Contribuição ao conhecimento da flora medicinal de Roraima

São apresentados dados etnobotânicos sobre a flora medicinal do Território Federal de Roraima, identificando-se cientificamente as espécies encontradas em levantamentos efetuados nos municípios de Boa Vista e Caracaraí.

NOTA SOBRE ÂNGULO MICROFIBRILAR NO XILEMA DE ANDIRA PARVI FLORA DUCKE E SACCOGLOTIS GUIANENSIS BENTH DA AMAZÔNIA

O ângulo microfibrilar exerce um efeito sobre uma ampla faixa de propriedades da madeira e a fibra em si. Nas duas espécies estudadas o ângulo mostra um decréscimo em direção ao càmbio. Na base da árvore são menores. O grau de correlação com comprimento de fibra á altamente significante.

RESERVA FLORESTAL DUCKE: DIVERSIDADE E COMPOSIÇÃO DA FLORA VASCULAR

A Reserva Florestal Ducke, localizada próxima a Manaus (AM), com uma área de 100 Km2, é um dos locais com maior densidade de coletas depositadas no herbário do INPA. Sua flora vascular foi aqui caracterizada, através do levantamento de 7.107 exsicatas, das quais 4.946 estão determinadas ao nível de espécie. Embora muitas amostras estejam estéreis, indeterminadas e ainda não examinadas por especialistas, esta amostragem permitiu uma caracterização preliminar da flora da Reserva. Foi constatada a presença de 1.199 espécies (ou 1.453, se incluídas as indeterminadas), distribuídas em 510 gêneros e 112 famílias. Os 10 gêneros mais diversificados — com um total de 222 espécies — são predominantemente arborescentes: Pouteria(38 espécies), Miconia(27), Protium(24), Licania(23), Inga(21), Ocotea(20), Swartzia(19), Eschweilera( 19), Virola( 16) Sloanea(15). As 10 espécies mais coletadas constituem apenas 8,2% do universo de amostras determinadas ao nível específico. Estas, também, são árvores: Micropholis guyanensis(A. DC.) Pierre, Chrysophyllum sanguinolentum(Pierre) Baehni, Trattinnickia glazioviiSwart, Goupia glabraAubl., Scleronema micranthumDucke, Aniba panurensis(Meissner) Mez, Laetia procera(Poeppig) Eicbler, Caryocar villosum(Aublet) Pers., Brosimum rubescensTaubert, Cecropia sciadopliyllaMart. Apenas 123 espécies (10,3% das espécies determinadas) são consideradas comuns, sendo aquelas com 10 ou mais coletas. A maioria das 1.199 espécies determinadas são muito raras: 68% representadas por três ou menos coletas e 43% representadas por apenas uma coleta. Portanto, muitas outras espécies "raras" serão acrescentadas após novas visitas ao local, ou através do estudo do material ainda indeterminado. E apresentada uma discussão e gráficos sobre as famílias e gêneros mais diversificados e mais coletados.

ANTHOPHORIDAE (HYMENOPTERA; APOIDEA) E FLORA ASSOCIADA EM UMA FORMAÇÃO DE CERRADO NO MUNICÍPIO DE BARREIRINHAS, MA, BRASIL

Os cerrados maranhenses estão localizados na Bacia Parnaibana principalmente ao leste e sul do estado. A área de estudo localiza-se na Mesorregião Oeste do Maranhão entre os municípios de Urbano Santos e Barreirinhas. As coletas foram realizadas mensalmente de setembro dc 1991 a agosto de 1992 com 12 horas de duração cada. Foram capturados 196 espécimens, 17 espécies e 6 gêneros de Anthophoridae. Centrisfoi o gênero com maior diversidade e abundância (7 espécies; 115 indivíduos), seguido de Xylocopa(4; 59) e Paratetrapedia(3; 17). Estiveram em atividade durante o ano todo, porém os maiores picos de abundância no número de indivíduos foram nos meses de outubro e novembro, que coincidiram com o período de maior floração do cerrado. Leguminosae e Malpighiaceae constiuem-se nas famílias de plantas mais visitadas pelos Anthophoridae em Barreirinhas.

Duas novas ocorrências de Orchidaceae para a flora Brasileira

Duas espécies de Orchidaceae, Myoxanthus parvilabius (C. Schweinf.) Luer e Trichosalpinx intricata (Lind) Luer, foram registradas pela primeira vez para a flora brasileira, ambas encontradas no município de Santa Izabel do Rio Negro, Amazonas, Brasil.

Effects of residues on the degradation of PHA produced from mixed microbial cultures and processed in extrusion

Thermal degradation upon melting is one of the major drawbacks reported for polyhydroxyalkanoates (PHA). However, the role of residues originating from the fermentation and the extraction steps on the thermal stability of this class of biopolymers still needs to be clarified. In the particular case of PHA produced from mixed microbial cultures (MMC), this topic is even less documented in the literature. Here, two polyhydroxy(butyrate-co-valerate) (PHBV) produced from MMC enriched in PHA accumulating organisms and fed with cheese whey were studied. A micro extrusion line is used to produce filaments and assess the processability and the degradation of processed PHBV. The prototype micro extrusion line allows for studying grams of materials. The two PHBV contain 18 mol% HV. PHBV was recovered with 11 wt% residues, and further submitted to a purification procedure resulting in a second biopolyester containing less than 2 wt% impurities. The thermorheological characterization of the two PHBV is first presented, together with their semicrystalline properties. Then the processing windows of the two biopolyesters are presented. Finally, the properties of extruded filaments are reported and the thermomechanical degradation of PHBV is extensively studied. The structure was assessed by wide angle X-ray diffraction, mechanical and rheological properties are reported, thermal properties are studied with differential scanning calorimetry and thermogravimetric analysis, whereas Fourier Transform Infrared spectroscopy was used to assess the impact of the extrusion on PHBV chemical structure. All results obtained with the two PHBV are compared to assess the effects of residues on both PHBV processability and degradation.

Biofunctionalization of titanium surfaces for dental implants: osteogenic, anti-microbial and tribocorrosion resistant surfaces

PhD thesis in Biomedical Engineering

Proteins on microbial identification: past achievements, present state-of-the-art, and future challenges

The use of chemical analysis of microbial components, including proteins, became an important achievement in the 80’s of the last century to the microbial identification. This led a more objective microbial identification scheme, called chemotaxonomy, and the analytical tools used in the field are mainly 1D/2D gel electrophoresis, spectrophotometry, high-performance liquid chromatography, gas chromatography, and combined gas chromatography-mass spectrometry. The Edman degradation reaction was also applied to peptides sequence giving important insights to the microbial identification. The rapid development of these techniques, in association with knowledge generated by DNA sequencing and phylogeny based on rRNA gene and housekeeping genes sequences, boosted the microbial identification to an unparalleled scale. The recent results of mass spectrometry (MS), like Matrix-Assisted Laser Desorption/Ionisation Time-of-Flight (MALDI-TOF), for rapid and reliable microbial identification showed considerable promise. In addition, the technique is rapid, reliable and inexpensive in terms of labour and consumables when compared with other biological techniques. At present, MALDI-TOF MS adds an additional step for polyphasic identification which is essential when there is a paucity of characters or high DNA homologies for delimiting very close related species. The full impact of this approach is now being appreciated when more diverse species are studied in detail and successfully identified. However, even with the best polyphasic system, identification of some taxa remains time-consuming and determining what represents a species remains subjective. The possibilities opened with new and even more robust mass spectrometers combined with sound and reliable databases allow not only the microbial identification based on the proteome fingerprinting but also include de novo specific proteins sequencing as additional step. These approaches are pushing the boundaries in the microbial identification field.

Advances in microbial diagnosis: using mass spectrometry for proteomics and genomics applications

Since the last two decades mass spectrometry (MS) has been applied to analyse the chemical cellular components of microorganisms, providing rapid and discriminatory proteomic profiles for their species identification and, in some cases, subtyping. The application of MS for the microbial diagnosis is currently well-established. The remarkable reproducibility and objectivity of this method is based on the measurement of constantly expressed and highly abundant proteins, mainly important conservative ribosomal proteins, which are used as markers to generate a cellular fingerprint. Mass spectrometry based on matrix-assisted laser desorption ionization-time of flight (MALDI- TOF) technique has been an important tool for the microbial diagnostic. However, some technical limitation concerning both MALDI-TOF and its used protocols for sample preparation have fostered the research of new mass spectrometry systems (e.g. LC MS/MS). LC MS/MS is able to generate online mass spectra of specific ions with further online sequencing of these ions, which include both specific proteins and DNA fragments. In this work a set of data for yeasts and filamentous fungi diagnostic obtained through an international collaboration project involving partners from Argentina, Brazil, Chile and Portugal will be presented and discussed.

Continuous fungal treatment of non-sterile veterinary hospital effluent: pharmaceuticals removal and microbial community assessment

Source point treatment of effluents with a high load of pharmaceutical active compounds (PhACs), such as hospital wastewater, is a matter of discussion among the scientific community. Fungal treatments have been reported to be successful in degrading this type of pollutants and, therefore, the white-rot fungus Trametes versicolor was applied for the removal of PhACs from veterinary hospital wastewater. Sixty-six percent removal was achieved in a non-sterile batch bioreactor inoculated with T. versicolor pellets. On the other hand, the study of microbial communities by means of DGGE and phylogenetic analyses led us to identify some microbial interactions and helped us moving to a continuous process. PhAC removal efficiency achieved in the fungal treatment operated in non-sterile continuous mode was 44 % after adjusting the C/N ratio with respect to the previously calculated one for sterile treatments. Fungal and bacterial communities in the continuous bioreactors were monitored as well.

Lard as a suitable and cheap substrate for microbial lipids production by Yarrowia lipolytica

[Excerpt] Current agricultural and industrial practices have led to the generation of large amounts of various low-value or negative cost crude wastes, which are difficult and economically notattractive to treat and valorize. One important example of waste generation is animal fat, commonly found in tanning process and slaughterhouses. These wastes, in which the lipids are often the main and most problematic components, are not currently used effectively and there are almost no application methods to recover the respective value. (...)

Biotechnological valorization of waste cooking oils: lipase and microbial lipids production by Yarrowia lipolytica

[Excerpt] Waste cooking oils (WCO) generated from vegetable oils used at high temperatures in food frying, cause environmental problems and must be reutilized. New strategies to valorize these wastes are attracting a great scientific interest due to the important advantages offered from an economic and environmental point of view. A microbial platform can be established to convert low-value hydrophobic substrates, such as waste cooking oils, to microbial lipids (single cell oil, SCO) and other value-added bioproducts, such as lipase. (...)

Microbial respiration with chlorine oxyanions: diversity and physiological and biochemical properties of chlorate- and perchlorate-reducing microorganisms

Chlorine oxyanions are valuable electron acceptors for microorganisms. Recent findings have shed light on the natural formation of chlorine oxyanions in the environment. These suggest a permanent introduction of respective compounds on Earth, long before their anthropogenic manufacture. Microorganisms that are able to grow by the reduction of chlorate and perchlorate are affiliated with phylogenetically diverse lineages, spanning from the Proteobacteria to the Firmicutes and archaeal microorganisms. Microbial reduction of chlorine oxyanions can be found in diverse environments and different environmental conditions (temperature, salinities, pH). It commonly involves the enzymes perchlorate reductase (Pcr) or chlorate reductase (Clr) and chlorite dismutase (Cld). Horizontal gene transfer seems to play an important role for the acquisition of functional genes. Novel and efficient Clds were isolated from microorganisms incapable of growing on chlorine oxyanions. Archaea seem to use a periplasmic Nar-type reductase (pNar) for perchlorate reduction and lack a functional Cld. Chlorite is possibly eliminated by alternative (abiotic) reactions. This was already demonstrated for Archaeoglobus fulgidus, which uses reduced sulfur compounds to detoxify chlorite. A broad biochemical diversity of the trait, its environmental dispersal, and the occurrence of relevant enzymes in diverse lineages may indicate early adaptations of life toward chlorine oxyanions on Earth.

Tapping the wealth of microbial data in high-throughput metabolic model reconstruction

Genome-scale metabolic models are valuable tools in the metabolic engineering process, based on the ability of these models to integrate diverse sources of data to produce global predictions of organism behavior. At the most basic level, these models require only a genome sequence to construct, and once built, they may be used to predict essential genes, culture conditions, pathway utilization, and the modifications required to enhance a desired organism behavior. In this chapter, we address two key challenges associated with the reconstruction of metabolic models: (a) leveraging existing knowledge of microbiology, biochemistry, and available omics data to produce the best possible model; and (b) applying available tools and data to automate the reconstruction process. We consider these challenges as we progress through the model reconstruction process, beginning with genome assembly, and culminating in the integration of constraints to capture the impact of transcriptional regulation. We divide the reconstruction process into ten distinct steps: (1) genome assembly from sequenced reads; (2) automated structural and functional annotation; (3) phylogenetic tree-based curation of genome annotations; (4) assembly and standardization of biochemistry database; (5) genome-scale metabolic reconstruction; (6) generation of core metabolic model; (7) generation of biomass composition reaction; (8) completion of draft metabolic model; (9) curation of metabolic model; and (10) integration of regulatory constraints. Each of these ten steps is documented in detail.