Compositional analysis for an unbiased measure of soil aggregation

Soil aggregation is an index of soil structure measured by mean weight diameter (MWD) or scaling factors often interpreted as fragmentation fractal dimensions (D-f). However, the MWD provides a biased estimate of soil aggregation due to spurious correlations among aggregate-size fractions and scale-dependency. The scale-invariant D-f is based on weak assumptions to allow particle counts and sensitive to the selection of the fractal domain, and may frequently exceed a value of 3, implying that D-f is a biased estimate of aggregation. Aggregation indices based on mass may be computed without bias using compositional analysis techniques. Our objective was to elaborate compositional indices of soil aggregation and to compare them to MWD and D-f using a published dataset describing the effect of 7 cropping systems on aggregation. Six aggregate-size fractions were arranged into a sequence of D-1 balances of building blocks that portray the process of soil aggregation. Isometric log-ratios (ilrs) are scale-invariant and orthogonal log contrasts or balances that possess the Euclidean geometry necessary to compute a distance between any two aggregation states, known as the Aitchison distance (A(x,y)). Close correlations (r>0.98) were observed between MWD, D-f, and the ilr when contrasting large and small aggregate sizes. Several unbiased embedded ilrs can characterize the heterogeneous nature of soil aggregates and be related to soil properties or functions. Soil bulk density and penetrater resistance were closely related to A(x,y) with reference to bare fallow. The A(x,y) is easy to implement as unbiased index of soil aggregation using standard sieving methods and may allow comparisons between studies. (C) 2012 Elsevier B.V. All rights reserved.

Comportamento compressivo de um nitossolo: efeito do tamanho de agregados, do teor de água e da pressão aplicada

A compactação do solo tem sido assunto de intensivas pesquisas nos últimos anos; no entanto, os mecanismos que implicam o processo de compactação dos solos agrícolas, ainda permanecem pouco conhecidos. A contribuição do tamanho de agregados do solo, bem como o efeito do teor de água e da pressão normal aplicada na compactação e pressão de pré-compactação do solo, foi investigada em um Nitossolo Vermelho eutrófico. Amostras de solo deformado, constituídas por agregados menores que 2,5 mm e de 9,3 a 19,4 mm, foram submetidas a ensaio de compressão uniaxial drenado. O índice de vazios e a pressão de pré-compactação foram avaliados. Os resultados obtidos mostram que o tamanho de agregados teve efeito no processo de compactação do solo. A mudança da compactação do solo pode ser prevista em função do estado inicial do solo, da pressão aplicada e do teor de água.

Beneficiamento de sementes de café e efeitos na qualidade física

A pesquisa foi realizada com o objetivo de verificar a possibilidade de uso da máquina de pré-limpeza, da máquina de limpeza e classificação (ventiladores e peneiras) e da mesa densimétrica para o beneficiamento de sementes de café e, paralelamente, avaliar seus efeitos na qualidade física do lote. Para essa finalidade, um lote de sementes de café arábica 'Catuaí Amarelo IAC 62' foi submetido ao beneficiamento nesses três equipamentos, em diversas combinações. As frações retidas pelas peneiras 22/64 e 20/64 avos de polegada, na máquina de ventiladores e peneiras, constituíram a maior parte do lote e foram processadas, separadamente, em mesa densimétrica. Foram realizadas avaliações de pureza física, massa de mil sementes, peso hectolítrico, teor de água, tipos de sementes predominantes e integridade do endocarpo. Observou-se que: a) A máquina de pré-limpeza, a máquina de ventiladores e peneiras e a mesa densimétrica foram eficientes para a homogeneização do lote de sementes de café, proporcionando obtenção de melhor qualidade física na seqüência operacional em que foram utilizadas de forma conjugada; b) O uso de peneiras com crivos oblongos e crivos circulares, intercaladas na máquina de ventiladores e peneiras, possibilitou a separação de sementes mocas, de sementes com resíduos de exocarpo aderidos ao endocarpo e de sementes desprovidas de endocarpo, melhorando a aparência do lote; c) A mesa densimétrica foi o equipamento que proporcionou melhor separação de sementes com endocarpo danificado, bem como alterações favoráveis à qualidade física do lote; d) As sementes pequenas, retidas nas menores peneiras da máquina de ventiladores e peneiras, e as sementes de menor massa específica, classificadas ou não por tamanho e coletadas na descarga inferior da mesa densimétrica, foram as de baixa qualidade física.

Aggregates in the strength and gravity regime: Particles sizes in Saturn's rings

Particles in Saturn's main rings range in size from dust to kilometer-sized objects. Their size distribution is thought to be a result of competing accretion and fragmentation processes. While growth is naturally limited in tidal environments, frequent collisions among these objects may contribute to both accretion and fragmentation. As ring particles are primarily made of water ice attractive surface forces like adhesion could significantly influence these processes, finally determining the resulting size distribution. Here, we derive analytic expressions for the specific self-energy Q and related specific break-up energy Q(star) of aggregates. These expressions can be used for any aggregate type composed of monomeric constituents. We compare these expressions to numerical experiments where we create aggregates of various types including: regular packings like the face-centered cubic (fcc), Ballistic Particle Cluster Aggregates (BPCA), and modified BPCAs including e.g. different constituent size distributions. We show that accounting for attractive surface forces such as adhesion a simple approach is able to: (a) generally account for the size dependence of the specific break-up energy for fragmentation to occur reported in the literature, namely the division into "strength" and "gravity" regimes and (b) estimate the maximum aggregate size in a collisional ensemble to be on the order of a few tens of meters, consistent with the maximum particle size observed in Saturn's rings of about 10 m. (c) 2012 Elsevier B.V. All rights reserved.

5S rDNA characterization in twelve Sciaenidae fish species (Teleostei, Perciformes): depicting gene diversity and molecular markers

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Two 5S rDNA arrays in Neotropical fish species: is it a general rule for fishes ?

In this paper we describe Southern blot hybridization results probed with 5S rRNA genes for several Neotropical fish species representing different taxonomic groups. All the studied species showed a general trend with the 5S rDNA tandem repeats organized in two distinct size-classes. At the same time, data on 5S rDNA organization in fish genome were summarized. Previous information on the organization and evolution of 5S rRNA gene arrays in the genome of this vertebrate group are in agreement with the Southern results here presented. Sequences obtained for several fish species have revealed the occurrence of two distinct 5S rDNA classes characterized by distinct non-transcribed spacer sequences, which are clustered in different chromosomes in some species. Moreover, the 5S rDNA loci are generally distributed in an interstitial position in the chromosomes and they are usually not syntenic to the 45S rDNA. The presence of two classes of 5S rDNA in several non-related fish species suggests that this could be a common condition for the 5S rRNA gene organization in the fish genome.

Follicular diameter range based on morphological features in Synbranchus marmoratus (Bloch, 1795) (Teleostei, Synbranchiformes, Synbranchidae) from the South-central region of Brazil

The morphological characteristics of Synbranchus marmoratus female germ cells in various development stages were described in details; then measurements of ovarian follicle diameters were taken from primary and secondary growth as during these development stages the oocyte size varied considerably along the fish growth. The results were correlated to total fish length, using the individuals division in six size classes. It was possible to group oocytes by stages according to histological characteristics but not according to morphometric diameter, as there was a wide variation in diameter in each stage and overlap between different maturation stages. These data make available new information on the reproductive biology of Synbranchidae. (c) 2004 Published by Elsevier Ltd.

The reproductive cycle of Callinectes danae Smith, 1869 (Decapoda, Portunidae) in the Ubatuba Region, Brazil

Callinectes danae Smith, 1869, known as siri-azul, is an important fishery resource along the Brazilian coast. The reproductive cycle of this species was studied based on their moult cycle and the development of their gonads. The animals were collected with an otter-trawl in the Ubatuba region (23 degrees 26'S 45 degrees 02'W) every other month from July 1991 to May 1993. A total of 1826 specimens were captured: 788 males and 1038 females. Ovigerous females and specimens with developed gonads in both sexes were found in all months sampled. In females, moult activity was recorded in all size classes while in males, it was verified from 20-27 mm to 90-97 mm size classes. The females produced more than one clutch during a single reproductive season, a fact evidenced by the presence of ovigerous females with ovaries in all the development phases. The species C. danae reproduces continuously, like most brachyurans from tropical waters.

On the population biology of the mottled shore crab Pachygrapsus transversus (Gibbes, 1850) (Brachyura, Grapsidae) in a subtropical area

The mottled shore crab P. transversus is probably the most common brachyuran crab living in the marine rocky intertidal of southeastern Brazil. However, its biology is largely unknown. In this study, some aspects of the population biology of this species are investigated. Distribution of individuals in the intertidal range is heterogeneous. Sabellariid worm reefs and mytilid mussel beds can be considered as nursery grounds retaining most part of juveniles, while the rocky surface is mostly inhabited by adults, which find safety shelters in rock crevices. Annual size frequency distributions revealed clues of population stability and indicated that young individuals reach the adult habitat in a gradual process. Sex-ratio follows the 1:1 proportion in smaller size classes but is biased towards males in larger ones. Higher mortality in larger females is indicated as a possible cause of this pattern. Ovigerous ratio shows a remarkable seasonality in which highest percentages of ovigerous females occur during summer months, while recruitment of young is more intense from April to July, suggesting a very extensive larval development. Once established in the intertidal zone, young recruits will develop to mature individuals in late spring, when molting crabs become scarce and proportion of breeding females increases. Therefore, growth and reproduction are in a great part temporally separated, allowing an annual life cycle in which settlement, growth and breeding may take place within a I-yr period.

Population structure and breeding season of the South Atlantic hermit crab, Loxopagurus loxochelis (Anomura, Diogenidae) from the Ubatuba region, Brazil

A population of Loxopagurus loxochelis was studied in terms of seasonal abundance, size frequency distribution, sex ratio, and reproductive period (percentage of ovigerous females). Specimens were collected monthly over a period of two years (from September 1995 to August 1997) in the non-consolidated areas of the Ubatuba, Mar Virado, and Ubatumirim bays (northern coast of São Paulo State, Brazil) with a double-rig trawl net. A total of 1,084 individuals were analysed. Animal size (minimum, maximum, and mean +/- SD shield length) was 2.8, 9.1, and 6.88 +/- 1.13 mm for 625 males; 2.8, 8.2, and 5.78 +/- 0.98 mm for 236 non-ovigerous females; and 4.6, 8.0, and 6.24 +/- 0.68 mm for 223 ovigerous females, respectively. Sexual dimorphism was recorded by the presence of males in the largest size classes. The sex ratio was 1.4 : 1 in favour of males. The highest incidence of ovigerous females occurred during winter and spring (June to October), with a low percentage in summer and fall (November to May), indicating continuity in the reproductive cycle. This strategy of reproduction is related to temperature. The occurrence of L. loxochelis in the Ubatuba region represents the final point of northern distribution of this species as a function of water mass influence, and could be its real limit on the Atlantic coast of South America.

Reproductive biology of the rock shrimp Sicyonia dorsalis (Decapoda: Penaeoidea) from the southeastern coast of Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Population structure and reproductive period of whitebelly prawn Nematopalaemon schmitti (Holthuis 1950) (Decapoda: Caridea: Palaemonidae) on the southeastern coast of Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Viés Analítico em Estudos Tafonômicos com Macroinvertebrados: Implicações (Paleo)Ambientais e (Paleo)Ecológicas

A review of recent literature shows that most taphonomic studies of Holocene and fossil macrovertebrates are not methodologically standardized. Hence, results from distinct studies are not comparable, even among researches sharing virtually identical goals, targeting the same biological group of similar age and depositional environment. The effects of the shell size in the taphonomic analysis are still poorly understood. In order to study this issue, the taphonomic signatures (articulation, valve type, fragmentation, abrasion, corrosion, edge modification, color alteration, bioerosion and encrustation) of brachiopod shells (Bouchardia rosea (Mawe)), from Ubatuba Bay in the northern coast of São Paulo State, were investigated according to the sieve sizes. In the study area, 14 collecting stations were sampled via Van Veen grab sampler, along a bathymetric gradient, ranging from 0 to 35 m of depth. Bulk samples were sieved through 8 mm, 6 mm, and 2 mm mesh sizes, yielding a total of 5.204 shells. The results indicate that, when taphonomic signatures were independently analyzed per size classes (8 mm, 6 mm, and 2 mm), the taphonomic signatures are recorded in a complex and random way. Additionally, cluster analysis showed that the similarity among the clusters vary according to the considered sieve size. Thus, the sieve size plays an important role in the distribution of taphonomic signatures in shells of distinct sizes. These results suggest that the concentration of the taphonomic analysis on one class (e.g., the largest sieve size, 8 mm) is not always the best method. Rather, the total data (all sieves included) seems more accurate in recording the whole spectrum of taphonomic processes recorded in shells of a given assemblage.

Population features of the spider crab Acanthonyx scutiformis (Dana 1851) (Crustacea, Majoidea, Epialtidae) associated with rocky-shore algae from southeastern Brazil.

Acanthonyx scutiformis, an endemic species in the Brazilian coast, is commonly found in intertidal rocky-shore algal communities. This study analyzes the population biology of A. scutiformis from Ubatuba region. A total of 371 specimens were collected over one year. Size range was 4.2[long dash]12.7 mm CW (carapace width) for females and 3.7[long dash]15.8 mm CW for males. Females predominated in intermediate size classes, whereas males prevailed in the largest ones. The estimated size when 50% crabs were mature was 10.7 mm CW for males and 8.9 mm CW for females. Sex ratio varied among the demographic groups. The processes that influence A. scutiformis population structure can be related to the different times males and females reach sexual maturity and probably to the distinct predation pressures on each sex during the adult phase.

Bamboo overabundance alters forest structure and dynamics in the Atlantic Forest hotspot

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)