Ontology Development by Reuse

This chapter presents methodological guidelines that allow engineers to reuse generic ontologies. This kind of ontologies represents notions generic across many fields, (is part of, temporal interval, etc.). The guidelines helps the developer (a) to identify the type of generic ontology to be reused, (b) to find out the axioms and definitions that should be reused and (c) to adapt and integrate the generic ontology selected in the domain ontology to be developed. For each task of the methodology, a set of heuristics with examples are presented. We hope that after reading this chapter, you would have acquired some basic ideas on how to take advantage of the great deal of well-founded explicit knowledge that formalizes generic notions such as time concepts and the part of relation.

Towards a systematic benchmarking of ontology-based query rewriting systems

Query rewriting is one of the fundamental steps in ontologybased data access (OBDA) approaches. It takes as inputs an ontology and a query written according to that ontology, and produces as an output a set of queries that should be evaluated to account for the inferences that should be considered for that query and ontology. Different query rewriting systems give support to different ontology languages with varying expressiveness, and the rewritten queries obtained as an output do also vary in expressiveness. This heterogeneity has traditionally made it difficult to compare different approaches, and the area lacks in general commonly agreed benchmarks that could be used not only for such comparisons but also for improving OBDA support. In this paper we compile data, dimensions and measurements that have been used to evaluate some of the most recent systems, we analyse and characterise these assets, and provide a unified set of them that could be used as a starting point towards a more systematic benchmarking process for such systems. Finally, we apply this initial benchmark with some of the most relevant OBDA approaches in the state of the art.

kyrie2: query rewriting under extensional constraints in ELHIO

In this paper we study query answering and rewriting in ontologybased data access. Specifically, we present an algorithm for computing a perfect rewriting of unions of conjunctive queries posed over ontologies expressed in the description logic ELHIO, which covers the OWL 2 QL and OWL 2 EL profiles. The novelty of our algorithm is the use of a set of ABox dependencies, which are compiled into a so-called EBox, to limit the expansion of the rewriting. So far, EBoxes have only been used in query rewriting in the case of DL-Lite, which is less expressive than ELHIO. We have extensively evaluated our new query rewriting technique, and in this paper we discuss the tradeoff between the reduction of the size of the rewriting and the computational cost of our approach.

Workflow reuse in practice: a study of neuroimaging pipeline users

Workflow reuse is a major benefit of workflow systems and shared workflow repositories, but there are barely any studies that quantify the degree of reuse of workflows or the practical barriers that may stand in the way of successful reuse. In our own work, we hypothesize that defining workflow fragments improves reuse, since end-to-end workflows may be very specific and only partially reusable by others. This paper reports on a study of the current use of workflows and workflow fragments in labs that use the LONI Pipeline, a popular workflow system used mainly for neuroimaging research that enables users to define and reuse workflow fragments. We present an overview of the benefits of workflows and workflow fragments reported by users in informal discussions. We also report on a survey of researchers in a lab that has the LONI Pipeline installed, asking them about their experiences with reuse of workflow fragments and the actual benefits they perceive. This leads to quantifiable indicators of the reuse of workflows and workflow fragments in practice. Finally, we discuss barriers to further adoption of workflow fragments and workflow reuse that motivate further work.

Formalisation and experiences of R2RML-based SPARQL to SQL query translation using Morph

R2RML is used to specify transformations of data available in relational databases into materialised or virtual RDF datasets. SPARQL queries evaluated against virtual datasets are translated into SQL queries according to the R2RML mappings, so that they can be evaluated over the underlying relational database engines. In this paper we describe an extension of a well-known algorithm for SPARQL to SQL translation, originally formalised for RDBMS-backed triple stores, that takes into account R2RML mappings. We present the result of our implementation using queries from a synthetic benchmark and from three real use cases, and show that SPARQL queries can be in general evaluated as fast as the SQL queries that would have been generated by SQL experts if no R2RML mappings had been used.

Towards a Systematic benchmarking of ontology-based query rewriting systems

Query rewriting is one of the fundamental steps in ontologybased data access (OBDA) approaches. It takes as inputs an ontology and a query written according to that ontology, and produces as an output a set of queries that should be evaluated to account for the inferences that should be considered for that query and ontology. Different query rewriting systems give support to different ontology languages with varying expressiveness, and the rewritten queries obtained as an output do also vary in expressiveness. This heterogeneity has traditionally made it difficult to compare different approaches, and the area lacks in general commonly agreed benchmarks that could be used not only for such comparisons but also for improving OBDA support. In this paper we compile data, dimensions and measurements that have been used to evaluate some of the most recent systems, we analyse and characterise these assets, and provide a unified set of them that could be used as a starting point towards a more systematic benchmarking process for such systems. Finally, we apply this initial benchmark with some of the most relevant OBDA approaches in the state of the art.

Engineering optimisations in query rewriting for OBDA

Ontology-based data access (OBDA) systems use ontologies to provide views over relational databases. Most of these systems work with ontologies implemented in description logic families of reduced expressiveness, what allows applying efficient query rewriting techniques for query answering. In this paper we describe a set of optimisations that are applicable with one of the most expressive families used in this context (ELHIO¬). Our resulting system exhibits a behaviour that is comparable to the one shown by systems that handle less expressive logics.

Query Rewriting Optimisation Techniques for Ontology-Based Data Access

Ontology-Based Data Access (OBDA) permite el acceso a diferentes tipos de fuentes de datos (tradicionalmente bases de datos) usando un modelo más abstracto proporcionado por una ontología. La reescritura de consultas (query rewriting) usa una ontología para reescribir una consulta en una consulta reescrita que puede ser evaluada en la fuente de datos. Las consultas reescritas recuperan las respuestas que están implicadas por la combinación de los datos explicitamente almacenados en la fuente de datos, la consulta original y la ontología. Al trabajar sólo sobre las queries, la reescritura de consultas permite OBDA sobre cualquier fuente de datos que puede ser consultada, independientemente de las posibilidades para modificarla. Sin embargo, producir y evaluar las consultas reescritas son procesos costosos que suelen volverse más complejos conforme la expresividad y tamaño de la ontología y las consultas aumentan. En esta tesis exploramos distintas optimizaciones que peuden ser realizadas tanto en el proceso de reescritura como en las consultas reescritas para mejorar la aplicabilidad de OBDA en contextos realistas. Nuestra contribución técnica principal es un sistema de reescritura de consultas que implementa las optimizaciones presentadas en esta tesis. Estas optimizaciones son las contribuciones principales de la tesis y se pueden agrupar en tres grupos diferentes: -optimizaciones que se pueden aplicar al considerar los predicados en la ontología que no están realmente mapeados con las fuentes de datos. -optimizaciones en ingeniería que se pueden aplicar al manejar el proceso de reescritura de consultas en una forma que permite reducir la carga computacional del proceso de generación de consultas reescritas. -optimizaciones que se pueden aplicar al considerar metainformación adicional acerca de las características de la ABox. En esta tesis proporcionamos demostraciones formales acerca de la corrección y completitud de las optimizaciones propuestas, y una evaluación empírica acerca del impacto de estas optimizaciones. Como contribución adicional, parte de este enfoque empírico, proponemos un banco de pruebas (benchmark) para la evaluación de los sistemas de reescritura de consultas. Adicionalmente, proporcionamos algunas directrices para la creación y expansión de esta clase de bancos de pruebas. ABSTRACT Ontology-Based Data Access (OBDA) allows accessing different kinds of data sources (traditionally databases) using a more abstract model provided by an ontology. Query rewriting uses such ontology to rewrite a query into a rewritten query that can be evaluated on the data source. The rewritten queries retrieve the answers that are entailed by the combination of the data explicitly stored in the data source, the original query and the ontology. However, producing and evaluating the rewritten queries are both costly processes that become generally more complex as the expressiveness and size of the ontology and queries increase. In this thesis we explore several optimisations that can be performed both in the rewriting process and in the rewritten queries to improve the applicability of OBDA in real contexts. Our main technical contribution is a query rewriting system that implements the optimisations presented in this thesis. These optimisations are the core contributions of the thesis and can be grouped into three different groups: -optimisations that can be applied when considering the predicates in the ontology that are actually mapped to the data sources. -engineering optimisations that can be applied by handling the process of query rewriting in a way that permits to reduce the computational load of the query generation process. -optimisations that can be applied when considering additional metainformation about the characteristics of the ABox. In this thesis we provide formal proofs for the correctness of the proposed optimisations, and an empirical evaluation about the impact of the optimisations. As an additional contribution, part of this empirical approach, we propose a benchmark for the evaluation of query rewriting systems. We also provide some guidelines for the creation and expansion of this kind of benchmarks.

Objetos tenaces : adaptive reuse en Meatpacking, 1970–1985

OBJETOS TENACES versa sobre la práctica del adaptive reuse (la “reutilización adaptativa”, la reconversión) explicado a través del fenómeno de ruptura, suspensión y reconfiguración de vínculos que el objeto arquitectónico tiene con respecto a su medio económico, sociocultural, normativo y de utilitas. Se trata de un fenómeno en tres fases, muy próximo al mecanismo empleado por el readymade y por el display, que en arquitectura parte de la crisis que supone un cambio de circunstancias, un desarraigo del objeto respecto de su ámbito anterior. El mecanismo tiene vocación de intervención mínima, desde un posicionamiento actual que comprende el mundo construido como una realidad “ya hecha”, y donde las operaciones de proyecto son acciones de transformación que llevan de una situación de obsolescencia a otra de vigencia renovada, es decir, de una realidad completa a otra igualmente completa. Para ello, la investigación se sirve de tres ejemplos de un mismo entorno geográfico (el área en torno a Meatpacking, en el lado oeste del bajo Manhattan, Nueva York) y temporal (las últimas décadas del siglo XX, en las que los casos se solapan a pesar de tener desarrollos cronológicos diversos). Bell Telephone Laboratories, The West Side Improvement y The National Biscuit Company, reconvertidos a Westbeth, a The High Line y a Chelsea Market, construyen juntos el argumento por suma de conceptos, por adición de fenómenos, estudiando las cualidades y las circunstancias que hacen posible la continuidad de las estructuras, es decir, su supervivencia. El texto forma un corpus que proporciona algunas de las claves del objeto denominado como tenaz a través del análisis sincrónico del antes y el después de su puesta en crisis. A tal efecto, se exponen una serie de figuras razonadas entre las cuales figuran el lijado del barniz, los hilos compartidos, la máscara, la momificación y la vitrina, el puente sobre le desfiladero, el enfriamiento, o las reliquias, incrustaciones y adherencias, todas ellas encaminadas a explicar el proceso de renovación del artefacto como un cambio en el sentido, en el significado, y no tanto en lo material. Entre las consideraciones de la tesis está, por un lado, el carácter relativo del término tenacidad, concepto que define a los objetos que se encuentran y se reconocen en su idoneidad, que tienen capacidad de adaptación, y que precisan finalmente de grandes dosis de pragmatismo para su reconfiguración, siendo todas éstas condiciones necesarias pero sólo suficientes a posteriori. Por otro lado, el texto reflexiona acerca del intangible que comparten todos los objetos así llamados y que consiste en la condición, quizá formidable, de ser reconocibles por parte de los sucesivos intervinientes de su historia, convencidos de que su renovación supone una oportunidad; su desaparición, una pérdida. Finalmente, la investigación apunta hacia el concepto de anacronismo como justificación para los objetos que se demuestran adaptables a épocas sucesivas, y que encajan en el tiempo de forma compleja. ABSTRACT TENACIOUS OBJECTS deals with the practice of the adaptive reuse explained by means of the phenomenon of rupture, suspension and reconfiguration of links that the architectural object has vis-à-vis its economic, socio-cultural and regulatory environment, and its utilitas. It is a phenomenon structured in three stages, very close to the mechanism used by the readymade and by the display, which in architecture arise from the crisis that leads to a change in circumstances, an alienation of the object regarding its previous environment. The mechanism aims to the minimum intervention, from a current positioning which understands the world built as a reality “already made”, and where the operations of the project are transformative actions that take us from a situation of obsolescence to a situation of renewed validity, that is, from a complete reality to one just as complete. For this purpose, the research makes use of three examples in the same geographical area (the Meatpacking Discrict, in the Lower West Side of Manhattan, New York) and the same period (the last decades of the 20th century, in which the cases overlap in spite of their diverse chronological developments). Bell Telephone Laboratories, The West Side Improvement and The National Biscuit Company, reconverted into Westbeth, The High Line and Chelsea Market, make up, together, the argument as a sum of concepts, and addition of phenomena, studying the qualities and circumstances which make the continuity of the structures possible, that is, their survival. The text forms a corpus that provides some of the keys of the so-called tenacious object by means of the synchronic analysis of before and after its crisis. To this end, a series of reasoned figures is presented, including the sanding of varnish, the shared threads, the mask, the mummification and the display cabinet, the bridge over the gorge, cooling, or the relics, incrustations and adherences, all of them aimed at explaining the renovation process of the artifact as a change in the sense and the meaning, rather than the material. The considerations of this dissertation include, on the one hand, the relative nature of the term tenacity, a concept which defines the objects found and recognized in their suitability, that are capable of adapting and which finally require large doses of pragmatism for their reconfiguration, all these conditions being necessary but only sufficient a posteriori. On the other hand, the text reflects on the intangible shared among all the so-called objects, and which consists of the condition, perhaps extraordinary, of being recognized by the subsequent interveners of their history, convinced that their renovation represents an opportunity; their disappearance, a loss. Finally, the dissertation studies the concept of anachronism as a justification for the objects that prove to adapt to subsequent periods, and which fit in time in a complex manner.

An Empirical Comparison of Reuse in Embedded and Nonembedded Systems

High-quality software, delivered on time and budget, constitutes a critical part of most products and services in modern society. Our government has invested billions of dollars to develop software assets, often to redevelop the same capability many times. Recognizing the waste involved in redeveloping these assets, in 1992 the Department of Defense issued the Software Reuse Initiative. The vision of the Software Reuse Initiative was "To drive the DoD software community from its current "re-invent the software" cycle to a process-driven, domain-specific, architecture-centric, library-based way of constructing software.'' Twenty years after issuing this initiative, there is evidence of this vision beginning to be realized in nonembedded systems. However, virtually every large embedded system undertaken has incurred large cost and schedule overruns. Investigations into the root cause of these overruns implicates reuse. Why are we seeing improvements in the outcomes of these large scale nonembedded systems and worse outcomes in embedded systems? This question is the foundation for this research. The experiences of the Aerospace industry have led to a number of questions about reuse and how the industry is employing reuse in embedded systems. For example, does reuse in embedded systems yield the same outcomes as in nonembedded systems? Are the outcomes positive? If the outcomes are different, it may indicate that embedded systems should not use data from nonembedded systems for estimation. Are embedded systems using the same development approaches as nonembedded systems? Does the development approach make a difference? If embedded systems develop software differently from nonembedded systems, it may mean that the same processes do not apply to both types of systems. What about the reuse of different artifacts? Perhaps there are certain artifacts that, when reused, contribute more or are more difficult to use in embedded systems. Finally, what are the success factors and obstacles to reuse? Are they the same in embedded systems as in nonembedded systems? The research in this dissertation is comprised of a series of empirical studies using professionals in the aerospace and defense industry as its subjects. The main focus has been to investigate the reuse practices of embedded systems professionals and nonembedded systems professionals and compare the methods and artifacts used against the outcomes. The research has followed a combined qualitative and quantitative design approach. The qualitative data were collected by surveying software and systems engineers, interviewing senior developers, and reading numerous documents and other studies. Quantitative data were derived from converting survey and interview respondents' answers into coding that could be counted and measured. From the search of existing empirical literature, we learned that reuse in embedded systems are in fact significantly different from nonembedded systems, particularly in effort in model based development approach and quality where the development approach was not specified. The questionnaire showed differences in the development approach used in embedded projects from nonembedded projects, in particular, embedded systems were significantly more likely to use a heritage/legacy development approach. There was also a difference in the artifacts used, with embedded systems more likely to reuse hardware, test products, and test clusters. Nearly all the projects reported using code, but the questionnaire showed that the reuse of code brought mixed results. One of the differences expressed by the respondents to the questionnaire was the difficulty in reuse of code for embedded systems when the platform changed. The semistructured interviews were performed to tell us why the phenomena in the review of literature and the questionnaire were observed. We asked respected industry professionals, such as senior fellows, fellows and distinguished members of technical staff, about their experiences with reuse. We learned that many embedded systems used heritage/legacy development approaches because their systems had been around for many years, before models and modeling tools became available. We learned that reuse of code is beneficial primarily when the code does not require modification, but, especially in embedded systems, once it has to be changed, reuse of code yields few benefits. Finally, while platform independence is a goal for many in nonembedded systems, it is certainly not a goal for the embedded systems professionals and in many cases it is a detriment. However, both embedded and nonembedded systems professionals endorsed the idea of platform standardization. Finally, we conclude that while reuse in embedded systems and nonembedded systems is different today, they are converging. As heritage embedded systems are phased out, models become more robust and platforms are standardized, reuse in embedded systems will become more like nonembedded systems.

How to make a natural language interface to query databases accessible to everyone: An example

Natural Language Interfaces to Query Databases (NLIDBs) have been an active research field since the 1960s. However, they have not been widely adopted. This article explores some of the biggest challenges and approaches for building NLIDBs and proposes techniques to reduce implementation and adoption costs. The article describes {AskMe*}, a new system that leverages some of these approaches and adds an innovative feature: query-authoring services, which lower the entry barrier for end users. Advantages of these approaches are proven with experimentation. Results confirm that, even when {AskMe*} is automatically reconfigurable against multiple domains, its accuracy is comparable to domain-specific NLIDBs.

How can directories of open access repositories improve the reuse of learning objects in building engineering?

This paper studies the use of directories of open access repositories worldwide (DOARW) to search Spanish repositories containing learning objects in the field of building engineering (BE). Results show that DOARW are powerful tools, but deficiencies (indicated in this study) have to be solved in order to obtain more accurate searches, and to facilitate repository-finding for potential users who are seeking learning objects (LOs) for reuse. Aiming to contribute to the promotion of the reuse of Spanish LOs, this study exposes to the academic community all existing Spanish repositories with LOs, and in particular, the repositories that contain LOs in the field of BE. This paper also studies the critical mass of available content (LOs) in the field of BE in Spain. It has been found to be low.

Building from building waste: The development of an instrument to determine the circularity of materials from the existing building stock in order to maximise high quality reuse

On a global level the population growth and increase of the middle class lead to a growing demand on material resources. The built environment has an enormous impact on this scarcity. In addition, a surplus of construction and demolition waste is a common problem. The construction industry claims to recycle 95% of this waste but this is in fact mainly downcycling. Towards the circular economy, the quality of reuse becomes of increasing importance. Buildings are material warehouses that can contribute to this high quality reuse. However, several aspects to achieve this are unknown and a need for more insight into the potential for high quality reuse of building materials exists. Therefore an instrument has been developed that determines the circularity of construction waste in order to maximise high quality reuse. The instrument is based on three principles: ‘product and material flows in the end of life phase’, ‘future value of secondary materials and products’ and ‘the success of repetition in a new life cycle’. These principles are further divided into a number of criteria to which values and weighting factors are assigned. A degree of circularity can then be determined as a percentage. A case study for a typical 70s building is carried out. For concrete, the circularity is increased from 25% to 50% by mapping out the potential for high quality reuse. During the development of the instrument it was clarified that some criteria are difficult to measure. Accurate and reliable data are limited and assumptions had to be made. To increase the reliability of the instrument, experts have reviewed the instrument several times. In the long-term, the instrument can be used as a tool for quantitative research to reduce the amount of construction and demolition waste and contribute to the reduction of raw material scarcity.

Reuse of Spanish civil war air-raid shelters in Alicante: the R46 Balmis and R31 Seneca shelter

More than a hundred public air-raid shelters were constructed beneath Alicante during the Spanish Civil war. Their architectural uniqueness and humanitarian purpose render these shelters a tangible testament to our recent history. The Alicante Municipal Archives hold reports written by technicians who inspected the shelters in the 1940s, which were subsequently included in the Special Plan for public shelters in 1953. Half a century later, in 2003, information on the air-raid shelters was included in another Special Plan aimed at protecting Alicante’s archaeological heritage. Thanks to the work of the Municipal Heritage Conservation unit (COPHIAM) and the Special Protection Plan for Urban Archaeology (PEPA), the exact or approximate locations were identified for almost 90% of the shelters known to have existed. This paper describes interventions in two of these architectural spaces using advanced museology techniques. The first concerns air-raid shelter R46, located in the Plaza del Dr. Balmis in the city centre. This was built in 1938, and is rectangular with two entrances. The second is air-raid shelter R31, located in the Plaza Séneca.

Naval Air Station South Weymouth reuse study: Rockland land use

Shows land use in the part of Rockland adjoining South Weymouth Naval Air Station.