Reconstructing transcriptional regulatory networks using data integration and text mining

Transcriptional Regulatory Networks (TRNs) are powerful tool for representing several interactions that occur within a cell. Recent studies have provided information to help researchers in the tasks of building and understanding these networks. One of the major sources of information to build TRNs is biomedical literature. However, due to the rapidly increasing number of scientific papers, it is quite difficult to analyse the large amount of papers that have been published about this subject. This fact has heightened the importance of Biomedical Text Mining approaches in this task. Also, owing to the lack of adequate standards, as the number of databases increases, several inconsistencies concerning gene and protein names and identifiers are common. In this work, we developed an integrated approach for the reconstruction of TRNs that retrieve the relevant information from important biological databases and insert it into a unique repository, named KREN. Also, we applied text mining techniques over this integrated repository to build TRNs. However, was necessary to create a dictionary of names and synonyms associated with these entities and also develop an approach that retrieves all the abstracts from the related scientific papers stored on PubMed, in order to create a corpora of data about genes. Furthermore, these tasks were integrated into @Note, a software system that allows to use some methods from the Biomedical Text Mining field, including an algorithms for Named Entity Recognition (NER), extraction of all relevant terms from publication abstracts, extraction relationships between biological entities (genes, proteins and transcription factors). And finally, extended this tool to allow the reconstruction Transcriptional Regulatory Networks through using scientific literature.

Low f-number microlenses for integration on optical microsystems

This paper presents microlenses (MLs) with low f-number made of AZ4562 photoresist for integration on optical microsystems. The fabrication process was based on the thermal reflow and rehydration. Large series of MLs were fabricated with a width of 35 μm, a thickness of 5 μm, and spaced apart by 3 μm. The MLs were fabricated directly on the surface of a die with type n+/p-substrate junction photodiode fabricated in a standard CMOS process. The measured focal length was 49 μm with a tolerance of ±2 μm (maximum error of ±4%), resulting in a numerical aperture of 33.6 × 10-2 (±1.3 × 10-2). The measurements also revealed an f-number of 1.4.

Finite integration methods for isospectral flows

In this paper we consider the approximate computation of isospectral flows based on finite integration methods( FIM) with radial basis functions( RBF) interpolation,a new algorithm is developed. Our method ensures the symmetry of the solutions. Numerical experiments demonstrate that the solutions have higher accuracy by our algorithm than by the second order Runge- Kutta( RK2) method.

Integration methods in dynamic analysis

"Series title: Springerbriefs in applied sciences and technology, ISSN 2191-530X"

Efficient similarity-based operations for data integration

Similarity-based operations, similarity join, similarity grouping, data integration

Walking Tree - Organisation neuer Forschung in der Wissenschaft : Zusammenarbeit zwischen Integration und Differenzierung

Magdeburg, Univ., Fak. für Geistes-, Sozial- und Erziehungswiss., Diss., 2011

Stimulus-, aufgaben- und aufmerksamkeitsrelatierte Determinanten audiovisueller Integration

Magdeburg, Univ., Fak. für Naturwiss., Diss., 2011

Aufnahme von Flüchtlingen und Vertriebenen sowie Aspekte und Bestrebungen ihrer Eingliederung/Integration im Kreis Salzwedel 1945 bis 1948/49

Flight and displacement, Research about displaced people, Displaced people in Saxony- Anhalt and in the district of Salzwedel, Arrival and reception, Integration into social life, Administrative activities, Housing, Integration into the labour market, Social welfare activities

Integration of appetitive and aversive reinforcers and the neuromodulation of reward seeking and pain avoidance

Magdeburg, Univ., Fak. für Naturwiss., Diss., 2010

Zwischen Isolation, Anpassung und räumlicher Mobilität : eine Untersuchung zur Integration von Binnenwanderern in Deutschland

Magdeburg, Univ., Fak. für Geistes-, Sozial- und Erziehungswiss., Diss., 2011

Das Recht auf schulische Bildung für Kinder und Jugendliche mit ungeklärtem Asylstatus oder Duldung nach Rücknahme der Vorbehalte der UN-Kinderrechtskonvention : Eine Analyse für Kinder und Jugendliche, die in Begleitung Asyl in Deutschland suchen Bachelorarbeit

[s.c.]

Die schulische Förderung von Kindern und Jugendlichen mit einer Lernbehinderung: ein kindheitswissenschaftliches Praxisfeld?

[s.c.]

Minimal-invasive provenance integration into data-intensive systems

Magdeburg, Univ., Fak. für Informatik, Diss., 2014

Wege zur Integration von Intelligenten Messsystemen in eine ERP Branchenlösung für Energieversorger

[s.c.]