Dynamic variability in adaptive systems

One of the reasons for using variability in the software product line (SPL) approach (see Apel et al., 2006; Figueiredo et al., 2008; Kastner et al., 2007; Mezini & Ostermann, 2004) is to delay a design decision (Svahnberg et al., 2005). Instead of deciding on what system to develop in advance, with the SPL approach a set of components and a reference architecture are specified and implemented (during domain engineering, see Czarnecki & Eisenecker, 2000) out of which individual systems are composed at a later stage (during application engineering, see Czarnecki & Eisenecker, 2000). By postponing the design decisions in such a manner, it is possible to better fit the resultant system in its intended environment, for instance, to allow selection of the system interaction mode to be made after the customers have purchased particular hardware, such as a PDA vs. a laptop. Such variability is expressed through variation points which are locations in a software-based system where choices are available for defining a specific instance of a system (Svahnberg et al., 2005). Until recently it had sufficed to postpone committing to a specific system instance till before the system runtime. However, in the recent years the use and expectations of software systems in human society has undergone significant changes.Today's software systems need to be always available, highly interactive, and able to continuously adapt according to the varying environment conditions, user characteristics and characteristics of other systems that interact with them. Such systems, called adaptive systems, are expected to be long-lived and able to undertake adaptations with little or no human intervention (Cheng et al., 2009). Therefore, the variability now needs to be present also at system runtime, which leads to the emergence of a new type of system: adaptive systems with dynamic variability.

EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data

Background: Understanding transcriptional regulation by genome-wide microarray studies can contribute to unravel complex relationships between genes. Attempts to standardize the annotation of microarray data include the Minimum Information About a Microarray Experiment (MIAME) recommendations, the MAGE-ML format for data interchange, and the use of controlled vocabularies or ontologies. The existing software systems for microarray data analysis implement the mentioned standards only partially and are often hard to use and extend. Integration of genomic annotation data and other sources of external knowledge using open standards is therefore a key requirement for future integrated analysis systems. Results: The EMMA 2 software has been designed to resolve shortcomings with respect to full MAGE-ML and ontology support and makes use of modern data integration techniques. We present a software system that features comprehensive data analysis functions for spotted arrays, and for the most common synthesized oligo arrays such as Agilent, Affymetrix and NimbleGen. The system is based on the full MAGE object model. Analysis functionality is based on R and Bioconductor packages and can make use of a compute cluster for distributed services. Conclusion: Our model-driven approach for automatically implementing a full MAGE object model provides high flexibility and compatibility. Data integration via SOAP-based web-services is advantageous in a distributed client-server environment as the collaborative analysis of microarray data is gaining more and more relevance in international research consortia. The adequacy of the EMMA 2 software design and implementation has been proven by its application in many distributed functional genomics projects. Its scalability makes the current architecture suited for extensions towards future transcriptomics methods based on high-throughput sequencing approaches which have much higher computational requirements than microarrays.

Towards Distributed Model Transformations with LinTra

Performance and scalability of model transformations are becoming prominent topics in Model-Driven Engineering. In previous works we introduced LinTra, a platform for executing model transformations in parallel. LinTra is based on the Linda model of a coordination language and is intended to be used as a middleware where high-level model transformation languages are compiled. In this paper we present the initial results of our analyses on the scalability of out-place model-to-model transformation executions in LinTra when the models and the processing elements are distributed over a set of machines.

Towards flexible parsing of structured textual model representations

Existing parsers for textual model representation formats such as XMI and HUTN are unforgiving and fail upon even the smallest inconsistency between the structure and naming of metamodel elements and the contents of serialised models. In this paper, we demonstrate how a fuzzy parsing approach can transparently and automatically resolve a number of these inconsistencies, and how it can eventually turn XML into a human-readable and editable textual model representation format for particular classes of models.

Integration of a graph-based model indexer in commercial modelling tools

Softeam has over 20 years of experience providing UML-based modelling solutions, such as its Modelio modelling tool, and its Constellation enterprise model management and collaboration environment. Due to the increasing number and size of the models used by Softeam’s clients, Softeam joined the MONDO FP7 EU research project, which worked on solutions for these scalability challenges and produced the Hawk model indexer among other results. This paper presents the technical details and several case studies on the integration of Hawk into Softeam’s toolset. The first case study measured the performance of Hawk’s Modelio support using varying amounts of memory for the Neo4j backend. In another case study, Hawk was integrated into Constellation to provide scalable global querying of model repositories. Finally, the combination of Hawk and the Epsilon Generation Language was compared against Modelio for document generation: for the largest model, Hawk was two orders of magnitude faster.

Stress-testing centralised model stores

One of the current challenges in model-driven engineering is enabling effective collaborative modelling. Two common approaches are either storing the models in a central repository, or keeping them under a traditional file-based version control system and build a centralized index for model-wide queries. Either way, special attention must be paid to the nature of these repositories and indexes as networked services: they should remain responsive even with an increasing number of concurrent clients. This paper presents an empirical study on the impact of certain key decisions on the scalability of concurrent model queries, using an Eclipse Connected Data Objects model repository and a Hawk model index. The study evaluates the impact of the network protocol, the API design and the internal caching mechanisms and analyzes the reasons for their varying performance.

Story Driven Web Applications

Kern der vorliegenden Arbeit ist die Modellierung komplexer Webapplikationen mit dem Story-Driven-Modeling Ansatz.Ziel ist es hierbei,die komplette Applikation allein durch die Spezifikation von Modellen zu entwickeln. Das händische Erstellen von Quelltext ist nicht notwendig. Die vorliegende Arbeit zeigt sowohl den Forschungsweg, der die angestrebte Modellierung von Webapplikationen ermöglicht, als auch die resultierenden Ergebnisse auf. Zur Unterstützung des Entwicklungsprozesses wird weiterhin ein modellgetriebener Softwareentwicklungsprozess vorgestellt, der die Modellierung einer Webapplikation von der Aufnahme der Anforderungen, bis zur abschließenden Erzeugung des Quelltextes durch Codegenerierung aus den spezifizierten Modellen, abdeckt. Für den definierten Prozess wird ferner Werkzeugunterstützung innerhalb der Fujaba Toolsuite bereitgestellt. Im Rahmen der vorliegenden Arbeit wurde die bestehede Toolsuite hierzu um alle zur Prozessunterstützung notwendigen Werkzeuge erweitert. Darüber hinaus wurden im Rahmen der vorliegenden Arbeit die in Fujaba bestehenden Werkzeuge erweitert, um neben den klassischen Möglichkeiten zur Modellierung komplexer Java-Applikationen auch die Erzeugung von Webapplikationen zu ermöglichen. Neben der genauen Beschreibung des Entwicklungsprozesses werden im Rahmen dieser Arbeit die entstehenden Webapplikationen mit ihren spezifischen Eigenschaften genau beschrieben. Zur Erzeugung dieser Applikationen wird neben dem Entwicklungsprozess die Diagrammart der Workflowdiagramme eingeführt und beschrieben. Diese Diagramme dienen der Abbildung des intendierten Userworkflows der Applikation im Rahmen der Anforderungsanalyse und stellen im weiteren Entwicklungsverlauf ein dediziertes Entwicklungsartefakt dar. Basierend auf den Workflowdiagrammen werden sowohl die grafische Benutzerschnittstelle der Webapplikation beschrieben, als auch ein Laufzeitsystem initialisiert, welches basierend auf den im Workflowdiagramm abgebildeten Abläufen die Anwendung steuert. Dieses Laufzeitsystem wurde im Rahmen der vorliegenden Arbeit entwickelt und in der Prozessunterstützung verankert. Alle notwendigen Änderungen und Anpassungen und Erweiterungen an bereits bestehenden Teilen der Fujaba Toolsuite werden unter dem Aspekt der Erstellung clientseitiger Datenmodelle einer Webapplikation genau beschrieben und in Verbindung mit den zu erfüllenden Voraussetzungen erläutert. In diesem Zusammenhang wird ebenfalls beschrieben, wie Graphtransformationen zur Umsetzung von Businesslogik auf der Clientseite einer Webapplikation eingesetzt werden können und auf welche Weise Datenmodelländerungen zwischen unterschiedlichen Clients synchronisiert werden können. Insgesamt zeigt die vorliegende Arbeit einen Weg auf, den bestehenden Ansatz des StoryDriven-Modeling für die Erzeugung von Webapplikationen einzusetzen. Durch die im Rahmen dieser Arbeit beschriebene Herangehensweise werden hierbei gleichzeitig Webbrowser zu einer neuen Klasse von Graphersetzungs-Engines erweitert, indem Graphtransformationen innerhalb der Ajax-Engine des Browsers ausgeliefert und ausgeführt werden.

Traceability support in software product lines

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para a obtenção do grau de Mestre em Engenharia Informática.

A framework to operate transformations between distinct models differing in modelling concepts

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para obtenção do grau de Mestre em Engenharia Electrotécnica e de Computadores

Sustainability of systems interoperability in dynamic business networks

Dissertação para obtenção do Grau de Doutor em Engenharia Electrotécnica e de Computadores

Derivation and consistency checking of models in early software product line engineering

Dissertação para obtenção do Grau de Doutor em Engenharia Informática

Analysable software language translations

Dissertação para obtenção do Grau de Doutor em Engenharia Informática

Child programming: an adequate domain specific language for programming specific robots

Dissertação para obtenção do Grau de Mestre em Engenharia Informática

Uma abordagem para derivar modelos de requisitos a partir de mecanismos de reconhecimento de voz

A elicitação de requisitos é uma das primeiras actividades do processo de Engenharia de Requisitos. Através desta etapa é possível capturar e estruturar os requisitos dos stakeholders e do sistema a ser implementado. Tipicamente esta estruturação é representada através de notação gráfica com o auxílio de ferramentas CASE. Estas ferramentas tornam esta actividade exclusiva, em termos de acessibilidade, a engenheiros sem deficiências físicas devido à complexidade das funcionalidades oferecidas pelas mesmas que permitem construir estes modelos. Nesta dissertação de mestrado é proposto desenvolver uma abordagem com suporte de uma ferramenta para melhorar a acessibilidade, e consequentemente,integrar um engenheiro de requisitos com limitações físicas na actividade de elicitação de requisitos. A ferramenta também possibilita uma alternativa para os stakeholders em geral para produzir modelos sem usar as mãos quando for mais conveniente. Esta abordagem propõe usar mecanismos de voz na geração de modelos de requisitos, mais concretamente modelos de requisitos orientados a objectivos, modelos de objectos e modelos de features usando técnicas de Model-Driven Development (MDD) (e.g., metamodelos). O stakeholder assim irá capturar os seus requisitos através de mecanismos de reconhecimento de voz, sendo automaticamente realizada uma transformação do seu discurso para um modelo KAOS, para um modelo conceptual ou para um modelo de features.