Molecular characterization of sediment bacterial communities affected by fish farming

Fish farming introduces nutrients, microbes and a wide variety of chemicals such as heavy metals, antifoulants and antibiotics to the surrounding environment. Introduction of antibiotics has been linked with the increased incidence of antibiotic resistant pathogenic bacteria in the farm vicinities. In this thesis molecular methods such as quantitative PCR and DNA sequencing were applied to analyze bacterial communities in sediments from fish farms and pristine locations. Altogether four farms and four pristine sites were sampled in the Baltic Sea. Two farm and two pristine locations were sampled over a surveillance period of four years. Furthermore, a new methodology was developed as a part of the study that permits amplifying single microbial genomes and capturing them according to any genetic traits, including antibiotic resistance genes. The study revealed that several resistance genes for tetracycline were found at the sediment underneath the aquaculture farms. The copy number of these genes remained elevated even at a farm that had not used any antibiotics since year 2000, six years before this study started. Similarly, an increase in the amount of mercury resistance gene merA was observed at the aquaculture sediment. The persistence of the resistance genes in absence of any selection pressure from antibiotics or heavy metals suggests that the genes may be introduced to the sediment by the farming process. This is also supported by the diversity pattern of the merA gene between farm and pristine sediments. The bacterial community-level changes in response to fish farming were very complex and no single phylogenetic groups were found that would be typical to fish farm sediments. However, the community structures had some correlation with the exposure to fish farming. Our studies suggest that the established approaches to deal with antibiotic resistance at the aquaculture, such as antibiotic cycling, are fundamentally flawed because they cannot prevent the introduction of the resistance genes and resistant bacteria to the farm area by the farming process. Further studies are required to study the entire fish farming process to identify the sources of the resistance genes and the resistant bacteria. The results also suggest that in order to prevent major microbiological changes in the surrounding aquatic environment, the farms should not be founded in shallow water where currents do not transport sedimenting matter from the farms. Finally, the technique to amplify and select microbial genomes will potentially have a considerable impact in microbial ecology and genomics.

Mercury in Finnish forest lakes and reservoirs : anthropogenic contribution to the load and accumulation in fish

Yhteenveto: Elohopea Suomen metsäjärvissä ja tekoaltaissa: ihmisen vaikutus kuormitukseen ja pitoisuuksiin kaloissa.

Isolation of transforming growth factor-beta 2 cDNA from a fish, Cyprinus carpio by RT-PCR

Transforming Growth Factors-beta (TGF-beta s) have been described in many vertebrate species of amphibians, aves and mammals. In this report we demonstrate the presence of TGF-beta 2 in pisces. TGF-beta 2 has been cloned from a fish, Cyrinus carpio, by RT-PCR using degenerate oligonucleotide primers. Sequence analysis of the amplified product and alignment of the deduced amino acid sequence with the human TGF-beta 2 amino acid sequence revealed 81% and 93% identity in the precursor and the mature regions, respectively. The northern blot analysis of fish heart RNA shows a major messenger RNA species of about 8.0 kb and two messages of very low abundance of about 5.0 kb and 4.0 kb. The identification of TGF-beta 2 isoform in Pisces and it's high degree of homology with the mammalian isoform suggests that among all TGF-beta isoforms, TGF-beta 2 is the most conserved during evolution. (C) 1997 Elsevier Science B.V.

Predatory Fish Select for Coordinated Collective Motion in Virtual Prey

Movement in animal groups is highly varied and ranges from seemingly disordered motion in swarms to coordinated aligned motion in flocks and schools. These social interactions are often thought to reduce risk from predators, despite a lack of direct evidence. We investigated risk-related selection for collective motion by allowing real predators ( bluegill sunfish) to hunt mobile virtual prey. By fusing simulated and real animal behavior, we isolated predator effects while controlling for confounding factors. Prey with a tendency to be attracted toward, and to align direction of travel with, near neighbors tended to form mobile coordinated groups and were rarely attacked. These results demonstrate that collective motion could evolve as a response to predation, without prey being able to detect and respond to predators.

Fish inspired biomimetic ionic polymer metal composite pectoral fins using labriform propulsion

Ionic polymer metal composites (IPMC) are a new class of smart materials that have attractive characteristics such as muscle like softness, low voltage and power consumption, and good performance in aqueous environments. Thus, IPMC’s provide promising application for biomimetic fish like propulsion systems. In this paper, we design and analyze IPMC underwater propulsor inspired from swimming of Labriform fishes. Different fish species in nature are source of inspiration for different biomimetic flapping IPMC fin design. Here, three fish species with high performance flapping pectoral fin locomotion is chosen and performance analysis of each fin design is done to discover the better configurations for engineering applications. In order to describe the behavior of an active IPMC fin actuator in water, a complex hydrodynamic function is used and structural model of the IPMC fin is obtained by modifying the classical dynamic equation for a slender beam. A quasi-steady blade element model that accounts for unsteady phenomena such as added mass effects, dynamic stall, and the cumulative Wagner effect is used to estimate the hydrodynamic performance of the flapping rectangular shape fin. Dynamic characteristics of IPMC actuated flapping fins having the same size as the actual fins of three different fish species, Gomphosus varius, Scarus frenatus and Sthethojulis trilineata, are analyzed with numerical simulations. Finally, a comparative study is performed to analyze the performance of three different biomimetic IPMC flapping pectoral fins.

Modulation of redox regulatory molecules and electron transport chain activity in muscle of air breathing fish Heteropneustes fossilis under air exposure stress

Responses of redox regulatory system to long-term survival (> 18 h) of the catfish Heteropneustes fossilis in air are not yet understood. Lipid and protein oxidation level, oxidant (H2O2) generation, antioxidative status (levels of superoxide dismutase, catalase, glutathione peroxidase and reductase, ascorbic acid and non-protein sulfhydryl) and activities of respiratory complexes (I, II, III and IV) in mitochondria were investigated in muscle of H. fossilis under air exposure condition (0, 3, 6, 12 and 18 h at 25 A degrees C). The increased levels of both H2O2 and tissue oxidation were observed due to the decreased activities of antioxidant enzymes in muscle under water deprivation condition. However, ascorbic acid and non-protein thiol groups were the highest at 18 h air exposure time. A linear increase in complex II activity with air exposure time and an increase up to 12 h followed by a decrease in activity of complex I at 18 h were observed. Negative correlation was observed for complex III and V activity with exposure time. Critical time to modulate the above parameters was found to be 3 h air exposure. Dehydration induced oxidative stress due to modulation of electron transport chain and redox metabolizing enzymes in muscle of H. fossilis was clearly observed. Possible contribution of redox regulatory system in muscle tissue of the fish for long-term survival in air is elucidated. Results of the present study may be useful to understand the redox metabolism in muscle of fishes those are exposed to air in general and air breathing fishes in particular.

Fish distribution dynamics in the Aghanashini estuary of Uttara Kannada, west coast of India

Fish diversity (77 species) in the Aghanashini River estuary of the Indian west coast is linked to variable salinity conditions and zones I, II and III for high, medium and low salinity respectively. Zone I, the junction between Arabian Sea and the estuary, had all species in yearly succession due to freshwater conditions in monsoon to high salinity in pre-monsoon. The medium (zone II) and low (zone III) salinity mid and upstream portions had maximum of 67 and 39 fish species respectively. Maintenance of natural salinity regimes in estuary, among other ecological factors, is critical for its fish diversity.

Mercury exposure Aasessment in fish and humans from Sundarban Mangrove Wetland of India

Present study had documented total mercury levels in six commonly consumed fish species, and performed across-sectional study on local residents to gauge their intake of fish (via dietary survey) and mercury exposure (via hair biomarker analyses). Mean total mercury content in edible composites of locally-caught fishes (topse, hilsa, mackerel, topse, sardinella, khoira) was low and ranged from 0.01 to 0.11 mu g g(-1) mercury, dry weight. In a cross-sectional study of 58 area residents, the mercury content in hair ranged from 0.25 to 1.23 mu g g(-1), with a mean of 0.65 +/- 0.23 mu g g(-1), Flair mercury level was not influenced by gender, age, or occupation. Mean number of meals consumed per week was 3.1 +/- 1.1, and all participants consumed at least one fish meal per week. When related to fish consumption, a significant positive association was found between number of fish meals consumed per week and hair mercury levels.

Fish Inspired Biomimetic Ionic Polymer-Metal Composite Pectoral Fins Using Labriform Propulsion

In this article, we analyze and design ionic polymer metal composite (IPMC) underwater propulsors inspired from swimming of labriform fishes. The structural model of the IPMC fin accounts for the electromechanical dynamics of the bean in water. A quasi steady blade element model that accounts for unsteady phenomena, such as added mass effects, dynamic stall, and cumulativeWagner effect is used to estimate the hydrodynamic performance. Dynamic characteristics of IPMC actuated flapping fins having the same size as the actual fins of three different fish species, Gomphosus varius, Scarus frenatus, and Sthethojulis trilineata, are analyzed using numerical simulations.

Factors affecting distribution of fish within a tidally drained mangrove forest in the Andaman and Nicobar Islands, India

Mangrove forests in meso-tidal areas are completely drained during low tides, forming only temporary habitats for fish. We hypothesised that in such temporary habitats, where stranding risks are high, distance from tidal creeks that provided access to inundated areas during receding tides would be the primary determinant of fish distribution. Factors such as depth, root density and shade were hypothesised to have secondary effects. We tested these hypotheses in a tidally drained mangrove patch in the Andaman Islands, India. Using stake nets, we measured fish abundance and species richness relative to distance from creeks, root density/m(2), shade, water depth and size (total length) of fish. We also predicted that larger fish (including potential predators) would be closer to creeks, as they faced a greater chance of mortality if stranded. Thus we conducted tethering trials to examine if predation would be greater close to the creeks. Generalised linear mixed effects models showed that fish abundance was negatively influenced by increasing creek distance interacting with fish size and positively influenced by depth. Quantile regression analysis showed that species richness was limited by increasing creek distance. Proportion of predation was greatest close to the creeks (0-25 m) and declined with increasing distance. Abundance was also low very close to the creeks, suggesting that close to the creeks predation pressure may be an important determinant of fish abundance. The overall pattern however indicates that access to permanently inundated areas, may be an important determinant of fish distribution in tidally drained mangrove forests.

Caracterización técnica de los sistemas de explotación ganadera de los pequeños y medianos productores en los municipios de Tisma, Nandaime y Granada (Malacatoya)

El presente trabajo se llevó a cabo con el objetivo de realizar una caracterización de los sistemas de producción ganadera en los Municipios de Tisma, Nandaime y granada (Malacatoya.). El estudio se llevo acabo en 4 fases: Realización de la entrevista a los productores en la que se determino la disponibilidad y uso actual de los recursos en las fincas. La segunda fase consistió en la codificación de los datos obtenidos de las entrevistas asignándoles un número para su análisis por medio del programa computarizado y se creo una base de datos ordenada por municipio y de manera general. La tercera fase comprendió en el análisis estadistico de la información recopilada en las entrevistas ordenándose en programas computarizados Microsoft Word, Excel y para el análisis de los datos se utilizo un programa estadístico SPSS (paquete estadístico para ciencias sociales). La cuata fase consistió en la obtención y discusión de resultados. En cada unó de los aspectos de la entrevista se determino lo siguiente: Característica de la población animal. El 73.6% de los productores encuestados saben leer, un 70.5 %sabe escribir, en cuanto al tiempo de trabajo en la finca el 82.2% trabaja tiempo completo en la finca, en lo referente a la edad del productor el promedio es de 50 años, y el números de personas promedio que viven en la finca es de 6 personas. Característica de la finca: En cuanto a la distribución de la tierra el área total promedio en manzana es de 33.75 manzanas, y el área ganadera en promedio es de 24.36 manzana, en lo referente a la tenencia de la tierra el 53.5% de los productores encuestados poseen tierras propias, un 24.8% tienen una forma de tenencia de la tierra propia y alquilada y % restante tienen otra modalidad de tenencia. En lo referente a la infraestructura el 96.1% de los productores poseen corrales, un 66.7% tienen salitreros, un 51.9% cuentan con comederos, apenas un 10.1% poseen mangas, un 55.8% tienen pilas para abrevar su ganado y apenas un 33.3% cuentan con bodegas. Características de la población animal: En promedio de vaquillas es de 2.55, el promedio de vacas en producción es de 6.31, el promedio de vacas secas es de 3.67 y el promedio de toros es de 0.65.Esto es con respecto a las categorías tomadas en cuentas en esta variable. Hablando del tamaño general del hato en promedio es de 24.58 U.A. Manejo sanitario: Con respecto a la desparasitación del ganado en el ultimo año un 94.6% de los productores ha desparasitado. Referente a los que han vacunado en el ultimo año un 87.4% manifestó haber realizado dicha actividad. En cuanto a cuantas veces vacuna al año un 55% manifestaron hacerlo 2 veces al año, hablando de las enfermedades contra las que vacunan el 59.6 % expresaron vacunar contra ántrax y pierna negra. Manejo productivo el promedio de vacas en ordeños fue de 6.31 U.A, la producción de leche en invierno es de 4.61 Lt/v/día y la producción en verano es de 3.24 Lt/v/día, con lo que respecta a la venta de la leche un 50.39 % de los productores venden la leche al contado y en cuanto a la venta de carne un 87..6% de los productores venden al contado. Manejo reproductivo la edad en que son incorporadas las vaquillas es a los 28.13 meses, el intervalo parto-parto en promedio es de 14.67 meses y el promedio de partos por vacas es de 5.7 partos, el 94.6% de los productores utiliza semental para cubrir las hembras. Manejo alimentario con respecto al tipo de pasto suministrados al ganado un 41.8 % de los productores de dan pasto mejorados y naturales, únicamente un 10.9% de los productores le da concentrado a su ganado, el 38 % les dan suplemento al ganado y un 68.2 % de los encuestados dan rastrojo en la alimentación del ganado. Conocimiento tecnológico referente al uso de registro apenas un 32.6 % lleva registros productivos y reproductivos, con lo que respecta a la organización un 44.2 % forma parte de una organización, apenas un 15.5 % de los productores encuestados reciben financiamiento de instituciones y apenas el 30.2 % del total de productores ha recibido capacitaciones sobre el manejo del ganado.

Influences of the Fish-Mouth Project and the Groins on the Flow and Sediment Ratio of the Yangtze River Waterway

A depth-integrated two-dimensional numerical model of current, salinity and sediment transport was proposed and calibrated by the observation data in the Yangtze River Estuary. It was then applied to investigate the flow and sediment ratio of the navigati

Establecimiento de técnica de extracción de semen en gallos criollos e inseminación artificial en gallinas criollas en Nejapa - Managua

La inseminación artificial es una técnica que fue desarrollada en la década de los años treinta utilizando el método descrito por Buno\VS y Quinn (1937), consistía en practicarle masajes abdominales y en la cloaca tanto al ave macho como a la hembra Este trabajo de investigación que tiene por título: Establecimiento de técnicas de extracción de semen en gallos criollos e inseminación artificial en gallinas criollas, fue investigado con los tines de realizar la técnica inseminación artificial en gallinas criollas que no se utiliza en nuestro país, y también comprobar que esta tiene resultado positivo. En la investigación se trabajo con 10 gallinas y 2 gallos en donde se divide dos tratamientos: 1er tratamiento monta natural que se utilizaron 5 gallinas y un gallo, 2do tratamiento Inseminación artificial que se utilizaron 5 gallinas y un gallo Los cuales fueron seleccionados con Jónne parámetros establecidos En el tratamiento en la monta natural las gallinas estaban en manejo tradicional y la alimenticio ad-libitum y copulacion natural de gallo. Mientras que en 2do tratamiento para el gallo de la inseminación se le realizo un adiestramiento durante 6 meses para lograr la obtención de semen puro posteriormente inseminar a las gallinas destinadas para el 2do tratamiento. En los resultados de la variable de incubación de cada tratamiento se valoró la diferencia de los tratamiento empleados, mostrando que en el tratamiento 1 por la monta natural (T1 M.N) fue de margen inferior de 75%, donde para el tratamiento 2 de inseminación artificial (T2 LA) un margen de superioridad reflejado en 83% Se encontró un Chi­ cuadrado de 1.7562 no significativo al5% con 1 grado de libertad,-- (filas-uno)*(columnas-1) -­ entendiéndose que las diferencias observadas en el porcentaje de huevos nacidos de cada grupo de tratamiento, así como el porcentaje de huevos no nacidos de cada grupo de tratamiento están en el rango posible de diferencias atribuibles a la casualidad propias de unidades experimentales biológicas empleando un nivel de significación del 5 % También se rellejo el porcentaje de huevos incubables fue para(T1 M.N) 35% y ("12 LA) 31%, para mortalidad embrionaria se determino un 32%(T1 M.N)y el 20% para elpara(T2I.A). En elcomportamiento reproductivo se constato que para (T1 M.N) un margen de 28- 15 huevos y para (T2 LA) un margen de 24- 13 huevos. Concluyendo que la técnica de inseminación attiticial se puede realizar, y puede ser beneficiosa, pero a niveles industriales o en aves de razas debido a que los costos son significativamente costosos no siendo viable para los pequeños productores de gallinas de patio