kpath: An example of metabolic pathway data integration using Linked Data

The main databases related to metabolic pathways, such as Kegg, Brenda, Reactome and Biocyc, provide partially interlinked data on metabolic pathways. This limitation only allows independent searches to retrieve cross-database information on metabolism and restricts the use of more complex searches to discover new knowledge or relationships.

Semantic Web In Use

Presentation given as part of the EPrints/dotAC training day on 26 Mar 2010.

What's in a name? The Semantic Web's identity crisis

WAIS Seminar, presented 29 Mar 2012

A knowledge driven approach towards the validation of externally acquired traceability datasets in supply chain business processes

The sharing of near real-time traceability knowledge in supply chains plays a central role in coordinating business operations and is a key driver for their success. However before traceability datasets received from external partners can be integrated with datasets generated internally within an organisation, they need to be validated against information recorded for the physical goods received as well as against bespoke rules defined to ensure uniformity, consistency and completeness within the supply chain. In this paper, we present a knowledge driven framework for the runtime validation of critical constraints on incoming traceability datasets encapuslated as EPCIS event-based linked pedigrees. Our constraints are defined using SPARQL queries and SPIN rules. We present a novel validation architecture based on the integration of Apache Storm framework for real time, distributed computation with popular Semantic Web/Linked data libraries and exemplify our methodology on an abstraction of the pharmaceutical supply chain.

Modelling and linking transformations in EPCIS governing supply chain business processes

Supply chains comprise of complex processes spanning across multiple trading partners. The various operations involved generate large number of events that need to be integrated in order to enable internal and external traceability. Further, provenance of artifacts and agents involved in the supply chain operations is now a key traceability requirement. In this paper we propose a Semantic web/Linked data powered framework for the event based representation and analysis of supply chain activities governed by the EPCIS specification. We specifically show how a new EPCIS event type called "Transformation Event" can be semantically annotated using EEM - The EPCIS Event Model to generate linked data, that can be exploited for internal event based traceability in supply chains involving transformation of products. For integrating provenance with traceability, we propose a mapping from EEM to PROV-O. We exemplify our approach on an abstraction of the production processes that are part of the wine supply chain.

Sharing through Collaborative Spaces: Enhancing Collaborative Networks Interoperability

Part 14: Interoperability and Integration

Using Provenance for Quality Assessment and Repair in Linked Open Data

As the number of data sources publishing their data on the Web of Data is growing, we are experiencing an immense growth of the Linked Open Data cloud. The lack of control on the published sources, which could be untrustworthy or unreliable, along with their dynamic nature that often invalidates links and causes conflicts or other discrepancies, could lead to poor quality data. In order to judge data quality, a number of quality indicators have been proposed, coupled with quality metrics that quantify the “quality level” of a dataset. In addition to the above, some approaches address how to improve the quality of the datasets through a repair process that focuses on how to correct invalidities caused by constraint violations by either removing or adding triples. In this paper we argue that provenance is a critical factor that should be taken into account during repairs to ensure that the most reliable data is kept. Based on this idea, we propose quality metrics that take into account provenance and evaluate their applicability as repair guidelines in a particular data fusion setting.

Publishing Orthology and Diseases Information in the Linked Open Data Cloud

The Linked Data initiative offers a straight method to publish structured data in the World Wide Web and link it to other data, resulting in a world wide network of semantically codified data known as the Linked Open Data cloud. The size of the Linked Open Data cloud, i.e. the amount of data published using Linked Data principles, is growing exponentially, including life sciences data. However, key information for biological research is still missing in the Linked Open Data cloud. For example, the relation between orthologs genes and genetic diseases is absent, even though such information can be used for hypothesis generation regarding human diseases. The OGOLOD system, an extension of the OGO Knowledge Base, publishes orthologs/diseases information using Linked Data. This gives the scientists the ability to query the structured information in connection with other Linked Data and to discover new information related to orthologs and human diseases in the cloud.

Providing energy efficiency location-based strategies for buildings using linked open data

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies.

Dades obertes enllaçades (Linked Open Data) en el món de l'educació : Una visió de l'estat de l'art d'aquesta tecnologia aplicada a l'ensenyament i l'aprenentatge

En el present treball hem tractat d'aportar una visió actual del món de les dades obertes enllaçades en l'àmbit de l'educació. Hem revisat tant les aplicacions que van dirigides a implementar aquestes tecnologies en els repositoris de dades existents (pàgines web, repositoris d'objectes educacionals, repositoris de cursos i programes educatius) com a ser suport de nous paradigmes dins del món de l'educació.

Implementing Widely-used Vocabularies to Produce Linked Open Data in the Context of Open Repositories

Presentation at Open Repositories 2014, Helsinki, Finland, June 9-13, 2014

Information access law and disclosing of information by joint-stock companies in Brazil: open data and Extensible Business Reporting Language (XBRL) standard

The strategic management of information plays a fundamental role in the organizational management process since the decision-making process depend on the need for survival in a highly competitive market. Companies are constantly concerned about information transparency and good practices of corporate governance (CG) which, in turn, directs relations between the controlling power of the company and investors. In this context, this article presents the relationship between the disclosing of information of joint-stock companies by means of using XBRL, the open data model adopted by the Brazilian government, a model that boosted the publication of Information Access Law (Lei de Acesso à Informação), nº 12,527 of 18 November 2011. Information access should be permeated by a mediation policy in order to subsidize the knowledge construction and decision-making of investors. The XBRL is the main model for the publishing of financial information. The use of XBRL by means of new semantic standard created for Linked Data, strengthens the information dissemination, as well as creates analysis mechanisms and cross-referencing of data with different open databases available on the Internet, providing added value to the data/information accessed by civil society.

Estudio de las posibilidades de los datos abiertos enlazados (Linked Open Data) para la realización de mashups de ámbito geográfico.

La web ha sufrido una drástica transformación en los últimos años, debido principalmente a su popularización y a la enorme cantidad de información que alberga. Debido a estos factores se ha dado el salto de la denominada Web de Documentos, a la Web Semántica, donde toda la información está relacionada con otra. Las principales ventajas de la información enlazada estriban en la facilidad de reutilización, accesibilidad y disponibilidad para ser encontrada por el usuario. En este trabajo se pretende poner de manifiesto la utilidad de los datos enlazados aplicados al ámbito geográfico y mostrar como pueden ser empleados hoy en día. Para ello se han explotado datos enlazados de carácter espacial provenientes de diferentes fuentes, a través de servidores externos o endpoints SPARQL. Además de eso se ha trabajado con un servidor privado capaz de proporcionar información enlazada almacenada en un equipo personal. La explotación de información enlazada se ha implementado en una aplicación web en lenguaje JavaScript, tratando de abstraer totalmente al usuario del tratamiento de los datos a nivel interno de la aplicación. Esta aplicación cuenta además con algunos módulos y opciones capaces de interactuar con las consultas realizadas a los servidores, consiguiendo un entorno más intuitivo y agradable para el usuario. ABSTRACT: In recent years the web has suffered a drastic transformation because of the popularization and the huge amount of stored information. Due to these factors it has gone from Documents web to Semantic web, where the data are linked. The main advantages of Linked Data lie in the ease of his reuse, accessibility and availability to be located by users. The aim of this research is to highlight the usefulness of the geographic linked data and show how can be used at present time. To get this, the spatial linked data coming from several sources have been managed through external servers or also called endpoints. Besides, it has been worked with a private server able to provide linked data stored in a personal computer. The use of linked data has been implemented in a JavaScript web application, trying completely to abstract the internally data treatment of the application to make the user ignore it. This application has some modules and options that are able to interact with the queries made to the servers, getting a more intuitive and kind environment for users.

3LD: towards high quality, industry-ready linguistic Linked Licensed Data

The application of Linked Data technology to the publication of linguistic data promises to facilitate interoperability of these data and has lead to the emergence of the so called Linguistic Linked Data Cloud (LLD) in which linguistic data is published following the Linked Data principles. Three essential issues need to be addressed for such data to be easily exploitable by language technologies: i) appropriate machine-readable licensing information is needed for each dataset, ii) minimum quality standards for Linguistic Linked Data need to be defined, and iii) appropriate vocabularies for publishing Linguistic Linked Data resources are needed. We propose the notion of Licensed Linguistic Linked Data (3LD) in which different licensing models might co-exist, from totally open to more restrictive licenses through to completely closed datasets.

A geographic opportunistic forwarding strategy for vehicular named data networking

Studies in Computational Intelligence, 616