Counting Highly Cited Papers for University Research Assessment: Conceptual and Technical Issues

A Kuhnian approach to research assessment requires us to consider that the important scientific breakthroughs that drive scientific progress are infrequent and that the progress of science does not depend on normal research. Consequently, indicators of research performance based on the total number of papers do not accurately measure scientific progress. Similarly, those universities with the best reputations in terms of scientific progress differ widely from other universities in terms of the scale of investments made in research and in the higher concentrations of outstanding scientists present, but less so in terms of the total number of papers or citations. This study argues that indicators for the 1% high-citation tail of the citation distribution reveal the contribution of universities to the progress of science and provide quantifiable justification for the large investments in research made by elite research universities. In this tail, which follows a power low, the number of the less frequent and highly cited important breakthroughs can be predicted from the frequencies of papers in the upper part of the tail. This study quantifies the false impression of excellence produced by multinational papers, and by other types of papers that do not contribute to the progress of science. Many of these papers are concentrated in and dominate lists of highly cited papers, especially in lower-ranked universities. The h-index obscures the differences between higher- and lower-ranked universities because the proportion of h-core papers in the 1% high-citation tail is not proportional to the value of the h-index.

Análisis de la influencia de imperfecciones en el borde de ataque en perfiles aerodinámicos a bajos números de Reynolds

En esta tesis se ha analizado la influencia que tienen ciertas imperfecciones en el borde de ataque de un perfil aerodinámico sobre el comportamiento aerodinámico general del mismo, centrándose fundamentalmente en la influencia sobre el coeficiente de sustentación máxima, coeficiente de resistencia y sobre la eficiencia aerodinámica del perfil, es decir sobre la relación entre la sustentación y la resistencia aerodinámicas. También se ha analizado su influencia en otros aspectos, como la entrada en pérdida, ángulo de ataque de sustentación máxima, ángulo de ataque de eficiencia máxima, coeficiente de momento aerodinámico y posición del centro aerodinámico. Estos defectos de forma en el borde de ataque pueden aparecer en algunos procesos de fabricación de determinados elementos aerodinámicos, como pueden ser las alas de pequeños aviones no tripulados o las palas de aeroturbina. Los perfiles se ha estudiado a bajos números de Reynolds debido a su uso reciente en una amplia gama de aplicaciones, desde vehículos aéreos no tripulados (UAV) hasta palas de aeroturbina de baja potencia, e incluso debido a su potencial utilización en aeronaves diseñadas para volar en atmósferas de baja densidad. El objeto de estudio de esta tesis no ha sido analizado en profundidad en la literatura científica, aunque sí que se ha estudiado por varios autores el comportamiento de perfiles a bajos números de Reynolds, con ciertas protuberancias sobre su superficie o también con formación de hielo en el borde de ataque. Para la realización de este estudio se han analizado perfiles de distinto tipo, perfiles simétricos y con curvatura, perfiles laminares, y todos ellos con igual o distinto espesor, con el objeto de obtener y comparar la influencia del fenómeno estudiado sobre cada tipo de perfil y así analizar su grado de sensibilidad a estas imperfecciones en la geometría del borde de ataque. Este trabajo ha sido realizado experimentalmente utilizando una túnel aerodinámico diseñado específicamente a tal efecto, así como una balanza electrónica para medir las fuerzas y los momentos sobre el perfil, y un escáner de presiones para medir la distribución de presiones sobre la superficie de los perfiles en determinados casos de interés. La finalidad de este estudio está orientada al establecimiento de criterios para cuantificar la influencia en la aerodinámica del perfil que tiene el hecho de que el borde de ataque presente una discontinuidad geométrica, con el objeto de poder establecer los límites de aceptación o rechazo de estas piezas en el momento de ser fabricadas. Del análisis de los casos estudiados se puede concluir que según aumenta el tamaño de la imperfección del borde de ataque, la sustentación aerodinámica máxima en general disminuye, al igual que la eficiencia aerodinámica máxima, pues la resistencia aerodinámica aumenta. Sin embargo, en algunos casos, para pequeños defectos se produce un efecto contrario. La sustentación máxima aumenta apreciablemente sin apenas pérdida de eficiencia aerodinámica máxima. ABSTRACT The aim of this thesis is to analyze the effects of leading edge imperfections on the aerodynamic characteristics of airfoils at low Reynolds numbers. The leading edge imperfection here considered being a slight displacement of half airfoil with respect to the other. This study has focus on its influence on the airfoil’s aerodynamic lift, drag and on the aerodynamic efficiency of the airfoil, that is, the relationship between the aerodynamic lift and drag. It has also been studied how this fact may alter some other aerodynamic aspects of airfoils, such as stall, angle of attack of maximum lift, angle of maximum efficiency, aerodynamic moment coefficient and aerodynamic center position. These imperfections in the leading edge may appear in some manufacturing processes of certain aerodynamic elements, such as unmanned aircraft wings or wind turbine blades. The study has focused on the analysis of the behavior at low Reynolds numbers due to recent use of low Reynolds numbers airfoils in a wide range of applications, from unmanned aerial vehicles (UAV) to low power wind turbine blades, or even due to their potential use in aircraft designed to fly in low density atmospheres as the one existing in Mars. This phenomenon has not been deeply analyzed in the literature, although several authors have discussed on airfoils at low Reynolds number, with leading edge protuberances or airfoils with ice accretions. Various types of airfoils have been analyzed, laminar and non-laminar, symmetric and curved airfoils, and airfoils with different thickness, in order to compare the degree of influence of the phenomenon studied on each airfoil type and thus, to estimate the degree of sensitivity to the anomaly geometry. The study was carried out experimentally using a test chamber designed specifically for this purpose, as well as an electronic balance to measure the forces and moments on the airfoil, and a pressure scanner to measure distribution of pressures in certain cases. The main purpose of this research is to establish a criteria for quantifying the influence that a slight displacement of half aerofoil with respect to the other has in the degradation of aerodynamics characteristics, aiming at establishing the acceptance limits for these pieces when they are manufactured, according to the type of airfoil used. Based on the results obtained from the analysis of the cases under study it can be concluded that displacements, within the range of study, decreases maximum aerodynamic lift, but the aerodynamic drag increases, and consequently there is a reduction of aerodynamic efficiency. However, in some cases, for small defects opposite effect occurs. The maximum lift increases significantly with little loss of maximum aerodynamic efficiency.

A wind tunnel two-dimensional parametric investigation of biplane configurations

This paper presents an experimental and systematic investigation about how geometric parameters on a biplane configuration have an influence on aerodynamic parameters. This experimental investigation has been developed in a two-dimensional approach. Theoretical studies about biplanes configurations have been developed in the past, but there is not enough information about experimental wind tunnel data at low Reynolds number. This two-dimensional study is a first step to further tridimensional investigations about the box wing configuration. The main objective of the study is to find the relationships between the geometrical parameters which present the best aerodynamic behavior: the highest lift, the lowest drag and the lowest slope of the pitching moment. A tridimensional wing-box model will be designed following the pattern of the two dimensional study conclusions. It will respond to the geometrical relationships that have been considered to show the better aerodynamic behavior. This box-wing model will be studied in the aim of comparing the advantages and disadvantages between this biplane configuration and the plane configuration, looking for implementing the box-wing in the UAV?s field. Although the box wing configuration has been used in a small number of existing UAV, prestigious researchers have found it as a field of high aerodynamic and structural potential.

Molecular characterization of a mutable pigmentation phenotype and isolation of the first active transposable element from Sorghum bicolor

Accumulation of red phlobaphene pigments in sorghum grain pericarp is under the control of the Y gene. A mutable allele of Y, designated as y-cs (y-candystripe), produces a variegated pericarp phenotype. Using probes from the maize p1 gene that cross-hybridize with the sorghum Y gene, we isolated the y-cs allele containing a large insertion element. Our results show that the Y gene is a member of the MYB-transcription factor family. The insertion element, named Candystripe1 (Cs1), is present in the second intron of the Y gene and shares features of the CACTA superfamily of transposons. Cs1 is 23,018 bp in size and is bordered by 20-bp terminal inverted repeat sequences. It generated a 3-bp target site duplication upon insertion within the Y gene and excised from y-cs, leaving a 2-bp footprint in two cases analyzed. Reinsertion of the excised copy of Cs1 was identified by Southern hybridization in the genome of each of seven red pericarp revertant lines tested. Cs1 is the first active transposable element isolated from sorghum. Our analysis suggests that Cs1-homologous sequences are present in low copy number in sorghum and other grasses, including sudangrass, maize, rice, teosinte, and sugarcane. The low copy number and high transposition frequency of Cs1 imply that this transposon could prove to be an efficient gene isolation tool in sorghum.

New patterns of centrifugally driven thermal convection

An experimental study is described of convection driven by thermal buoyancy in the annular gap between two corotating coaxial cylinders, heated from the outside and cooled from the inside. Steady convection patterns of the hexaroll and of the knot type are observed in the case of high Prandtl number fluids, for which the Coriolis force is sufficiently small. Oblique rolls and phase turbulence in the form of irregular patterns of convection can also be observed in wide regions of the parameter space.

Generalized flows, intrinsic stochasticity, and turbulent transport

The study of passive scalar transport in a turbulent velocity field leads naturally to the notion of generalized flows, which are families of probability distributions on the space of solutions to the associated ordinary differential equations which no longer satisfy the uniqueness theorem for ordinary differential equations. Two most natural regularizations of this problem, namely the regularization via adding small molecular diffusion and the regularization via smoothing out the velocity field, are considered. White-in-time random velocity fields are used as an example to examine the variety of phenomena that take place when the velocity field is not spatially regular. Three different regimes, characterized by their degrees of compressibility, are isolated in the parameter space. In the regime of intermediate compressibility, the two different regularizations give rise to two different scaling behaviors for the structure functions of the passive scalar. Physically, this means that the scaling depends on Prandtl number. In the other two regimes, the two different regularizations give rise to the same generalized flows even though the sense of convergence can be very different. The “one force, one solution” principle is established for the scalar field in the weakly compressible regime, and for the difference of the scalar in the strongly compressible regime, which is the regime of inverse cascade. Existence and uniqueness of an invariant measure are also proved in these regimes when the transport equation is suitably forced. Finally incomplete self similarity in the sense of Barenblatt and Chorin is established.

Symmetries in bacterial motility

Descriptions are given of three kinds of symmetries encountered in studies of bacterial locomotion, and of the ways in which they are circumvented or broken. A bacterium swims at very low Reynolds number: it cannot propel itself using reciprocal motion (by moving through a sequence of shapes, first forward and then in reverse); cyclic motion is required. A common solution is rotation of a helical filament, either right- or left-handed. The flagellar rotary motor that drives each filament generates the same torque whether spinning clockwise or counterclockwise. This symmetry is broken by coupling to the filament. Finally, bacterial populations, grown in a nutrient medium from an inoculum placed at a single point, usually move outward in symmetric circular rings. Under certain conditions, the cells excrete a chemoattractant, and the rings break up into discrete aggregates that can display remarkable geometric order.

Mechanism of DNA polymerase II-mediated frameshift mutagenesis

Escherichia coli possesses three SOS-inducible DNA polymerases (Pol II, IV, and V) that were recently found to participate in translesion synthesis and mutagenesis. Involvement of these polymerases appears to depend on the nature of the lesion and its local sequence context, as illustrated by the bypass of a single N-2-acetylaminofluorene adduct within the NarI mutation hot spot. Indeed, error-free bypass requires Pol V (umuDC), whereas mutagenic (−2 frameshift) bypass depends on Pol II (polB). In this paper, we show that purified DNA Pol II is able in vitro to generate the −2 frameshift bypass product observed in vivo at the NarI sites. Although the ΔpolB strain is completely defective in this mutation pathway, introduction of the polB gene on a low copy number plasmid restores the −2 frameshift pathway. In fact, modification of the relative copy number of polB versus umuDC genes results in a corresponding modification in the use of the frameshift versus error-free translesion pathways, suggesting a direct competition between Pol II and V for the bypass of the same lesion. Whether such a polymerase competition model for translesion synthesis will prove to be generally applicable remains to be confirmed.

Tiggers and DNA transposon fossils in the human genome.

We report several classes of human interspersed repeats that resemble fossils of DNA transposons, elements that move by excision and reintegration in the genome, whereas previously characterized mammalian repeats all appear to have accumulated by retrotransposition, which involves an RNA intermediate. The human genome contains at least 14 families and > 100,000 degenerate copies of short (180-1200 bp) elements that have 14- to 25-bp terminal inverted repeats and are flanked by either 8 bp or TA target site duplications. We describe two ancient 2.5-kb elements with coding capacity, Tigger1 and -2, that closely resemble pogo, a DNA transposon in Drosophila, and probably were responsible for the distribution of some of the short elements. The deduced pogo and Tigger proteins are related to products of five DNA transposons found in fungi and nematodes, and more distantly, to the Tc1 and mariner transposases. They also are very similar to the major mammalian centromere protein CENP-B, suggesting that this may have a transposase origin. We further identified relatively low-copy-number mariner elements in both human and sheep DNA. These belong to two subfamilies previously identified in insect genomes, suggesting lateral transfer between diverse species.

Addiction protein Phd of plasmid prophage P1 is a substrate of the ClpXP serine protease of Escherichia coli.

Plasmid-encoded addiction genes augment the apparent stability of various low copy number bacterial plasmids by selectively killing plasmid-free (cured) segregants or their progeny. The addiction module of plasmid prophage P1 consists of a pair of genes called phd and doc. Phd serves to prevent host death when the prophage is retained and, should retention mechanisms fail, Doc causes death on curing. Doc acts as a cell toxin to which Phd is an antidote. In this study we show that host mutants with defects in either subunit of the ClpXP protease survive the loss of a plasmid that contains a P1 addiction module. The small antidote protein Phd is fully stable in these two mutant hosts, whereas it is labile in a wild-type host. We conclude that the role of ClpXP in the addiction mechanism of P1 is to degrade the Phd protein. This conclusion situates P1 among plasmids that elicit severe withdrawal symptoms and are able to do so because they encode both a cell toxin and an actively degraded macromolecule that blocks the synthesis or function of the toxin.

Desenvolvimento de dispositivo movimentador automatizado de amostras com vista à aplicação em medidas de radioosótopos que possuem curto tempo de meia-vida

Medidas de espectroscopia gama de alta resolução têm diversas aplicações. Aplicações envolvendo medidas de radioisótopos de meia-vida curta podem apresentar problemas de baixa precisão nas contagens quando a fonte radioativa está distante do detector e de perda de acurácia por efeitos de tempo morto e empilhamento de pulsos em situação de altas taxas de contagens. Um modo de minimizar esses problemas é alterando a posição da fonte radioativa durante o processo de medição, aproximando-a do detector conforme sua atividade diminui e assim maximizando o número de contagens medidas. Neste trabalho, foi desenvolvido o Movimentador de Amostras Radioativas Automatizado (MARA), um aparato de baixo custo, feito com materiais de baixo número atômico e leve, projetado e construído para auxiliar nas medidas de espectroscopia gama, capaz de controlar a distância entre a fonte e o detector, permitindo inclusive que ocorra alteração dessa distância durante o processo de medição. Por ser automatizado ele otimiza o tempo do operador, que tem total liberdade para criar suas rotinas de medidas no dispositivo, além de evitar que o mesmo tome uma parcela da dose radioativa. Foi também feita uma interface que permite controle do MARA e a programação do sistema de aquisição de dados. Foram realizados testes para otimização da operação do sistema MARA e foi verificada a segurança de operação do MARA, não apresentando nenhuma falha durante seus testes. Foi aplicado o teste de repetitividade, por meio de medições com uma fonte calibrada de 60Co, e verificou-se que o sistema de movimentação de prateleiras automatizado reproduziu os resultados do sistema estático com confiabilidade de 95%.

Benthic foraminiferal fauna in the Ionian Sea

To reconstruct paleoceanographic changes in the eastern Mediterranean during the last 330,000 years, we studied benthic foraminifera in a piston core from the Ionian Sea. The fauna exhibits large fluctuations in foraminiferal number, diversity, and species composition. Interglacials are characterized by low foraminiferal number and diversity indicating oligotrophic conditions. Directly below or above interglacial sapropels, increased numbers of low-oxygen-tolerant species indicate a strong reduction of deep water circulation. Glacials are characterized by increased foraminiferal number and diversity and faunas that are dominated by shallow infaunal species indicating mesotrophic conditions. Around glacial sapropel S6 very high foraminiferal numbers and the dominance of shallow and deep infaunal species suggest enhanced organic matter fluxes. These faunal results provide information about changes in the African and North Atlantic climate systems (monsoon and westerlies) controlling the humidity and wind stress in the Mediterranean region.

Meteorological measurements from 8 dropsondes released during POLAR 4 flight on 1993-03-04 along a track orthogonal to the pack ice edge north west of Svalbard

Different parameterizations of subgrid-scale fluxes are utilized in a nonhydrostatic and anelastic mesoscale model to study their influence on simulated Arctic cold air outbreaks. A local closure, a profile closure and two nonlocal closure schemes are applied, including an improved scheme, which is based on other nonlocal closures. It accounts for continuous subgrid-scale fluxes at the top of the surface layer and a continuous Prandtl number with respect to stratification. In the limit of neutral stratification the improved scheme gives eddy diffusivities similar to other parameterizations, whereas for strong unstable stratifications they become much larger and thus turbulent transports are more efficient. It is shown by comparison of model results with observations that the application of simple nonlocal closure schemes results in a more realistic simulation of a convective boundary layer than that of a local or a profile closure scheme. Improvements are due to the nonlocal formulation of the eddy diffusivities and to the inclusion of heat transport, which is independent of local gradients (countergradient transport).

Thallium concentrations and isotope composition of MORB glasses and altered oceani crust from DSDP/ODP Hole 504B and DSDP Hole 52-417D

Hydrothermal fluids expelled from the seafloor at high and low temperatures play pivotal roles in controlling seawater chemistry. However, the magnitude of the high temperature water flux of mid-ocean ridge axes remains widely disputed and the volume of low temperature vent fluids at ridge flanks is virtually unconstrained. Here, we determine both high and low temperature hydrothermal fluid fluxes using the chemical and isotopic mass balance of the element thallium (Tl) in the ocean crust. Thallium is a unique tracer of ocean floor hydrothermal exchange because of its contrasting behavior during seafloor alteration at low and high temperatures and the distinctive isotopic signatures of fresh and altered MORB and seawater. The calculated high temperature hydrothermal water flux is (0.17-2.93)*10**13 kg/yr with a best estimate of 0.72*10**13 kg/yr. This result suggests that only about 5 to 80% of the heat available at mid-ocean ridge axes from the crystallization and cooling of the freshly formed ocean crust, is released by high temperature black smoker fluids.The residual thermal energy ismost likely lost via conduction and/or through the circulation of intermediate temperature hydrothermal fluids that do not alter the chemical budgets of Tl in the ocean crust. The Tl-based calculations indicate that the low temperature hydrothermal water flux at ridge flanks is (0.2-5.4)*10**17 kg/yr. This implies that the fluids have an average temperature anomaly of only about 0.1 to 3.6 °C relative to ambient seawater. If these low temperatures are correct then both Sr and Mg are expected to be relatively unreactive in ridge-flank hydrothermal systems and this may explain why the extent of basalt alteration that is observed for altered ocean crust appears insufficient to balance the oceanic budgets of 87Sr/86Sr and Mg.

Eddy covariance and environmental data of boreal bogs plant species

In boreal bogs plant species are low in number, but they differ greatly in their growth forms and photosynthetic properties. We assessed how ecosystem carbon (C) sink dynamics were affected by seasonal variations in photosynthetic rate and leaf area of different species. Photosynthetic properties (light-response parameters), leaf area development and areal cover (abundance) of the species were used to quantify species-specific net and gross photosynthesis rates (PN and PG, respectively), which were summed to express ecosystem-level PN and PG. The ecosystem-level PG was compared with a gross primary production (GPP) estimate derived from eddy covariance measurements (EC). Species areal cover rather than differences in photosynthetic properties determined the species with the highest PG of both vascular plants and Sphagna. Species-specific contributions to the ecosystem PG varied over the growing season, which in turn determined the seasonal variation in ecosystem PG. The upscaled growing-season PG estimate, 230 g C/m**2, agreed well with the GPP estimated by the EC, 243 g C/m**2. Sphagna were superior to vascular plants in ecosystem-level PG throughout the growing season but had a lower PN. PN results indicated that areal cover of the species together with their differences in photosynthetic parameters shape the ecosystem-level C balance. Species with low areal cover but high photosynthetic efficiency appear to be potentially important for the ecosystem C sink. Results imply that functional diversity may increase the stability of C sink of boreal bogs.