作用，这也可能是增温缓解伤害的原因之一。此外，根据我们的试验结果，增温与UV-B辐射增强联合作用（U+W）下云杉萌发幼苗的生长状况好于大气温度与大气UV-B辐射联合（C）处理，表现为株高、地径、根长和生物量积累均高于C处理，因此可以推断，UV-B辐射增强与气候变暖同时存在对萌发幼苗在两年之内的生长没有产生抑制作用，也就是说，气候变暖的缓解作用完全弥补了UV-B辐射增强的有害作用。 同样，增强的UV-B辐射显著影响了云杉幼苗的光合作用，表现为净光合速率（Pn）和表观量子效率（Φ）的提高，此外，根据我们的试验结果，它还造成了PSII的光抑制。增强的UV-B辐射显著抑制了云杉幼苗对营养元素的吸收，表现为大量营养元素、碳、钙、镁和锌含量的降低，但是，它却显著促进了铁在植株体内的积累。增温显著地提高了净光合速率，但是，它对光系统II（PSII）的光化学效率影响不大。温度升高缓解了UV-B增强对云杉幼苗光合作用的伤害，表现为净光合速率、表观量子效率以及PSII光化学效率的提高。此外，温度升高还缓解了UV-B辐射增强对离子吸收的抑制作用。 Enhanced UV-B radiation due to the reduction of O3 layer and global warming induced by increased greenhouse gases in the air have become the two pressing aspects of global climate changes. Moreover, enhanced UV-B radiation and warming have profound and long-term impacts on terrestrial plants and ecosystems, and the studies focusing on the two factors have attracted many attentions. Qinghai-Tibetan Plateau is the third in elevation in the world, and enhanced UV-B radiation and climate warming are especially prominent in this region. Our research located in the main forest belt in the eastern Qinghai-Tibetan Plateau where large areas of subalpine coniferous forests distributed. Based on that, we carried out a research to study the effects of enhanced UV-B radiation and climate warming on seed germination and seedlings growth of seedlings which are the important basic stage in forest regeneration. This research was arranged by a complete factorial design and included two factors (UV-B radiation and temperature) with two levels. The UV-lamps were used to manipulate the supplemental UV-B radiation and open-top chambers (OTCs) were adopted to increase temperature. The four treatments were: (1) C, ambient UV-B without warming; (2) U, enhanced UV-B without warming; (3) W, ambient UV-B with OTCs warming; (4) U+W, enhanced UV-B with OTCs warming. The main results were exhibited as follows: 1. Based on our results in this research, OTCs increased temperature on average 1.74℃ in air (10 cm above ground) and 0.92 ℃ in soil (5 cm beneath ground). Furthermore, OTCs also slightly reduced soil moisture and relative air humidity, however, the differences was not statistically significant. 2. Our results showed that enhanced UV-B had no significant effects on the seeds germination of P. asperata. Enhanced UV-B affected sprouts of P. asperata until the needles unfolded. During two years, enhanced UV-B inhibited the efficiency of the antioxidant defense systems, and as a result, it induced oxidant stress and the accumulation of MDA in needles. After two years of exposure to enhanced UV-B, the growth of P. asperata sprouts was markedly restrained compared with those under ambient UV-B radiation and temperature (C). Warming significantly stimulated the germination speed and increased the germination rate of P. asperata seeds. In the next place, it prominently facilitated the growth of P. asperata sprouts, represented as improvements in stem elongation and biomass accumulation. Furthermore, warming also increased root growth of P. asperata sprouts, which could made sprouts more efficient to use water and nutrient elements in soil. In this research, warming alleviated the deleterious effects of enhanced UV-B on P. asperata sprouts. It markedly stimulated the growth of P. asperata sprouts exposed to enhanced UV-B. The ease effects of warming on the abilities of the antioxidant defense systems might account for its amending effects on growth. After two years of exposure to enhanced UV-B radiation and warming, the growth of P. asperata sprouts was better than those under ambient UV-B radiation without warming (C), which could be seen from the higher plant height, basal diameter, root length and total biomass accumulation compared with C. 3. Enhanced UV-B radiation significantly influenced the photosynthesis processes of two-year old P. asperata seedlings. Our results showed that enhanced UV-B reduced the net photosynthetic rate (Pn) and the apparent quantum efficiency (Φ), and induced photoinhibition of photosynthetic system II (PSII). Enhanced UV-B significantly decreased the concentration of nitrogen (N), phosphorous (P), potassium (K), calcium (Ca), magnesium (Mg) and zinc (Zn), however, it increased the accumulation of iron (Fe) in the whole plant of P. asperata seedlings. Warming significantly stimulated Pn of P. asperata seedlings but it had no prominent impacts on the photochemical efficiency of PSII. In our research, warming also alleviated the harmful effects of enhanced UV-B on photosynthesis and absorption of ions of P. asperata seedlings. It increased Pn, Φ and the photochemical efficiency of PSII in seedlings exposed to enhanced UV-B. Moreover, warming also increased the absorption of ions of the seedlings exposed to enhanced UV-B radiation.

Cytogenetic Effects of Low Doses of Energetic Carbon Ions on Rice After Exposures of Dry Seeds, Wet Seeds and Seedlings

In order to investigate the biological effects of heavy ion radiation at low closes and the different radiosensitivities of growing and non-growing plants. rice at different lift stages (dry seed, wet seed and seedling) were exposed to carbon ions at closes of 0 02, 0.2, 2 and 20 Gy. Radiobiological effects on survival, root growth and mitotic activity, as well as the induction of chromosome aberrations in root meristem. were observed The results show that radiation exposure induces a stimulatory response at lower close and an inhibitory response at higher dose on the mitotic activity of wet seeds and seedlings Cytogenetic damages are induced in both seeds and seedlings by carbon ion radiation at doses as low as 0.02 Gy Compared with seedlings. seeds are more resistant to the lethal damage and the growth rate damage by high doses of carbon ions, but are more sensitive to cytogenetic damage by low closes of irradiation Different types of radiation induced chromosome aberrations are observed between seeds and seedlings. Based on these results, the relationships between low close heavy ion-induced biological effects and the biological materials are discussed.

土壤水分与氮肥对玉米根系生长的影响

利用田间小区试验研究了不同土壤水分条件下N肥对根系生长(根长、根重和根冠比)的影响。结果表明,玉米拔节期和开花期无论水分条件如何,施N肥可增加其总根长、表层根长和根重并使根冠比下降;灌浆期施N肥可增加总根长和表层根长,但正常水分条件下N肥使根重和根冠比下降,而干旱条件下N肥对根重和根冠比则无影响。不同处理根冠比大小与N吸收和分配有很大关系。

A Tissue-Engineered Microvascular System to Evaluate Vascular Progenitor Cells for Angiogenic Therapies

The ability of tissue engineered constructs to replace diseased or damaged organs is limited without the incorporation of a functional vascular system. To design microvasculature that recapitulates the vascular niche functions for each tissue in the body, we investigated the following hypotheses: (1) cocultures of human umbilical cord blood-derived endothelial progenitor cells (hCB-EPCs) with mural cells can produce the microenvironmental cues necessary to support physiological microvessel formation in vitro; (2) poly(ethylene glycol) (PEG) hydrogel systems can support 3D microvessel formation by hCB-EPCs in coculture with mural cells; (3) mesenchymal cells, derived from either umbilical cord blood (MPCs) or bone marrow (MSCs), can serve as mural cells upon coculture with hCB-EPCs. Coculture ratios between 0.2 (16,000 cells/cm2) and 0.6 (48,000 cells/cm2) of hCB-EPCs plated upon 3.3 µg/ml of fibronectin-coated tissue culture plastic with (80,000 cells/cm2) of human aortic smooth muscle cells (SMCs), results in robust microvessel structures observable for several weeks in vitro. Endothelial basal media (EBM-2, Lonza) with 9% v/v fetal bovine serum (FBS) could support viability of both hCB-EPCs and SMCs. Coculture spatial arrangement of hCB-EPCs and SMCs significantly affected network formation with mixed systems showing greater connectivity and increased solution levels of angiogenic cytokines than lamellar systems. We extended this model into a 3D system by encapsulation of a 1 to 1 ratio of hCB-EPC and SMCs (30,000 cells/µl) within hydrogels of PEG-conjugated RGDS adhesive peptide (3.5 mM) and PEG-conjugated protease sensitive peptide (6 mM). Robust hCB-EPC microvessels formed within the gel with invasion up to 150 µm depths and parameters of total tubule length (12 mm/mm2), branch points (127/mm2), and average tubule thickness (27 µm). 3D hCB-EPC microvessels showed quiescence of hCB-EPCs (<1% proliferating cells), lumen formation, expression of EC proteins connexin 32 and VE-cadherin, eNOS, basement membrane formation by collagen IV and laminin, and perivascular investment of PDGFR-β+/α-SMA+ cells. MPCs present in <15% of isolations displayed >98% expression for mural markers PDGFR-β, α-SMA, NG2 and supported hCB-EPC by day 14 of coculture with total tubule lengths near 12 mm/mm2. hCB-EPCs cocultured with MSCs underwent cell loss by day 10 with a 4-fold reduction in CD31/PECAM+ cells, in comparison to controls of hCB-EPCs in SMC coculture. Changing the coculture media to endothelial growth media (EBM-2 + 2% v/v FBS + EGM-2 supplement containing VEGF, FGF-2, EGF, hydrocortisone, IGF-1, ascorbic acid, and heparin), promoted stable hCB-EPC network formation in MSC cocultures over 2 weeks in vitro, with total segment length per image area of 9 mm/mm2. Taken together, these findings demonstrate a tissue engineered system that can be utilized to evaluate vascular progenitor cells for angiogenic therapies.

Rice-arsenate interactions in hydroponics: a three-gene model for tolerance

In this study, the genetic mapping of the tolerance of root growth to 13.3 muM arsenate [As(V)] using the BalaxAzucena population is improved, and candidate genes for further study are identified. A remarkable three-gene model of tolerance is advanced, which appears to involve epistatic interaction between three major genes, two on chromosome 6 and one on chromosome 10. Any combination of two of these genes inherited from the tolerant parent leads to the plant having tolerance. Lists of potential positional candidate genes are presented. These are then refined using whole genome transcriptomics data and bioinformatics. Physiological evidence is also provided that genes related to phosphate transport are unlikely to be behind the genetic loci conferring tolerance. These results offer testable hypotheses for genes related to As(V) tolerance that might offer strategies for mitigating arsenic (As) accumulation in consumed rice.

Can arsenic-phytochelatin complex formation be used as an indicator for toxicity in Helianthus annuus?

The formation of arsenic-phytochelatin (As-PC) complexes is thought to be part of the plant detoxification strategy for arsenic. This work examines (i) the arsenic (As) concentration-dependent formation of As-PC complex formation and (ii) redistribution and metabolism of As after arrested As uptake in Helianthus annuus. HPLC with parallel ICP-MS/ES-MS detection was used to identify and quantify the species present in plant extracts exposed to arsenate (As(V)) (between 0 and 66.7 micromol As l-1 for 24 h). At As concentrations below the EC50 value for root growth (22 micromol As l-1) As uptake is exponential, but it is reduced at concentrations above. Translocation between root and shoot seemed to be limited to the uptake phase of arsenic. No redistribution of As between root and shoot was observed after arresting As exposure. The formation of As-PC complexes was concentration-dependent. The amount and number of As-PC complexes increased exponentially with concentration up to 13.7 micromol As l-1. As(III)-PC3 and GS-As(III)-PC2 complexes were the dominant species in all samples. The ratio of PC-bound As to unbound As increased up to 1.3 micromol As l-1 and decreased at higher concentrations. Methylation of inorganic As was only a minor pathway in H. annuus with about 1% As methylated over a 32 d period. The concentration dependence of As-PC complex formation, amount of unbound reduced and oxidized PC2, and the relative uptake rate showed that As starts to influence the cellular metabolism of H. annuus negatively at As concentrations well below the EC50 value determined by more traditional means. Generally, As-PC complexes and PC-synthesis rate seem to be the more sensitive parameters to be studied when As toxicity values are to be estimated.

Phytochelatins are involved in differential arsenate tolerance in Holcus lanatus

Arsenate tolerance is conferred by suppression of the high-affinity phosphate/arsenate uptake system, which greatly reduces arsenate influx in a number of higher plant species. Despite this suppressed uptake, arsenate-tolerant plants can still accumulate high levels of As over their lifetime, suggesting that constitutive detoxification mechanisms may be required. Phytochelatins are thiol-rich peptides, whose production is induced by a range of metals and metalloids including arsenate. This study provides evidence for the role of phytochelatins in the detoxification of arsenate in arsenate-tolerant Holcus lanatus. Elevated levels of phytochelatin were measured in plants with a range of tolerance to arsenate at equivalent levels of arsenate stress, measured as inhibition of root growth. The results suggest that arsenate tolerance in H. lanatus requires both adaptive suppression of the high-affinity phosphate uptake system and constitutive phytochelatin production.