Mining gene networks with application to GAW15 problem 1

The genetic analysis workshop 15 (GAW15) problem 1 contained baseline expression levels of 8793 genes in immortalised B cells from 194 individuals in 14 Centre d’Etude du Polymorphisme Humane (CEPH) Utah pedigrees. Previous analysis of the data showed linkage and association and evidence of substantial individual variations. In particular, correlation was examined on expression levels of 31 genes and 25 target genes corresponding to two master regulatory regions. In this analysis, we apply Bayesian network analysis to gain further insight into these findings. We identify strong dependences and therefore provide additional insight into the underlying relationships between the genes involved. More generally, the approach is expected to be applicable for integrated analysis of genes on biological pathways.

Migration, immobility and displacement outcomes following extreme events

There is growing international concern at the rise in the severity of impact and frequency of extreme environmental events, potentially as a manifestation of global environmental change. There is a widely held belief that this trend could be linked with a future rise in the migration or displacement of human populations. However, recent approaches to migration influenced by environmental change call into question the notion that migration can be ascribed in a singular way to particular environmental causes or events. This paper undertakes a systematic review of evidence on population movements associated with weather-related extreme events. The paper demonstrates that in the face of extreme environmental events, it is important to distinguish between three outcomes – migration, displacement, and immobility – each of which interact and respond to multiple drivers. It also proposes a further insight: that both those who move, and those who do not move, may find themselves trapped and vulnerable in the face of such extreme events. A review of evidence suggests that short-term displacement that goes hand-in-hand with loss of life, destruction of property and economic disruption poses significant risks not because it is ‘environmental migration’, but because it represents a failure of adaptation to environmental change.

Soil management in relation to sustainable agriculture and ecosystem services

Requirements for research, practices and policies affecting soil management in relation to global food security are reviewed. Managing soil organic carbon (C) is central because soil organic matter influences numerous soil properties relevant to ecosystem functioning and crop growth. Even small changes in total C content can have disproportionately large impacts on key soil physical properties. Practices to encourage maintenance of soil C are important for ensuring sustainability of all soil functions. Soil is a major store of C within the biosphere – increases or decreases in this large stock can either mitigate or worsen climate change. Deforestation, conversion of grasslands to arable cropping and drainage of wetlands all cause emission of C; policies and international action to minimise these changes are urgently required. Sequestration of C in soil can contribute to climate change mitigation but the real impact of different options is often misunderstood. Some changes in management that are beneficial for soil C, increase emissions of nitrous oxide (a powerful greenhouse gas) thus cancelling the benefit. Research on soil physical processes and their interactions with roots can lead to improved and novel practices to improve crop access to water and nutrients. Increased understanding of root function has implications for selection and breeding of crops to maximise capture of water and nutrients. Roots are also a means of delivering natural plant-produced chemicals into soil with potentially beneficial impacts. These include biocontrol of soil-borne pests and diseases and inhibition of the nitrification process in soil (conversion of ammonium to nitrate) with possible benefits for improved nitrogen use efficiency and decreased nitrous oxide emission. The application of molecular methods to studies of soil organisms, and their interactions with roots, is providing new understanding of soil ecology and the basis for novel practical applications. Policy makers and those concerned with development of management approaches need to keep a watching brief on emerging possibilities from this fast-moving area of science. Nutrient management is a key challenge for global food production: there is an urgent need to increase nutrient availability to crops grown by smallholder farmers in developing countries. Many changes in practices including inter-cropping, inclusion of nitrogen-fixing crops, agroforestry and improved recycling have been clearly demonstrated to be beneficial: facilitating policies and practical strategies are needed to make these widely available, taking account of local economic and social conditions. In the longer term fertilizers will be essential for food security: policies and actions are needed to make these available and affordable to small farmers. In developed regions, and those developing rapidly such as China, strategies and policies to manage more precisely the necessarily large flows of nutrients in ways that minimise environmental damage are essential. A specific issue is to minimise emissions of nitrous oxide whilst ensuring sufficient nitrogen is available for adequate food production. Application of known strategies (through either regulation or education), technological developments, and continued research to improve understanding of basic processes will all play a part. Decreasing soil erosion is essential, both to maintain the soil resource and to minimise downstream damage such as sedimentation of rivers with adverse impacts on fisheries. Practical strategies are well known but often have financial implications for farmers. Examples of systems for paying one group of land users for ecosystem services affecting others exist in several parts of the world and serve as a model.

Clubroot (Plasmodiophora brassicae Woronin): an agricultural and biological challenge worldwide

Clubroot disease and the causal microbe Plasmodiophora brassicae offer abundant challenges to agriculturists and biological scientists. This microbe is well fitted for the environments which it inhabits. Plasmodiophora brassicae exists in soil as microscopic well protected resting spores and then grows actively and reproduces while shielded inside the roots of host plants. The pathogen is active outside the host for only short periods. Consequently, scientific studies are made challenging by the biological context of the host and pathogen and the technology required to investigate and understand that relationship. Controlling clubroot disease is a challenge for farmers, crop consultants and plant pathology practitioners because of the limited options which are available. Full symptom expression happens solely in members of the Brassicaceae family. Currently, only a few genes expressing strong resistance to P. brassicae are known and readily available. Agrochemical control is similarly limited by difficulties in molecule formulation which combines efficacy with environmental acceptability. Manipulation of husbandry encouraging improvements in soil structure, texture, nutrient composition and moisture content can reduce populations of P. brassicae. Integrating such strategies with rotation and crop management will reduce but not eliminate this disease. There are indications that forms of biological competition may be mobilised as additions to integrated control strategies. The aim of this review is to chart key themes in the development of scientific biological understanding of this host-pathogen relationship by offering signposts to grapple with clubroot disease which devastates crops and their profitability. Particular attention is given to the link between soil and nutrient chemistry and activity of this microbe.

Adequação de cadeia de suprimentos : um estudo na indústria automotiva brasileira

O conceito de cadeias de suprimentos (supp/y chains) é um dos mais avançados, no contexto da gestão contemporânea de empreendimentos, sendo fundamental para a compreensão da ação dos integrantes dos ramos e canais de fornecimento de recursos para a produção de produtos e serviços. Na indústria da mobilidade, que compreende os esforços voltados para a produção de meios de transporte de tangíveis em geral (incluindo veículos automotores, navios, locomotivas, aviões, dentre outros), a cadeia de suprimentos é complexa e envolve múltiplos canais. Dentre os vários canais, há o que se ocupa de fornecer componentes essenciais para a fabricação de veículos automotores, destacando-se, neste, o de fornecimento de DET (dispositivo eletrônico por toque). Numa economia globalizada, como ocorre no Brasil, neste princípio do século XXI , DET e outros componentes podem ser adquiridos no país ou em qualquer outro lugar do planeta, onde preço, qualidade e condições de fornecimento se mostrarem competitivos. Há, entretanto, fatores perturbadores que prevalecem, mesmo em situação de comércio praticamente livre e com o predomínio de acordos comerciais bilaterais ou multilaterais. Um desses fatores é o risco cambial, aliás, um fenômeno típico da realidade atual, onde instabilidades monetárias podem fazer oscilar a cotação das moedas, alterando inteiramente os padrões de custos vigentes na cadeia de suprimentos, afetando o processo de tomada de decisões e o preço final do produto para o cliente. Visando a reduzir este problema, uma montadora de veículos instalada no Brasil (aqui denominada MAGfl manifestou-se interessada em que os fornecedores de DET com gabarito para integrar sua supp/y chain pudessem fornecer produtos em moeda nacional, significando, na prática, a busca de soluções para melhorar sua competitividade (em qualidade e preço, a primeira com um leque maior de fornecedores e o segundo através da redução do espectro de variações de custo, eliminadas as oscilações cambiais). Deste modo, a empresa pretendeu agregar valor aos seus produtos. A presente dissertação de mestrado, utilizando o método combinado de estudo de caso com PAR (Participatory Action Research ou pesquisaação), retrata a experiência vivida por uma organização transnacional, com negócios no país (a ETE), em sua busca de solução para adequar-se aos objetivos do cliente MAG, adaptando o canal de fornecimento para que maior valor agregado possa ser percebido. A dissertação procura, neste sentido, acompanhar o processo de análise e estudos de viabilidade de um empreendimento denominado "Projeto High Sound", realizado pelas organizações envolvidas, incluindo a pesquisa e a constituição de uma joint venture com parceiro nacional (PAN), contemplando, por fim, a análise de oportunidade sobre a possível operação direta futura da ETE no país confrontada com a análise de manutenção de operação com gestão compartilhada, em sistema de off-set, com empresa gerenciadora de canais de comercialização

Identificação e análise dos riscos associados ao processo de mudança na implantação de um novo modelo de gestão de operações

Este estudo, por meio de uma pesquisa exploratória, descritiva e explicativa, buscou identificar os riscos associados ao processo de mudança na implantação de um novo modelo de gestão de operações denominado gerenciamento integrado de operações (GIOp), considerando novos processos e tecnologias na área de negócio de E&P da Petrobras. Utilizando como referência o modelo proposto por Kotter (1996), no qual identifica oito passos para a gestão de mudança em uma organização, e com base na aplicação do questionário proposto por Cohen (2005) denominado “The Change Readiness Assessment”, que permite aferir dentro dos oito passos onde estão localizados potenciais riscos e ameaças, este estudo apresenta reflexões sobre as percepções de quatro categorias de trabalho (executivos, gerentes, técnicos e equipe de projeto) da UO-ES, e de que forma impactam na prontidão para a mudança. O estudo trata também da importância do papel fundamental desempenhado por líderes neste processo, que asseguram o patrocínio necessário para a sustentabilidade do projeto. O resultado dos questionários demonstra uma percepção de risco considerável em todas as categorias. O único passo que não foi abrangido na área de risco é o senso de urgência (passo 1), que apresentou baixo risco. Como a mudança não se sustenta somente no passo 1, é importante que se reúnam os indivíduos, no sentido de buscar desenvolver uma avaliação compartilhada das questões relativas ao processo de mudança (problemas, oportunidades) entre os grupos envolvidos, objetivando um clima de confiança e de comunicação acerca do projeto, para assegurar que os resultados sejam atingidos. Nesse contexto, o sentido de urgência serve como força motriz para acelerar e dinamizar os passos seguintes.

Mulheres professoras: memórias da organização docente

Se estudia el Movimiento de las Profesoras Primarias de la Red Estadual de Enseñanza, en Salvador/BA como un movimiento social responsable por la creación de la entidad representativa de la categoría la Sociedade Unificadora de Profesores Primários (SUPP). Se parte del presupuesto de que los intereses en la valorización profesional constituyen factores fundamentales para su eclosión. Se recurre a un referente teórico para sedimentar la investigación empírica realizada a través de las profesoras primarias que participaron del Movimiento; una vez que reúne recuerdos individuales y colectivos. Se abordan las condiciones sociales, políticas, económicas y educativas que viabilizaron el surgimiento de dicho movimiento y se delimita el intervalo temporal entre 1947 al 1951. Se destaca que fueron necesarios hacer recortes históricos, los cuales han antecedido y proseguido a ése período, en función al relieve del contexto histórico-social para la comprensión de lo que fue y dónde se ubicaba el objeto de la investigación. Se identificaron tres marcos: el primero se refiere a las motivaciones en defensa de la valorización profesional, situado en un contexto de reformas educativas y pensamiento democrático; el segundo vinculado a la creación de la entidad representativa, fomentando por la necesidad de creación de una institución representativa que pudiese resguardar la categoría. Por lo tanto, se delinea la construcción histórica del Movimiento de las Profesoras Primarias, utilizando las categorías de docencia y movimiento social, de forma interpretativa. Se articulan a los hechos y acontecimientos que marcaron ése movimiento y su importancia para la Historia de la Educación de Bahia. Aun que la lucha por la valoración salarial haya sido el possibilitador de la creación de la SUPP, se constato que fue una movilización política y social buscó el sentido y el significado de lo que sea docencia con acciones que intentaban la integración del profesorado primario baiano (del interior con los de la capital) y promover el desarrollo cultural aliado a la concientización de la categoría

Evaluative comparison of physician-based vs. patient-based outcomes in posterior lumbar fusion

Posterior lumbar fusion is a frequently performed procedure in spinal surgery. High percentages of good and excellent results are indicated by physicians. On the other hand patient-based outcomes are reported. Little is known about the correlations of these two assessment types. We aimed at their comparison. The analysis included 1013 patients with degenerative spinal disease or spondylolisthesis from an international spine registry, treated with posterior lumbar fusion. All patients were pre/postop assessed by physician-based McNab criteria (‘excellent’, ‘good’, ‘fair’, ‘poor’). Of these patients, 210 (mean age 61 years; 57% females) were in addition assessed by patient-based Oswestry Disability Index (ODI). The remaining 803 patients (mean age 59 years; 56% females) were assessed by patient-based Core Outcome Measure Index (COMI), including Visual Analogue Scale (VAS) for back and leg pain as well as verbal self-rating (‘helped a lot’, ‘helped’, ‘helped only little’, ‘didn’t help’, ‘made things worse’). McNab criteria were compared to the Minimal Clinically Important Difference (MCID) in ODI (12.8), in VAS back (1.2) and leg pain (1.6). We investigated the correlations between McNab criteria and these patient-based outcomes. In the ‘excellent’ group as rated by physicians, the proposed MCID was reached in 83% of patients for ODI, in 69% for VAS back and in 83% for VAS leg pain. All patients said the treatment had ‘helped’ or ‘helped a lot’. In the ‘good’ group 56% (ODI), 66% (back pain) and 86% (leg pain) reached the MCID. 96% of patients perceived the treatment as positive. In the ‘fair’ group 37% (ODI), 55% (back pain) and 63% (leg pain) reached the MCID. 49% had positive treatment considerations. The ‘poor’ group revealed 30% (ODI), 35% (back pain) and 44% (leg pain) of patients with reached MCID. Only 15% rated the treatment as positive. The Spearman correlation coefficients between McNab criteria on the one hand and ODI, back and leg pain as well as patients’ verbal self-rating on the other hand were 0.57, 0.37, 0.36 and 0.46 respectively. The comparison of physician and patient-based outcomes showed the highest correlations between McNab criteria and ODI, somewhat weaker correlations with patients’ self-rating and the weakest correlations with back and leg pain. Based on these findings, physicians’ evaluation of patient outcomes can be considered a valuable part of patient assessment, corresponding very well with patients’ perceptions of success or failure of spinal surgery.