The caspase-3-p120-RasGAP module generates a NF-κB repressor in response to cellular stress.

The nuclear factor κB (NF-κB) transcription factor is a master regulator of inflammation. Short-term NF-κB activation is generally beneficial. However, sustained NF-κB might be detrimental, directly causing apoptosis of cells or leading to a persistent damaging inflammatory response. NF-κB activity in stressed cells needs therefore to be controlled for homeostasis maintenance. In mildly stressed cells, caspase-3 cleaves p120 RasGAP, also known as RASA1, into an N-terminal fragment, which we call fragment N. We show here that this fragment is a potent NF-κB inhibitor. Fragment N decreases the transcriptional activity of NF-κB by promoting its export from the nucleus. Cells unable to generate fragment N displayed increased NF-κB activation upon stress. Knock-in mice expressing an uncleavable p120 RasGAP mutant showed exaggerated NF-κB activation when their epidermis was treated with anthralin, a drug used for the treatment of psoriasis. Our study provides biochemical and genetic evidence of the importance of the caspase-3-p120-RasGAP stress-sensing module in the control of stress-induced NF-κB activation.

The activity of the anti-apoptotic fragment generated by the caspase-3/p120 RasGAP stress-sensing module displays strict Akt isoform specificity.

The caspase-3/p120 RasGAP module acts as a stress sensor that promotes pro-survival or pro-death signaling depending on the intensity and the duration of the stressful stimuli. Partial cleavage of p120 RasGAP generates a fragment, called fragment N, which protects stressed cells by activating Akt signaling. Akt family members regulate many cellular processes including proliferation, inhibition of apoptosis and metabolism. These cellular processes are regulated by three distinct Akt isoforms: Akt1, Akt2 and Akt3. However, which of these isoforms are required for fragment N mediated protection have not been defined. In this study, we investigated the individual contribution of each isoform in fragment N-mediated cell protection against Fas ligand induced cell death. To this end, DLD1 and HCT116 isogenic cell lines lacking specific Akt isoforms were used. It was found that fragment N could activate Akt1 and Akt2 but that only the former could mediate the protective activity of the RasGAP-derived fragment. Even overexpression of Akt2 or Akt3 could not rescue the inability of fragment N to protect cells lacking Akt1. These results demonstrate a strict Akt isoform requirement for the anti-apoptotic activity of fragment N.

PeerHood as UMSIC middleware module

The UMSIC project will produce an application for social inclusion of children. This application will run on Nokia N810 internet tablet. PeerHood is an implementation of Peer-to-Peer neighborhood and communication concept, it is going to be used as a part of middleware in the project. PeerHood is responsible for providing neighboring information and connections to nearby devices. This thesis will present the requirements that the project sets to PeerHood including the general state of the art middleware requirements and the requirements set by the target device. These requirements will not be analyzed further. One main focus of this thesis is to analyze PeerHood from the UMSIC project point of view. In this thesis the results of PeerHood analysis are presented, including memory consumption testing, performance testing and testing of networking components of PeerHood. As a result of these tests modifications for PeerHood are introduced. The modifications are related to PeerHood usage in real mobile environment. Based on these requirements a framework was implemented that, when used properly, will enhance the context awareness of PeerHood, especially in mobile devices. The techniques used in framework are presented and instructions about how to use the framework are given. The approaches used in the implemented framework are analysed in this thesis. As an outcome of this thesis the context awareness of PeerHood is improved. As an additional outcome the guidelines for future development of PeerHood are introduced that are based on the results of the analysis of both PeerHood and the implemented framework.

Improving the efficiency of PV low-power processing circuits by selecting an optimal inductor current of the DC/DC converter

In the context of autonomous sensors powered by small-size photovoltaic (PV) panels, this work analyses how the efficiency of DC/DC-converter-based power processing circuits can be improved by an appropriate selection of the inductor current that transfers the energy from the PV panel to a storage unit. Each component of power losses (fixed, conduction and switching losses) involved in the DC/DC converter specifically depends on the average inductor current so that there is an optimal value of this current that causes minimal losses and, hence, maximum efficiency. Such an idea has been tested experimentally using two commercial DC/DC converters whose average inductor current is adjustable. Experimental results show that the efficiency can be improved up to 12% by selecting an optimal value of that current, which is around 300-350 mA for such DC/DC converters.

Solid phase extraction of iron and lead in environmental matrices on amberlite xad-1180/pv

A solid phase extraction procedure using Amberlite XAD-1180/Pyrocatechol violet (PV) chelating resin for the determination of iron and lead ions in various environmental samples was established. The procedure is based on the sorption of lead(II) and iron(III) ions onto the resin at pH 9, followed by elution with 1 mol/L HNO3 and determination by flame atomic absorption spectrometry. The influence of alkaline, earth alkaline and some transition metals, as interferents, are discussed. The recoveries for the spiked analytes were greater than 95%. The detection limits for lead and iron by FAAS were 0.37 µg/L and 0.20 µg/L, respectively. Validation of the method described here was performed by using three certified reference materials (SRM 1515 Apple Leaves, SRM 2711 Montana Soil and NRCC-SLRS-4 Riverine Water). The procedure was successfully applied to natural waters and human hair.

Identificação de xanthomonas axonopodis pv. phaseoli e x. axonopodis pv. phaseoli var. fuscans através da técnica de pcr

Este trabalho teve por objetivo verificar a viabilidade de utilização da técnica de PCR, usando primers considerados específicos, para identificação de Xanthomonas axonopodis pv. phaseoli (Xap) e x. axonopodis pv. phaseoli var. fuscans (Xapf), visando criar bases para sua utilização em diagnose rotineira e em programas de certificação de sementes. Foram incluídos no estudo 42 isolados da bactéria provenientes de locais distintos, além de outros gêneros, espécies e patovares, para ser verificada a especificidade dos primers. Os resultados obtidos permitem concluir que os primers utilizados são adequados para identificação de Xap e Xapf, embora dois isolados patogênicos não tenham sido amplificados. Foi observada também a amplificação de uma banda fraca para X. axonopodis pv. vitians, com o mesmo número de pares de bases, o que sugere existir homologia entre estes patovares, na região amplificada.

Termoterapia via calor seco no tratamento de sementes de tomate: eficiência na erradicação de Xanthomonas campestris pv. vesicatoria e efeitos sobre a semente

Sementes infetadas constituem fonte primária de inóculo para epidemias da mancha bacteriana do tomate (Lycopersicon esculentum)que sob condições favoráveis podem resultar em rápido desenvolvimento da doença e severas perdas. O presente trabalho objetivou avaliar a eficiência do tratamento térmico a 70 ºC por 96 h na erradicação de Xanthomonas campestris pv. vesicatoria de sementes de tomate e seu efeito sobre a qualidade fisiológica e estrutura das sementes, por meio de microscopia eletrônica de varredura (MEV). Realizaram-se dois ensaios, e utilizando-se sementes inoculadas pelo método a vácuo com o isolado ENA 4463 a 10(7) ufc/ml em NaCl (0,85%). No primeiro ensaio compararam-se quatro tratamentos: sementes inoculadas (1), sementes inoculadas e tratadas a 70 ºC/96 h em estufa com circulação forçada de ar (2), sementes não inoculadas e não tratadas (3) e sementes não inoculadas e tratadas (70 ºC/96 h) (4). No segundo ensaio, apenas os tratamentos (1), (2) e (3) foram comparados. As amostras foram avaliadas quanto à qualidade fisiológica e recuperação da fitobactéria por meio de extração a vácuo seguido de riscagem em meios semi-seletivos, além de observações em MEV. Constatou-se eficiência de 100% e 99,96% na erradicação da bactéria no primeiro e segundo ensaio, respectivamente. Não houve nenhum efeito do tratamento térmico sobre a germinação. Observações ao MEV, revelaram alterações na estrutura superficial das sementes, com remoção, quebra e fusão de tricomas, além de danos à integridade das células bacterianas associadas à superfície do tegumento.

Genetic linkage map of Phaseolus vulgaris and identification of QTLs responsible for resistance to Xanthomonas axonopodis pv. phaseoli

Common bean (Phaseolus vulgaris) cultivars with a high degree of resistance to Xanthomonas axonopodis pv. phaseoli (Xap) are not available in Brazil. Despite many studies, a low degree of resistance to Xap continues to exist due to its complex genetic inheritance, which is not well known. The objectives of this research were to complement a common bean genetic map based on the cross between a susceptible genotype 'HAB-52' and a resistant genotype 'BAC-6', and to map and analyze genomic regions (quantitative trait loci – QTLs) related to Xap resistance. Eleven linkage groups were determined using 143 RAPD markers, covering 1,234.5 cM of the genome. This map was used to detect QTLs associated with Xap resistance on leaves and pods. The averages of disease severity on leaves (represented by the transformed disease index – TDI) and pods (represented by the diameter of lesion on pods – DLP) were added to the data of the linkage map. Five TDI QTLs and only one LDP QTL were detected. The TDI QTLs were placed in the A, B, G and J linkage groups, with phenotypic variations ranging from 12.7 to 71.6%. The DLP QTL explained 12.9% of the phenotypic variation and was mapped in a distinct linkage group. These results indicate that there are different genes involved in the control of resistance on leaves and pods.

Componentes da resistência à mancha-bacteriana e crescimento de Xanthomonas campestris pv. vesicatoria, raça T2, em genótipos de tomateiro

Componentes da resistência e crescimento da população bacteriana de Xanthomonas campestris pv. vesicatoria (Xcv), raça T2, foram quantificados em genótipos de tomateiro (Lycopersicon esculentum) resistentes ('Ohio 8245', 'Agrocica 30' e 'Hawaii 7998') e suscetíveis ('CNPH 401-08'e 'CNPH 416.81.01.02'). A população bacteriana de Xcv evoluiu diferentemente em genótipos resistentes e suscetíveis, atingindo valor até 100 vezes maior no genótipo suscetível 'CNPH 401-08', sete dias após a inoculação. Os componentes de resistência avaliados foram tamanho de lesão, número de lesões, área lesionada e período latente. Os genótipos resistentes e suscetíveis diferiram estatisticamente entre si para todos os componentes avaliados, exceto para o diâmetro da lesão, onde somente o genótipo 'CNPH 416.81.01.02' diferiu dos genótipos resistentes. O período latente foi significativamente diferente em genótipos resistentes e suscetíveis no campo, casa de vegetação e câmara de crescimento, e variou entre seis e 11 dias. Tamanho de lesão não foi um bom indicador para separar genótipos quanto à resistência, por ser um caráter bastante influenciado pelo ambiente. O número de lesões e o período latente apresentaram-se como caracteres fáceis e rápidos de serem avaliados; estes componentes explicam, em grande parte, a resistência observada nos genótipos avaliados pelo sistema de notas.

Molecular characterization of Brazilian strains of Xanthomonas campestris pv. viticola by rep-PCR fingerprinting

Bacterial canker of grapevine (Vitis vinifera), caused by Xanthomonas campestris pv. viticola was first detected in Brazil in 1998, affecting grapevines in the São Francisco river basin, state of Pernambuco. The disease was also reported in Juazeiro, Bahia and later in Piauí and Ceará. Due to its limited geographical distribution and relatively recent detection in Brazil, very little is known about the pathogen's biology and diversity. Repetitive DNA based-PCR (rep-PCR) profiles were generated from purified bacterial DNA of 40 field strains of X. campestris pv. viticola, collected between 1998 and 2001 in the states of Pernambuco, Bahia and Piauí. Combined analysis of the PCR patterns obtained with primers REP, ERIC and BOX, showed a high degree of similarity among Brazilian strains and the Indian type strain NCPPB 2475. Similar genomic patterns with several diagnostic bands, present in all strains, could be detected. Fingerprints were distinct from those of strains representing other pathovars and from a yellow non-pathogenic isolate from grape leaves. The polymorphism observed among the Brazilian strains allowed their separation into five subgroups, although with no correlation with cultivar of origin, geographic location or year collected.

Transformation of Xanthomonas axonopodis pv. citri by electroporation

This study describes the use of electroporation for transforming Xanthomonas axonopodis pv. citri (Xac), the causal agent of citrus (Citrus spp.) canker. It also evaluates the methodology used for this species under different electrical parameters. The bacterium used in the study (Xac 306) was the same strain used for recent complete sequencing of the organism. The use of a plasmid (pUFR047, gentamycin r) is reported here to be able to replicate in cells of Xac. Following the preparation and resuspension of competent cells of Xac at a density of ~4 x 10(10) cfu/ml, in 10% glycerol, and the addition of the replicative plasmid, an electrical pulse was applied to each treatment. Selection of transformants showed a high efficiency of transformation (1.1 x 10(6) transformants/mug DNA), which indicates an effective, and inverse, combination between electrical resistance (50 W) and capacitance (50 µF) for this species, with an electrical field strength of 12.5 kV.cm-1 and 2.7-ms pulse duration. Besides the description of a method for electroporation of Xac 306, this study provides additional information for the use of the technique on studies for production of mutants of this species.