Enhanced performance of an all-optical parity checker using a single Mach-Zehnder interferometer

An all-optical parity checker is proposed that requires only a single Mach-Zehnder interferometer. Simulation results demonstrate an 8dB improvement in extinction ratio at 10 Gb/s operation. © 1999 Optical Society of America.

Demographic assessment of the blue crab (Callinectes sapidus) in Chesapeake Bay using extractable lipofuscins as age markers

The blue crab (Callinectes sapidus) plays an important economic and ecological role in estuaries and coastal habitats from the Gulf of Mexico to the east coast of North America, but demographic assessments are limited by length-based methods. We applied an alternative aging method using biochemical measures of metabolic byproducts (lipofuscins) sequestered in the neural tissue of eyestalks to examine population age structure. From Chesapeake Bay, subsamples of animals collected from the 1998–99 (n=769) and 1999–2000 (n=367) winter dredge surveys were collected and lipofuscin was measured. Modal analysis of the lipofuscin index provided separation into three modes, whereas carapace-width data collected among the same individuals showed two broad modes. Lipofuscin modal analysis indicated that most adults (carapace width >120 mm) were <2 years old. The results indicate that use of extractable lipofuscin can provide a more accurate and better resolved estimation of demographic structure of blue crab populations in the field than size alone.

Allozyme and RAPD variation in the eastern Pacific yellowfin tuna (Thunnus albacares)

Stock structure of eastern Pacific yellowfin tuna was investigated by analyzing allozymes and random amplified polymorphic DNAs (RAPDs) from 10 samples of 20–30 individuals each, collected between 1994 and 1996 from fishing vessels operating in the Inter-American Tropical Tuna Commission (IATTC) yellowfin regulatory area (CYRA). Allozyme analysis resolved 28 loci, eight of which were polymorphic under the 0.95 criterion: Aat-S*, Glud, Gpi-F*, Gpi-S*, La, Lgg, Pap-F*, and 6-Pgd, resulting in a mean heterozygosity over all allozyme loci of H = 0.052. Four polymorphic RAPD loci were selected for analysis, resulting in a mean heterozygosity of H = 0.43. Eight of 45 pairwise comparisons of allozyme allele frequencies among the ten samples showed significant differences after correction for multiple testing (P<0.0001), all of which involved comparisons with the Gulf of California sample. Confirmation of this signal of population structure would have management implications. No significant divergence in RAPD allele frequencies was observed among samples. Weir and Cockerham θ estimated for allozyme loci (θ=0.048; P<0.05) and RAPD loci (θ=0.030; P>0.05) revealed little population structure among samples. Mantel tests demonstrated that the genetic relationships among samples did not correspond to an isolation-by-distance model for either class of marker. Four of eight comparisons of coastal and offshore samples revealed differences of allele frequencies at the Gpi-F* locus (P<0.05), although none of these differences was significant after correction for multiple testing (P>0.001). Results are consistent with the hypothesis that the CYRA yellowfin tuna samples comprise a single genetic stock, although gene flow appears to be greater among coastal samples than between coastal and offshore samples.

植物14-3-3基因家族的进化和功能分析

14-3-3蛋白家族结构非常保守，被认为广泛存在于所有真核生物的各组织器官中。已有研究表明，14-3-3蛋白可以和上百种蛋白进行相互作用,作为许多细胞进程的重要调节因子参与植物生长发育、细胞周期调节、细胞凋亡和信号转导等多个调控网络。植物14-3-3蛋白家族包括两大类：Epsilon group和Non-epsilon group。我们对这两类蛋白序列进行了进一步的分析，发现这两类蛋白有明显的更小亚类分布，并且不同的亚类包含有不同的模体。从对水稻和拟南芥中的14-3-3基因的分析结果来看，这两类基因在染色体上的分布以及外显子数目明显不同，我们认为这两类蛋白有着不同的进化历史。达尔文正选择在蛋白进化过程中起着很重要的作用，我们对两类蛋白受到的正选择进行分析，分别发现了一些受到正选择的位点，这些位点可能在两类蛋白的进化过程中起着关键作用。水稻是最主要的粮食作物之一，水稻14-3-3基因包含8个成员：GF14a、GF14b、GF14c、GF14d、GF14e、GF14f、GF14g和GF14h。我们选取其中的OsGF14c作为研究对象，对水稻14-3-3的功能做一定探讨。OsGF14c基因位于水稻8号染色体上，cDNA全长1154bp,编码256个氨基酸。序列分析表明该基因与酵母同源基因BMH2有71%的同源性，我们将OsGF14c转入BMH2缺陷型酵母中，发现可以互补酵母14-3-3缺陷的表型。同时对OsGF14c所做的酵母双杂交实验表明，蛋白本身在体外可以形成同源二聚体。GFP融合基因稳定表达结果显示，OsGF14c定位在细胞质中。为了更好的研究该基因的功能，我们通过构建的过表达载体异源转化拟南芥，得到纯合体后我们进行了一系列的胁迫和激素处理。激素、PEG8000、LiCl和甘露醇处理的植株均未表现出明显的表型，而NaCl、KCl处理后的植株表现出盐敏感的表型。

Photoisomerising effects in nitroazo flexoelectric dimeric nematic systems

The photoisomerisation of a flexoelectric chiral nematic bimesogen system dyed with an azo dye has been investigated. The host material has a pitch and field dependent tilt angle that are temperature independent. Upon illumination by ultra violet, the azo dye molecules undergo a shape change from their trans to cis isomer. The effect of the shape change of the dye on the mixture is to decrease the I-N* transition temperatures, to increase the response times and to decrease the transmitted optical intensity. For the same reduced temperatures, the tilt angles, pitch and threshold voltages for the transition from focal conic to homeotropic textures are unchanged. The macroscopic parameters observed suggest that the orientational order parameter of the system is reduced by UV illumination. The cis isomers do not appear to separate from the host material or significantly change the flexoelectric coefficient. © 2001 OPA (Overseas Publishers Association) N.V. Published by license under the Gordon and Breach Science Publishers imprint, a member of the Taylor & Francis Group.

Pseudomitochondrial genome haunts disease studies

The accidental amplification of nuclear mitochondrial pseudogenes (NUMTs) can pose a serious problem for mitochondrial disease studies. This report shows that the mutation spectrum left by spurious amplification of a NUMT can be detected because it usuall

藏鸡线粒体全基因组序列的测定和分析

通过PCR扩增,测序,拼接,获得藏鸡(Tibetan Chicken)线粒体全基因组序列并进行数据分析处理.藏鸡线粒体全基因组序列全长16 783 bp,共有13个蛋白质编码基因、2个rRNA基因、22个tRNA基因和1个D-loop区.模拟电子酶切结果显示,藏鸡Dra Ⅰ酶的酶切结果和先前报道的原鸡,茶花鸡,尼西鸡和大理漾濞黄鸡的酶切结果都不相同,为藏鸡特有.基于D-loop区全序列和13个蛋白质编码基因序列,采用N-J算法与原鸡属4个种,3个亚种和3个家鸡品系构建系统进化树:初步确定藏鸡起源于红原鸡,与家鸡中的来航鸡、白洛克鸡亲缘关系最近,但是藏鸡的进化与来航鸡、白洛克鸡这两个家鸡品系又显得相对独立.推测可能原因是藏鸡的祖先在进入高原以后处于相对封闭的环境,从而形成了独特群体遗传特性.