In Situ Near-Infrared (NIR) Versus High-Throughput Mid- Infrared (MIR) Spectroscopy to Monitor Biopharmaceutical Production

The development of biopharmaceutical manufacturing processes presents critical constraints, with the major constraint being that living cells synthesize these molecules, presenting inherent behavior variability due to their high sensitivity to small fluctuations in the cultivation environment. To speed up the development process and to control this critical manufacturing step, it is relevant to develop high-throughput and in situ monitoring techniques, respectively. Here, high-throughput mid-infrared (MIR) spectral analysis of dehydrated cell pellets and in situ near-infrared (NIR) spectral analysis of the whole culture broth were compared to monitor plasmid production in recombinant Escherichia coil cultures. Good partial least squares (PLS) regression models were built, either based on MIR or NIR spectral data, yielding high coefficients of determination (R-2) and low predictive errors (root mean square error, or RMSE) to estimate host cell growth, plasmid production, carbon source consumption (glucose and glycerol), and by-product acetate production and consumption. The predictive errors for biomass, plasmid, glucose, glycerol, and acetate based on MIR data were 0.7 g/L, 9 mg/L, 0.3 g/L, 0.4 g/L, and 0.4 g/L, respectively, whereas for NIR data the predictive errors obtained were 0.4 g/L, 8 mg/L, 0.3 g/L, 0.2 g/L, and 0.4 g/L, respectively. The models obtained are robust as they are valid for cultivations conducted with different media compositions and with different cultivation strategies (batch and fed-batch). Besides being conducted in situ with a sterilized fiber optic probe, NIR spectroscopy allows building PLS models for estimating plasmid, glucose, and acetate that are as accurate as those obtained from the high-throughput MIR setup, and better models for estimating biomass and glycerol, yielding a decrease in 57 and 50% of the RMSE, respectively, compared to the MIR setup. However, MIR spectroscopy could be a valid alternative in the case of optimization protocols, due to possible space constraints or high costs associated with the use of multi-fiber optic probes for multi-bioreactors. In this case, MIR could be conducted in a high-throughput manner, analyzing hundreds of culture samples in a rapid and automatic mode.

In situ NIR spectroscopy monitoring of plasmid production processes effect of producing strain, medium composition and the cultivation strategy

BACKGROUNDWhile the pharmaceutical industry keeps an eye on plasmid DNA production for new generation gene therapies, real-time monitoring techniques for plasmid bioproduction are as yet unavailable. This work shows the possibility of in situ monitoring of plasmid production in Escherichia coli cultures using a near infrared (NIR) fiber optic probe. RESULTSPartial least squares (PLS) regression models based on the NIR spectra were developed for predicting bioprocess critical variables such as the concentrations of biomass, plasmid, carbon sources (glucose and glycerol) and acetate. In order to achieve robust models able to predict the performance of plasmid production processes, independently of the composition of the cultivation medium, cultivation strategy (batch versus fed-batch) and E. coli strain used, three strategies were adopted, using: (i) E. coliDH5 cultures conducted under different media compositions and culture strategies (batch and fed-batch); (ii) engineered E. coli strains, MG1655endArecApgi and MG1655endArecA, grown on the same medium and culture strategy; (iii) diverse E. coli strains, over batch and fed-batch cultivations and using different media compositions. PLS models showed high accuracy for predicting all variables in the three groups of cultures. CONCLUSIONNIR spectroscopy combined with PLS modeling provides a fast, inexpensive and contamination-free technique to accurately monitoring plasmid bioprocesses in real time, independently of the medium composition, cultivation strategy and the E. coli strain used.

Monitoring the ex-vivo expansion of human mesenchymal stem/stromal cells in xeno-free microcarrier-based reactor systems by MIR spectroscopy

Human mesenchymal stem/stromal cells (MSCs) have received considerable attention in the field of cell-based therapies due to their high differentiation potential and ability to modulate immune responses. However, since these cells can only be isolated in very low quantities, successful realization of these therapies requires MSCs ex-vivo expansion to achieve relevant cell doses. The metabolic activity is one of the parameters often monitored during MSCs cultivation by using expensive multi-analytical methods, some of them time-consuming. The present work evaluates the use of mid-infrared (MIR) spectroscopy, through rapid and economic high-throughput analyses associated to multivariate data analysis, to monitor three different MSCs cultivation runs conducted in spinner flasks, under xeno-free culture conditions, which differ in the type of microcarriers used and the culture feeding strategy applied. After evaluating diverse spectral preprocessing techniques, the optimized partial least square (PLS) regression models based on the MIR spectra to estimate the glucose, lactate and ammonia concentrations yielded high coefficients of determination (R2 ≥ 0.98, ≥0.98, and ≥0.94, respectively) and low prediction errors (RMSECV ≤ 4.7%, ≤4.4% and ≤5.7%, respectively). Besides PLS models valid for specific expansion protocols, a robust model simultaneously valid for the three processes was also built for predicting glucose, lactate and ammonia, yielding a R2 of 0.95, 0.97 and 0.86, and a RMSECV of 0.33, 0.57, and 0.09 mM, respectively. Therefore, MIR spectroscopy combined with multivariate data analysis represents a promising tool for both optimization and control of MSCs expansion processes.

Comparative analysis of near and mid-infrared spectroscopy to monitor recombinant cyprosin production

Infrared spectroscopy, either in the near and mid (NIR/MIR) region of the spectra, has gained great acceptance in the industry for bioprocess monitoring according to Process Analytical Technology, due to its rapid, economic, high sensitivity mode of application and versatility. Due to the relevance of cyprosin (mostly for dairy industry), and as NIR and MIR spectroscopy presents specific characteristics that ultimately may complement each other, in the present work these techniques were compared to monitor and characterize by in situ and by at-line high-throughput analysis, respectively, recombinant cyprosin production by Saccharomyces cerevisiae. Partial least-square regression models, relating NIR and MIR-spectral features with biomass, cyprosin activity, specific activity, glucose, galactose, ethanol and acetate concentration were developed, all presenting, in general, high regression coefficients and low prediction errors. In the case of biomass and glucose slight better models were achieved by in situ NIR spectroscopic analysis, while for cyprosin activity and specific activity slight better models were achieved by at-line MIR spectroscopic analysis. Therefore both techniques enabled to monitor the highly dynamic cyprosin production bioprocess, promoting by this way more efficient platforms for the bioprocess optimization and control.

Measurement of lead concentration in biological tissues by atomic spectroscopy techniques

Dissertation for the degree of Doctor of Philosophy in Physics

Photoelectron spectroscopy of nitrogen containing molecules of biological and industrial interest

A thesis submitted for the degree of Ph. D. in Physics

Ligand K-edge X-ray absorption spectroscopy and DFT calculations on [Fe3S4]0,+ clusters: delocalization, redox, and effect of the protein environment

Ligand K-edge XAS of an [Fe3S4]0 model complex is reported. The pre-edge can be resolved into contributions from the í2Ssulfide, í3Ssulfide, and Sthiolate ligands. The average ligand-metal bond covalencies obtained from these pre-edges are further distributed between Fe3+ and Fe2.5+ components using DFT calculations. The bridging ligand covalency in the [Fe2S2]+ subsite of the [Fe3S4]0 cluster is found to be significantly lower than its value in a reduced [Fe2S2] cluster (38% vs 61%, respectively). This lowered bridging ligand covalency reduces the superexchange coupling parameter J relative to its value in a reduced [Fe2S2]+ site (-146 cm-1 vs -360 cm-1, respectively). This decrease in J, along with estimates of the double exchange parameter B and vibronic coupling parameter ì2/k-, leads to an S ) 2 delocalized ground state in the [Fe3S4]0 cluster. The S K-edge XAS of the protein ferredoxin II (Fd II) from the D. gigas active site shows a decrease in covalency compared to the model complex, in the same oxidation state, which correlates with the number of H-bonding interactions to specific sulfur ligands present in the active site. The changes in ligand-metal bond covalencies upon redox compared with DFT calculations indicate that the redox reaction involves a two-electron change (one-electron ionization plus a spin change of a second electron) with significant electronic relaxation. The presence of the redox inactive Fe3+ center is found to decrease the barrier of the redox process in the [Fe3S4] cluster due to its strong antiferromagnetic coupling with the redox active Fe2S2 subsite.

Scanning electron microscopy and X-ray spectroscopy applied to mycelial phase of sporothrix schenckii

Scanning electron microscopy applied to the mycelial phase of Sporothrix schenckii shows a matted mycelium with conidia of a regular pattern. X-Ray microanalysis applied in energy dispersive spectroscopy and also in wavelength dispersive spectroscopy reveals the presence of several elements of Mendeleef's classification.

Study and characterization of the ZnPc:C60/MoOx interface in organic solar cells by means of photoelectron spectroscopy

Dissertation to obtain the academic degree of Master in materials engineering submitted to the Faculty of science and engineering of Universidade Nova de Lisboa

Molecular characterization of the fibrinogen-erythrocyte interaction and its influence on cardiovascular pathologies by AFM-based force spectroscopy

Dissertação para obtenção do Grau de Mestre em Engenharia Biomédica

Monitoring and modelling of membrane bioreactors for wastewater treatment incorporating 2D fluorescence spectroscopy

Dissertação para obtenção do Grau de Doutor em Engenharia Química e Bioquímica, Especialidade em Engenharia Bioquímica

Proton magnetic resonance spectroscopy of the frontal lobe in schizophrenics: a critical review of the methodology

Schizophrenic patients undergoing proton magnetic resonance spectroscopy show alterations in N-acetyl aspartate levels in several brain regions, indicating neuronal dysfunction. The present review focuses on the main proton magnetic resonance spectroscopy studies in the frontal lobe of schizophrenics. A MEDLINE search, from 1991 to March 2004, was carried out using the key-words spectroscopy and schizophrenia and proton and frontal. In addition, articles cited in the reference list of the studies obtained through MEDLINE were included. As a result, 27 articles were selected. The results were inconsistent, 19 papers reporting changes in the N-acetyl aspartate levels, while 8 reported no change. Methodological analysis led to the conclusion that the discrepancy may be due the following factors: (i) number of participants; (ii) variation in the clinical and demographic characteristics of the groups; (iii) little standardization of the acquisition parameters of spectroscopy. Overall, studies that fulfill strict methodological criteria show N-acetyl aspartate decrease in the frontal lobe of male schizophrenics.

Influência da cobertura e do sombreamento do canteiro na germinação e desenvolvimento inicial de Plântulas de Pau Rosa (Aniba rosaeodora)

Um experimento foi instalado no viveiro da Reserva Florestal Adolfo Ducke, Manaus, Amazonas, Brasil, com o objetivo de comparar três tipos de cobertura de canteiros empregados em viveiros florestais e testar quatro níveis de sombreamento na germinação, emergência e desenvolvimento de plântulas de pau rosa (Aniba rosaeodora Ducke). Na cobertura dos canteiros utilizou-se palha de arroz, serragem e vermiculita. Os níveis de sombreamento de 30, 50 e 70% foram obtidos por meio de telas de poliolefinas de cor preta, sendo o de 0% obtido por semeadura a pleno sol. O delineamento estatístico foi de parcelas subdivididas em blocos ao acaso. Os tipos de cobertura utilizados e a interação entre os níveis de sombreamento e tipo de cobertura de canteiros não influenciaram na germinação das sementes e no índice de velocidade de emergência. Os níveis de sombreamento não influenciaram na germinação das sementes, mas apresentaram efeito significativo no índice de velocidade de emergência. Os tipos de cobertura dos canteiros não influenciaram no desenvolvimento das plântulas em altura, diâmetro à altura do colo e peso da matéria seca da parte aérea, do sistema radicular e total; a área foliar das plântulas obtidas com a cobertura de vermiculita foi melhor que com serragem. Melhores resultados de crescimento em altura e peso da matéria seca da parte aérea, do sistema radicular e total, foram observados nas plântulas cultivadas sob os níveis de 30 e 50% de sombreamento. As interações de 30% de sombreamento com a cobertura de vermiculita c 50% de sombreamento com a cobertura de palha de arroz proporcionaram maiores valores de crescimento em altura e peso da matéria seca total das plântulas de pau rosa, respectivamente.

Crescimento de mudas de pupunheira (Bactris gasipaes) transplantadas em diferentes estádios de plântula, substratos e volume de substrato

A Comissão Estadual de Sementes e Mudas do Estado do Amazonas estabeleceu normas e padrões para a produção de mudas fiscalizadas, mas esses padrões ainda são vagos para a pupunheira (Bactris gasipaes Kunth, Palmae). Visando melhorar esse padrão avaliou-se o desenvolvimento de mudas transplantadas em diferentes estádios de plântula (chifrinhos, uma folha e duas folhas), substrato (sem e com estéreo de galinha: 3: 1 v: v de solo superficial: estéreo) e volume de substrato (0,5, 1 e 2 kg), em Manaus, AM. Foram utilizadas sementes de plantas inermes de Yurimaguas, Peru, colhidas em março de 1997. Adotou-se o delineamento de blocos casualizados, em esquema fatorial 2x3x3, com quatro repetições. As plântulas em substrato com estéreo tiveram maior crescimento em altura (19 cm) em relação às sem estéreo (8 cm) aos 6 meses, e as plântulas transplantadas no estádio de uma folha tiveram maior crescimento (15 cm), seguida de chifrinho (14 cm) e de duas folhas (12 cm). Os sacos com capacidade para 1 kg e 2 kg não diferiram no crescimento das plantas (altura 14,5 e 15,0 cm, respectivamente), superando o de 0,5 kg (11 cm). Portanto, para a produção de mudas de boa qualidade, as plântulas de pupunheira devem ser transplantadas no estádio de uma folha aberta, em sacos de um kg contendo substrato com estéreo.

Sementes e plântulas de andiroba (Carapa guianensis Aubl. e Carapa procera D. C.): aspectos botânicos, ecológicos e tecnológicos

Na Amazônia, encontram-se ambas espécies do gênero Carapa (Meliaceae), conhecidas pela qualidade da madeira e pelo óleo extraído das sementes. O objetivo deste trabalho foi apresentar informações sobre sementes e plântulas de uma maneira abrangente para subsidiar interesses científicos e aplicados à propagação e manejo das espécies. Para tanto são apresentadas a bio-morfologia dos frutos, sementes e plântulas e uma descrição botânica comparativa, permitindo a distinção das duas espécies. A distribuição natural, abundância e fenologia são apresentados; como também fatores que afetam a regeneração natural, relacionados com as altas taxas de predação de sementes e o ataque da broca-do-ponteiro (Hypsipyla grandella). Andiroba produz sementes grandes e regularmente (em média com peso de 25 g - C. guianensis el6 g -C. procera), porém a produção de mudas enfrenta dificuldades devido a intolerância das sementes ao dessecamento e resfriamento. A espessura do tegumento das sementes de C. guianensis pode causar dormência e prolongar a germinação em até seis meses. O tegumento das sementes de C. procera é normalmente mais delgado e elas necessitam em média apenas um mês para germinar. Práticas de viveiro e plantio, assim como o uso destas espécies são abordados.