A detailed description of an economical setup for electroporation of chick embryos in ovo

One of the challenges of the postgenomic era is characterizing the function and regulation of specific genes. For various reasons, the early chick embryo can easily be adopted as an in vivo assay of gene function and regulation. The embryos are robust, accessible, easily manipulated, and maintained in the laboratory. Genomic resources centered on vertebrate organisms increase daily. As a consequence of optimization of gene transfer protocols by electroporation, the chick embryo will probably become increasingly popular for reverse genetic analysis. The challenge of establishing chick embryonic electroporation might seem insurmountable to those who are unfamiliar with experimental embryological methods. To minimize the cost, time, and effort required to establish a chick electroporation assay method, we describe and illustrate in great detail the procedures involved in building a low-cost electroporation setup and the basic steps of electroporation

Life Cycle Assessment of Peach Nectar: a comparative analysis between conventional and bioenergy-from-waste integrated food chains

Modern food systems are characterized by a high energy intensity as well as by the production of large amounts of waste, residuals and food losses. This inefficiency presents major consequences, in terms of GHG emissions, waste disposal, and natural resource depletion. The research hypothesis is that residual biomass material could contribute to the energetic needs of food systems, if recovered as an integrated renewable energy source (RES), leading to a sensitive reduction of the impacts of food systems, primarily in terms of fossil fuel consumption and GHG emissions. In order to assess these effects, a comparative life cycle assessment (LCA) has been conducted to compare two different food systems: a fossil fuel-based system and an integrated system with the use of residual as RES for self-consumption. The food product under analysis has been the peach nectar, from cultivation to end-of-life. The aim of this LCA is twofold. On one hand, it allows an evaluation of the energy inefficiencies related to agro-food waste. On the other hand, it illustrates how the integration of bioenergy into food systems could effectively contribute to reduce this inefficiency. Data about inputs and waste generated has been collected mainly through literature review and databases. Energy balance, GHG emissions (Global Warming Potential) and waste generation have been analyzed in order to identify the relative requirements and contribution of the different segments. An evaluation of the energy “loss” through the different categories of waste allowed to provide details about the consequences associated with its management and/or disposal. Results should provide an insight of the impacts associated with inefficiencies within food systems. The comparison provides a measure of the potential reuse of wasted biomass and the amount of energy recoverable, that could represent a first step for the formulation of specific policies on the integration of bioenergies for self-consumption.

Optimization of bioenergy solutions at different farm scales

RAF is a bio-energetic descriptive model integrates with MAD model to support Integrated Farm Management. RAF model aimed to enhancing economical, social and environmental sustainability of farm production in terms of energy via convert energy crops and animal manure to biogas and digestate (bio-fertilizers) by anaerobic digestion technologies, growing and breeding practices. The user defines farm structure in terms of present crops, livestock and market prices and RAF model investigates the possibilities of establish on-farm biogas system (different anaerobic digestion technologies proposed for different scales of farms in terms of energy requirements) according to budget and sustainability constraints to reduce the dependence on fossil fuels. The objective function of RAF (Z) is optimizing the total net income of farm (maximizing income and minimizing costs) for whole period which is considered by the analysis. The main results of this study refers to the possibility of enhancing the exploitation of the available Italian potentials of biogas production from on-farm production of energy crops and livestock manure feedstock by using the developed mathematical model RAF integrates with MAD to presents reliable reconcile between farm size, farm structure and on-farm biogas systems technologies applied to support selection, applying and operating of appropriate biogas technology at any farm under Italian conditions.

Supernova neutrinos in AMANDA and IceCube - Monte Carlo development and data analysis

Supernovae are among the most energetic events occurring in the universe and are so far the only verified extrasolar source of neutrinos. As the explosion mechanism is still not well understood, recording a burst of neutrinos from such a stellar explosion would be an important benchmark for particle physics as well as for the core collapse models. The neutrino telescope IceCube is located at the Geographic South Pole and monitors the antarctic glacier for Cherenkov photons. Even though it was conceived for the detection of high energy neutrinos, it is capable of identifying a burst of low energy neutrinos ejected from a supernova in the Milky Way by exploiting the low photomultiplier noise in the antarctic ice and extracting a collective rate increase. A signal Monte Carlo specifically developed for water Cherenkov telescopes is presented. With its help, we will investigate how well IceCube can distinguish between core collapse models and oscillation scenarios. In the second part, nine years of data taken with the IceCube precursor AMANDA will be analyzed. Intensive data cleaning methods will be presented along with a background simulation. From the result, an upper limit on the expected occurrence of supernovae within the Milky Way will be determined.

Ab initio quantum mechanical investigation of structural and chemical-physical properties of selected minerals for minero-petrological, structural ceramic and biomaterial applications

The purpose of this thesis is the atomic-scale simulation of the crystal-chemical and physical (phonon, energetic) properties of some strategically important minerals for structural ceramics, biomedical and petrological applications. These properties affect the thermodynamic stability and rule the mineral-environment interface phenomena, with important economical, (bio)technological, petrological and environmental implications. The minerals of interest belong to the family of phyllosilicates (talc, pyrophyllite and muscovite) and apatite (OHAp), chosen for their importance in industrial and biomedical applications (structural ceramics) and petrophysics. In this thesis work we have applicated quantum mechanics methods, formulas and knowledge to the resolution of mineralogical problems ("Quantum Mineralogy”). The chosen theoretical approach is the Density Functional Theory (DFT), along with periodic boundary conditions to limit the portion of the mineral in analysis to the crystallographic cell and the hybrid functional B3LYP. The crystalline orbitals were simulated by linear combination of Gaussian functions (GTO). The dispersive forces, which are important for the structural determination of phyllosilicates and not properly con-sidered in pure DFT method, have been included by means of a semi-empirical correction. The phonon and the mechanical properties were also calculated. The equation of state, both in athermal conditions and in a wide temperature range, has been obtained by means of variations in the volume of the cell and quasi-harmonic approximation. Some thermo-chemical properties of the minerals (isochoric and isobaric thermal capacity) were calculated, because of their considerable applicative importance. For the first time three-dimensional charts related to these properties at different pressures and temperatures were provided. The hydroxylapatite has been studied from the standpoint of structural and phonon properties for its biotechnological role. In fact, biological apatite represents the inorganic phase of vertebrate hard tissues. Numerous carbonated (hydroxyl)apatite structures were modelled by QM to cover the broadest spectrum of possible biological structural variations to fulfil bioceramics applications.

Search for Dark Matter in events with a highly energetic jet and missing transverse momentum in proton-proton collisions at root out s = 8 TeV with the ATLAS detector

The experiments at the Large Hadron Collider at the European Centre for Particle Physics, CERN, rely on efficient and reliable trigger systems for singling out interesting events. This thesis documents two online timing monitoring tools for the central trigger of the ATLAS experiment as well as the adaption of the central trigger simulation as part of the upgrade for the second LHC run. Moreover, a search for candidates for so-called Dark Matter, for which there is ample cosmological evidence, is presented. This search for generic weakly interacting massive particles (WIMPs) is based on the roughly 20/fb of proton-proton collisions at a centre-of-mass-energy of sqrt{s}=8 TeV recorded with the ATLAS detector in 2012. The considered signature are events with a highly energetic jet and large missing transverse energy. No significant deviation from the theory prediction is observed. Exclusion limits are derived on parameters of different signal models and compared to the results of other experiments. Finally, the results of a simulation study on the potential of the analysis at sqrt{s}=14 TeV are presented.

HELIOSPHERIC ENERGETIC NEUTRAL HYDROGEN MEASURED WITH ASPERA-3 AND ASPERA-4

We re-analyze the signal of non-planetary energetic neutral atoms (ENAs) in the 0.4-5.0 keV range measured with the Neutral Particle Detector (NPD) of the ASPERA-3 and ASPERA-4 experiments on board the Mars and Venus Express satellites. Due to improved knowledge of sensor characteristics and exclusion of data sets affected by instrument effects, the typical intensity of the ENA signal obtained by ASPERA-3 is an order of magnitude lower than in earlier reports. The ENA intensities measured with ASPERA-3 and ASPERA-4 now agree with each other. In the present analysis, we also correct the ENA signal for Compton-Getting and for ionization loss processes under the assumption of a heliospheric origin. We find spectral shapes and intensities consistent with those measured by the Interstellar Boundary Explorer (IBEX). The principal advantage of ASPERA with respect to the IBEX sensors is the two times better spectral resolution. In this study, we discuss the physical significance of the spectral shapes and their potential variation across the sky. At present, these observations are the only independent test of the heliospheric ENA signal measured with IBEX in this energy range. The ASPERA measurements also allow us to check for a temporal variation of the heliospheric signal as they were obtained between 2003 and 2007, whereas IBEX has been operational since the end of 2008.

Lunar energetic neutral atom (ENA) spectra measured by the interstellar boundary explorer (IBEX)

The solar wind continuously flows out from the Sun, filling interplanetary space and directly interacting with the surfaces of small planetary bodies and other objects throughout the solar system. A significant fraction of these ions backscatter from the surface as energetic neutral atoms (ENAs). The first observations of these ENA emissions from the Moon were recently reported from the Interstellar Boundary Explorer (IBEX). These observations yielded a lunar ENA albedo of ˜10% and showed that the Moon reflects ˜150 metric tons of neutral hydrogen per year. More recently, a survey of the first 2.5 years of IBEX observations of lunar ENAs was conducted for times when the Moon was in the solar wind. Here, we present the first IBEX ENA observations when the Moon is inside the terrestrial magnetosheath and compare them with observations when the Moon is in the solar wind. Our analysis shows that: (1) the ENA intensities are on average higher when the Moon is in the magnetosheath, (2) the energy spectra are similar above ~0.6* solar wind energy but below there are large differences of the order of a factor of 10, (3) the energy spectra resemble a power law with a "hump" at ˜0.6 * solar wind energy, and (4) this "hump" is broader when the Moon is in the magnetosheath. We explore potential scenarios to explain the differences, namely the effects of the topography of the lunar surface and the consequences of a very different Mach number in the solar wind versus in the magnetosheath.

Separation of the Ribbon from globally distributed energetic neutral Atom Flux using the first five Years of Ibex Observations

The Interstellar Boundary Explorer (IBEX) observes the IBEX ribbon, which stretches across much of the sky observed in energetic neutral atoms (ENAs). The ribbon covers a narrow (~20°-50°) region that is believed to be roughly perpendicular to the interstellar magnetic field. Superimposed on the IBEX ribbon is the globally distributed flux that is controlled by the processes and properties of the heliosheath. This is a second study that utilizes a previously developed technique to separate ENA emissions in the ribbon from the globally distributed flux. A transparency mask is applied over the ribbon and regions of high emissions. We then solve for the globally distributed flux using an interpolation scheme. Previously, ribbon separation techniques were applied to the first year of IBEX-Hi data at and above 0.71 keV. Here we extend the separation analysis down to 0.2 keV and to five years of IBEX data enabling first maps of the ribbon and the globally distributed flux across the full sky of ENA emissions. Our analysis shows the broadening of the ribbon peak at energies below 0.71 keV and demonstrates the apparent deformation of the ribbon in the nose and heliotail. We show global asymmetries of the heliosheath, including both deflection of the heliotail and differing widths of the lobes, in context of the direction, draping, and compression of the heliospheric magnetic field. We discuss implications of the ribbon maps for the wide array of concepts that attempt to explain the ribbon's origin. Thus, we present the five-year separation of the IBEX ribbon from the globally distributed flux in preparation for a formal IBEX data release of ribbon and globally distributed flux maps to the heliophysics community.

Backscattered energetic neutral atoms from the Moon in the Earth's plasma sheet observed by Chandarayaan-1/Sub-keV Atom Reflecting Analyzer instrument

We present the observations of energetic neutral atoms (ENAs) produced at the lunar surface in the Earth's magnetotail. When the Moon was located in the terrestrial plasma sheet, Chandrayaan-1 Energetic Neutrals Analyzer (CENA) detected hydrogen ENAs from the Moon. Analysis of the data from CENA together with the Solar Wind Monitor (SWIM) onboard Chandrayaan-1 reveals the characteristic energy of the observed ENA energy spectrum (the e-folding energy of the distribution function) ∼100 eV and the ENA backscattering ratio (defined as the ratio of upward ENA flux to downward proton flux) <∼0.1. These characteristics are similar to those of the backscattered ENAs in the solar wind, suggesting that CENA detected plasma sheet particles backscattered as ENAs from the lunar surface. The observed ENA backscattering ratio in the plasma sheet exhibits no significant difference in the Southern Hemisphere, where a large and strong magnetized region exists, compared with that in the Northern Hemisphere. This is contrary to the CENA observations in the solar wind, when the backscattering ratio drops by ∼50% in the Southern Hemisphere. Our analysis and test particle simulations suggest that magnetic shielding of the lunar surface in the plasma sheet is less effective than in the solar wind due to the broad velocity distributions of the plasma sheet protons.

Organic-walled dinoflagellate cysts analysis and statistical analysis of 116 surface sediment samples from the eastern Indian Ocean

Assemblages of organic-walled dinoflagellate cysts (dinocysts) from 116 marine surface samples have been analysed to assess the relationship between the spatial distribution of dinocysts and modern local environmental conditions [e.g. sea surface temperature (SST), sea surface salinity (SSS), productivity] in the eastern Indian Ocean. Results from the percentage analysis and statistical methods such as multivariate ordination analysis and end-member modelling, indicate the existence of three distinct environmental and oceanographic regions in the study area. Region 1 is located in western and eastern Indonesia and controlled by high SSTs and a low nutrient content of the surface waters. The Indonesian Throughflow (ITF) region (Region 2) is dominated by heterotrophic dinocyst species reflecting the region's high productivity. Region 3 is encompassing the area offshore north-west and west Australia which is characterised by the water masses of the Leeuwin Current, a saline and nutrient depleted southward current featuring energetic eddies.

FISH analysis of biofilm samples from five CANON reactors in Beijing

Completely autotrophic nitrogen removal over nitrite (CANON) has been regarded as an efficient and economical process for nitrogen removal from wastewater. The distribution and genetic diversity of the functional microorganisms in five lab-scale CANON reactors have been investigated by using some molecular biology methods. Nitrosomonas-like aerobic ammonium oxidizing bacteria (AerAOB) and Candidatus Brocadia-related anaerobic ammonium oxidizing bacteria (AnAOB) were detected as predominant functional microbes in the five reactors while Nitrobacter-like nitrite oxidizing bacteria (NOB) existed only in the systems operated at ambient temperature. Communities of AerAOB and AnAOB were almost similar among the five reactors while the distribution of the functional microbes was either scattered or densely packed. Meanwhile, this study has demonstrated the feasibility of starting up CANON by inoculating conventional activated sludge in low ammonium content at ambient temperature.

Stability analysis of dam failures. Application to aurul tailing pond in Baia Mare (Romania)

La gestión de estériles de una explotación minera es un punto clave en el desarrollo económico de una actividad extractiva, y en especial, del entorno natural y social en el que se emplaza dicho proyecto. La minería de metales preciosos lleva asociada la construcción de balsas de residuos muy peligrosos, fruto de su proceso extractivo, como por ejemplo la cianuración en el caso del oro. Para un correcto funcionamiento de dichos emplazamientos es necesario escoger correctamente el método constructivo a partir de estudios de reconocimiento previos, como estudios de estabilidad geotécnica, contexto geológico de la zona, sismicidad, hidrología, etc. Así mismo, han de llevarse a cabo unas exhaustivas medidas de control y vigilancia para asegurar las condiciones de seguridad exigidas. La ruptura de la balsa de decantación de Aurul S.A. en Baia Mare (Rumania) el 30 de Enero del año 2000 ha sido escogido como caso de estudio de estabilidad de diques. ABSTRACT Tailing's management of a mining exploitation is a key point in the economical development of the extractive activity and, especially, of the natural and social environment of the site. Precious metals mining has high hazardous embankment construction associated, product of its extractive process, i.e. gold cyanidation. A correct operation of those sites makes necessary to choose a suitable construction method, based on previous studies as geotechnical stability studies, geological context of the area, seismicity, hydrology, etc. At the same time, exhaustive control and monitoring must be carried out in order to assure the required safety conditions. Aurul's decantation pond failure in Baia Mare (Romania), on 30th January 2000, has been chosen as a stability analysis case-study.

An Analysis Of The Recommended Knowledge For The Software Project Management Discipline

According to the PMBOK (Project Management Body of Knowledge), project management is “the application of knowledge, skills, tools, and techniques to project activities to meet the project requirements” [1]. Project Management has proven to be one of the most important disciplines at the moment of determining the success of any project [2][3][4]. Given that many of the activities covered by this discipline can be said that are “horizontal” for any kind of domain, the importance of acknowledge the concepts and practices becomes even more obvious. The specific case of the projects that fall in the domain of Software Engineering are not the exception about the great influence of Project Management for their success. The critical role that this discipline plays in the industry has come to numbers. A report by McKinsey & Co [4] shows that the establishment of programs for the teaching of critical skills of project management can improve the performance of the project in time and costs. As an example of the above, the reports exposes: “One defense organization used these programs to train several waves of project managers and leaders who together administered a portfolio of more than 1,000 capital projects ranging in Project management size from $100,000 to $500 million. Managers who successfully completed the training were able to cut costs on most projects by between 20 and 35 percent. Over time, the organization expects savings of about 15 percent of its entire baseline spending”. In a white paper by the PMI (Project Management Institute) about the value of project management [5], it is stated that: “Leading organizations across sectors and geographic borders have been steadily embracing project management as a way to control spending and improve project results”. According to the research made by the PMI for the paper, after the economical crisis “Executives discovered that adhering to project management methods and strategies reduced risks, cut costs and improved success rates—all vital to surviving the economic crisis”. In every elite company, a proper execution of the project management discipline has become a must. Several members of the software industry have putted effort into achieving ways of assuring high quality results from projects; many standards, best practices, methodologies and other resources have been produced by experts from different fields of expertise. In the industry and the academic community, there is a continuous research on how to teach better software engineering together with project management [4][6]. For the general practices of Project Management the PMI produced a guide of the required knowledge that any project manager should have in their toolbox to lead any kind of project, this guide is called the PMBOK. On the side of best practices 10 and required knowledge for the Software Engineering discipline, the IEEE (Institute of Electrical and Electronics Engineers) developed the SWEBOK (Software Engineering Body of Knowledge) in collaboration with software industry experts and academic researchers, introducing into the guide many of the needed knowledge for a 5-year expertise software engineer [7]. The SWEBOK also covers management from the perspective of a software project. This thesis is developed to provide guidance to practitioners and members of the academic community about project management applied to software engineering. The way used in this thesis to get useful information for practitioners is to take an industry-approved guide for software engineering professionals such as the SWEBOK, and compare the content to what is found in the PMBOK. After comparing the contents of the SWEBOK and the PMBOK, what is found missing in the SWEBOK is used to give recommendations on how to enrich project management skills for a software engineering professional. Recommendations for members of the academic community on the other hand, are given taking into account the GSwE2009 (Graduated Software Engineering 2009) standard [8]. GSwE2009 is often used as a main reference for software engineering master programs [9]. The standard is mostly based on the content of the SWEBOK, plus some contents that are considered to reinforce the education of software engineering. Given the similarities between the SWEBOK and the GSwE2009, the results of comparing SWEBOK and PMBOK are also considered valid to enrich what the GSwE2009 proposes. So in the end the recommendations for practitioners end up being also useful for the academic community and their strategies to teach project management in the context of software engineering.

Vibro-acoustic analysis of spacecraft structures with thin air layers

Esta Tesis presenta un estudio sobre el comportamiento vibroacústico de estructuras espaciales que incluyen capas de aire delgadas, así como sobre su modelización numérica. Las capas de aire pueden constituir un elemento fundamental en estos sistemas, como paneles solares plegados, que se consideran el caso de estudio en este trabajo. Para evaluar la influencia de las capas de aire en la respuesta dinámica del sistema se presenta el uso de modelos unidimensionales. La modelización de estos sistemas se estudia para los rangos de baja y alta frecuencia. En el rango de baja frecuencia se propone un conjunto de estrategias de simulación basadas en técnicas numéricas que se utilizan habitualmente en la industria aeroespacial para facilitar la aplicación de los resultados de la Tesis en los modelos numéricos actuales. Los resultados muestran el importante papel de las capas de aire en la respuesta del sistema. El uso de modelos basados en elementos finitos o de contorno para estos elementos proporciona resultados equivalentes aunque la aplicabilidad de estos últimos puede estar condicionada por la geometría del problema. Se estudia asimismo el uso del Análisis Estadístico de la Energía (SEA) para estos elementos. Una de las estrategias de simulación propuestas, que incluye una formulación energética para el aire que rodea a la estructura, se propone como estimador preliminar de la respuesta del sistema y sus frecuencias propias. Para el rango de alta frecuencia, se estudia la influencia de la definición del propio modelo SEA. Se presenta el uso de técnicas de reducción para determinar una matriz de pérdidas SEA reducida para definiciones incompletas del sistema (si algún elemento que interactúa con el resto no se incluye en el modelo). Esta nueva matriz tiene en cuenta la contribución de las subestructuras que no se consideran parte del modelo y que suelen ignorarse en el procedimiento habitual para reducir el tamaño del mismo. Esta matriz permite también analizar sistemas que incluyen algún componente con problemas de accesibilidad para medir su respuesta. Respecto a la determinación de los factores de pérdidas del sistema, se presenta una metodología que permite abordar casos en los que el método usual, el Método de Inyección de Potencia (PIM), no puede usarse. Se presenta un conjunto de métodos basados en la técnicas de optimización y de actualización de modelos para casos en los que no se puede medir la respuesta de todos los elementos del sistema y también para casos en los que no todos los elementos pueden ser excitados, abarcando un conjunto de casos más amplio que el abordable con el PIM. Para ambos rangos de frecuencia se presentan diferentes casos de análisis: modelos numéricos para validar los métodos propuestos y un panel solar plegado como caso experimental que pone de manifiesto la aplicación práctica de los métodos presentados en la Tesis. ABSTRACT This Thesis presents an study on the vibro-acoustic behaviour of spacecraft structures with thin air layers and their numerical modelling. The air layers can play a key role in these systems as solar wings in folded configuration that constitute the study case for this Thesis. A method based on one-dimensional models is presented to assess the influence of the air layers in the dynamic response of the system. The modelling of such systems is studied for low and high frequency ranges. In the low frequency range a set of modelling strategies are proposed based on numerical techniques used in the industry to facilitate the application of the results in the current numerical models. Results show the active role of the air layers in the system response and their great level of influence. The modelling of these elements by means of Finite Elements (FE) and Boundary Elements (BE) provide equivalent results although the applicability of BE models can be conditioned by the geometry of the problem. The use of Statistical Energy Analysis (SEA) for these systems is also presented. Good results on the system response are found for models involving SEA beyond the usual applicability limit. A simulation strategy, involving energetic formulation for the surrounding fluid is proposed as fast preliminary approach for the system response and the coupled eigenfrequencies. For the high frequency range, the influence of the definition of the SEA model is presented. Reduction techniques are used to determine a Reduced SEA Loss Matrix if the system definition is not complete and some elements, which interact with the rest, are not included. This new matrix takes into account the contribution of the subsystems not considered that are neglected in the usual approach for decreasing the size of the model. It also allows the analysis of systems with accessibility restrictions on some element in order to measure its response. Regarding the determination of the loss factors of a system, a methodology is presented for cases in which the usual Power Injection Method (PIM) can not be applied. A set of methods are presented for cases in which not all the subsystem responses can be measured or not all the subsystems can be excited, as solar wings in folded configuration. These methods, based on error minimising and model updating techniques can be used to calculate the system loss factors in a set of cases wider than the PIM’s. For both frequency ranges, different test problems are analysed: Numerical models are studied to validate the methods proposed; an experimental case consisting in an actual solar wing is studied on both frequency ranges to highlight the industrial application of the new methods presented in the Thesis.