The structure and petrology of the Johnny Lyon Hills area, Cochise County, Arizona

The Johnny Lyon Hills area is located in Cochise County in southeastern Arizona. The rocks of the area include a central core of Lower pre-Cambrian igneous and metamorphic rocks surrounded by a complexly faulted and tilted section of Upper pre-Cambrian and Paleozoic strata. Limited exposures of Mesozoic and Tertiary sedimentary and volcanic rocks are present at the north end of the map area. Late Tertiary and Quaternary alluvium almost completely surrounds and overlaps upon the older rocks.

The older pre-Cambrian rocks include a section of more than 9000 feet of generally moderately metamorphosed graywackes, slates and conglomerates of the Pinal schist injected in zones by somewhat younger rnyolite sheets. The original sediments were deposited in a geosyncline whose extent probably included large parts of Arizona, New Mexico and west Texas. During the Mazatzal Revolution the Pinal schist was deformed into northeast-trending, steeply dipping and plunging structures and the entire local section was overturned steeply toward the northwest. The pre-Cambrian Johnny Lyon granodiorite was emplaced as a large epi-tectonic pluton which modified the metamorphic character of part of the Pinal schist. Larsen method determinations indicate an age of about 715 million years for this rock, which is about the minimum age compatible with the geologic relations.

The Laramide orogeny produced numerous major thrust faults in the area involving all rocks older than and including the Lower Cretaceous Bisbee group. Major compression from the southwest and subsequent superimposed thrusting from the southeast and east are indicated. Minimum thrust displacements of more than a mile are clear and the probable displacements are of much greater magnitude. The crystalline core behaved as a single structural unit and probably caused important local divergences from the regional pattern of northeast-trending compressive forces. The massif was rotated as a unit 40 degrees or more about a northwest-trending axis overturning the pre-Cambrian fold axes in the Pinal schist.

Swarms of Late Cretaceous(?) or Early Tertiary(?) lamprophyric dikes cross the Laramide structures and are probably related to the large Texas Canyon stock several miles southeast of the map area. Intermittent high angle faulting, both older and younger than the dikes, has continued since the Laramide orogeny and has been superimposed on the older structures. This steep faulting combined with the fundamental northwesterly Laramide structural grain to produce the northwesterly trends characteristic of the mountain ridges and valleys of the area.

Did galaxies reionize the universe?

The epoch of reionization remains one of the last uncharted eras of cosmic history, yet this time is of crucial importance, encompassing the formation of both the first galaxies and the first metals in the universe. In this thesis, I present four related projects that both characterize the abundance and properties of these first galaxies and uses follow-up observations of these galaxies to achieve one of the first observations of the neutral fraction of the intergalactic medium during the heart of the reionization era.

First, we present the results of a spectroscopic survey using the Keck telescopes targeting 6.3 < z < 8.8 star-forming galaxies. We secured observations of 19 candidates, initially selected by applying the Lyman break technique to infrared imaging data from the Wide Field Camera 3 (WFC3) onboard the Hubble Space Telescope (HST). This survey builds upon earlier work from Stark et al. (2010, 2011), which showed that star-forming galaxies at 3 < z < 6, when the universe was highly ionized, displayed a significant increase in strong Lyman alpha emission with redshift. Our work uses the LRIS and NIRSPEC instruments to search for Lyman alpha emission in candidates at a greater redshift in the observed near-infrared, in order to discern if this evolution continues, or is quenched by an increase in the neutral fraction of the intergalactic medium. Our spectroscopic observations typically reach a 5-sigma limiting sensitivity of < 50 AA. Despite expecting to detect Lyman alpha at 5-sigma in 7-8 galaxies based on our Monte Carlo simulations, we only achieve secure detections in two of 19 sources. Combining these results with a similar sample of 7 galaxies from Fontana et al. (2010), we determine that these few detections would only occur in < 1% of simulations if the intrinsic distribution was the same as that at z ~ 6. We consider other explanations for this decline, but find the most convincing explanation to be an increase in the neutral fraction of the intergalactic medium. Using theoretical models, we infer a neutral fraction of X_HI ~ 0.44 at z = 7.

Second, we characterize the abundance of star-forming galaxies at z > 6.5 again using WFC3 onboard the HST. This project conducted a detailed search for candidates both in the Hubble Ultra Deep Field as well as a number of additional wider Hubble Space Telescope surveys to construct luminosity functions at both z ~ 7 and 8, reaching 0.65 and 0.25 mag fainter than any previous surveys, respectively. With this increased depth, we achieve some of the most robust constraints on the Schechter function faint end slopes at these redshifts, finding very steep values of alpha_{z~7} = -1.87 +/- 0.18 and alpha_{z~8} = -1.94 +/- 0.23. We discuss these results in the context of cosmic reionization, and show that given reasonable assumptions about the ionizing spectra and escape fraction of ionizing photons, only half the photons needed to maintain reionization are provided by currently observable galaxies at z ~ 7-8. We show that an extension of the luminosity function down to M_{UV} = -13.0, coupled with a low level of star-formation out to higher redshift, can fit all available constraints on the ionization history of the universe.

Third, we investigate the strength of nebular emission in 3 < z < 5 star-forming galaxies. We begin by using the Infrared Array Camera (IRAC) onboard the Spitzer Space Telescope to investigate the strength of H alpha emission in a sample of 3.8 < z < 5.0 spectroscopically confirmed galaxies. We then conduct near-infrared observations of star-forming galaxies at 3 < z < 3.8 to investigate the strength of the [OIII] 4959/5007 and H beta emission lines from the ground using MOSFIRE. In both cases, we uncover near-ubiquitous strong nebular emission, and find excellent agreement between the fluxes derived using the separate methods. For a subset of 9 objects in our MOSFIRE sample that have secure Spitzer IRAC detections, we compare the emission line flux derived from the excess in the K_s band photometry to that derived from direct spectroscopy and find 7 to agree within a factor of 1.6, with only one catastrophic outlier. Finally, for a different subset for which we also have DEIMOS rest-UV spectroscopy, we compare the relative velocities of Lyman alpha and the rest-optical nebular lines which should trace the cites of star-formation. We find a median velocity offset of only v_{Ly alpha} = 149 km/s, significantly less than the 400 km/s observed for star-forming galaxies with weaker Lyman alpha emission at z = 2-3 (Steidel et al. 2010), and show that this decrease can be explained by a decrease in the neutral hydrogen column density covering the galaxy. We discuss how this will imply a lower neutral fraction for a given observed extinction of Lyman alpha when its visibility is used to probe the ionization state of the intergalactic medium.

Finally, we utilize the recent CANDELS wide-field, infra-red photometry over the GOODS-N and S fields to re-analyze the use of Lyman alpha emission to evaluate the neutrality of the intergalactic medium. With this new data, we derive accurate ultraviolet spectral slopes for a sample of 468 3 < z < 6 star-forming galaxies, already observed in the rest-UV with the Keck spectroscopic survey (Stark et al. 2010). We use a Bayesian fitting method which accurately accounts for contamination and obscuration by skylines to derive a relationship between the UV-slope of a galaxy and its intrinsic Lyman alpha equivalent width probability distribution. We then apply this data to spectroscopic surveys during the reionization era, including our own, to accurately interpret the drop in observed Lyman alpha emission. From our most recent such MOSFIRE survey, we also present evidence for the most distant galaxy confirmed through emission line spectroscopy at z = 7.62, as well as a first detection of the CIII]1907/1909 doublet at z > 7.

We conclude the thesis by exploring future prospects and summarizing the results of Robertson et al. (2013). This work synthesizes many of the measurements in this thesis, along with external constraints, to create a model of reionization that fits nearly all available constraints.

Development of roll waves in open channels

This study is concerned with some of the properties of roll waves that develop naturally from a turbulent uniform flow in a wide rectangular channel on a constant steep slope . The wave properties considered were depth at the wave crest, depth at the wave trough, wave period, and wave velocity . The primary focus was on the mean values and standard deviations of the crest depths and wave periods at a given station and how these quantities varied with distance along the channel.

The wave properties were measured in a laboratory channel in which roll waves developed naturally from a uniform flow . The Froude number F (F = u_n/√gh_n, u_n = normal velocity , h_n = normal depth, g =acceleration of gravity) ranged from 3. 4 to 6. 0 for channel slopes S_o of . 05 and . 12 respectively . In the initial phase of their development the roll waves appeared as small amplitude waves with a continuous water surface profile . These small amplitude waves subsequently developed into large amplitude shock waves. Shock waves were found to overtake and combine with other shock waves with the result that the crest depth of the combined wave was larger than the crest depths before the overtake. Once roll waves began to develop, the mean value of the crest depths h_nmax increased with distance . Once the shock waves began to overtake, the mean wave period T_av increased approximately linearly with distance.

For a given Froude number and channel slope the observed quantities h^-_max/h_n , T' (T' = S_o T_av √g/h_n), and the standard deviations of h^-_max/h_n and T', could be expressed as unique functions of l/h_n (l = distance from beginning of channel) for the two-fold change in h_n occurring in the observed flows . A given value of h^-_max/h_n occurred at smaller values of l/h_n as the Froude number was increased. For a given value of h /hh^-_max/h_n the growth rate of δh^-_max/h^-_maxδl of the shock waves increased as the Froude number was increased.

A laboratory channel was also used to measure the wave properties of periodic permanent roll waves. For a given Froude number and channel slope the h^-_max/h_n vs. T' relation did not agree with a theory in which the weight of the shock front was neglected. After the theory was modified to include this weight, the observed values of h^-_max/h_n were within an average of 6.5 percent of the predicted values, and the maximum discrepancy was 13.5 percent.

For h^-_max/h_n sufficiently large (h^-_max/h_n > approximately 1.5) it was found that the h^-_max/h_n vs. T' relation for natural roll waves was practically identical to the h^-_max/h_n vs. T' relation for periodic permanent roll waves at the same Froude number and slope. As a result of this correspondence between periodic and natural roll waves, the growth rate δh^-_max/h^-_maxδl of shock waves was predicted to depend on the channel slope, and this slope dependence was observed in the experiments.

Experiments using an artificial stream to investigate the seasonal growth of chalk-stream algae

Research into the production ecology of chalk streams using a large artificial recirculating stream is described. Physical chemical processes including calcium and inorganic phosphate levels, and exchange of gaseous carbon dioxide in both a simple closed system and a circulating system with gravel substrate have been monitored in both light and dark conditions. Further experiments were concerned with the seasonal changes in algal growth over the gravel substrate with constant water velocities and replenishment. The algal population, composed mainly of the diatoms Achnanthes minutissima, Meridion circulare, Nitzschia fonticola and Synedra ulna reached a peak in mid May and declined rapidly during June. Concentrations of phosphate phosphorus fell as the diatoms grew but was not thought to limit growth. Silicate concentrations followed the diatom cycle closely but never fell below 0.8 mg/l Si. It is possible that one of the nutrients may have been limiting the rate of growth due to steep diffusion gradients through the algal mat. In the last summer and autumn a hard calcareous crust composed of the green alga Gongrosira incrustans and the blue green alga Homeothrix varians , developed. The channel stream is compared with the natural conditions found in chalk streams.

Photoproduction of charged pion pairs from hydrogen at photon energies between 800 and 1500 MeV

The reaction γ + p p + π⁺ + π^- has been studied for photon energies between 800 and 1500 MeV and for dipion masses between 510 and 900 MeV. The bremsstrahlung beam from the Caltech synchrotron was passed through a liquid hydrogen target and spark chambers were used to detect the three final particles. In addition, the proton energy was determined by a range measurement. Approximately 40,000 photographs were taken, yielding 3018 acceptable events. The results were fit to an incoherent combination of the N*(1238) resonance, the p^o (750) resonance, and three-body phase space, with various models being tried for p^o production. The total cross section for p^o production is consistent with previous experiments. However, the angular dependence of the cross section is slightly more peaked in the forward direction, and the ratio of p^o production to phase space production is larger than previously observed.

However, since this experiment was only sensitive to the production angles cos θ cm ≥ .75, statistical fluctuations and/or an anisotropic distribution of background production have a severe influence on the p^o to background ratio. Of the p^o models tested, the results prefer p^o production by the one pion exchange mechanism with a very steep form factor dependence. The values of the mass and width of the p^o found here are consistent with previous experiments.

Nuclear magnetic resonance studies of protein conformation: I. Ribonuclease S. II. Hemoglobin

Fluorine nuclear magnetic resonance techniques have been used to study conformational processes in two proteins labeled specifically in strategic regions with covalently attached fluorinated molecules. In ribonuclease S, the ϵ-amino groups of lysines 1 and 7 were trifluoroacetylated without diminishing enzymatic activity. As inhibitors bound to the enzyme, changes in orientation of the peptide segment containing the trifluoroacetyl groups were detected in the nuclear magnetic resonance spectrum. pH Titration of one of the histidines in the active site produced a reversal of the conformational process.

Hemoglobin was trifluoroacetonylated at the reactive cysteine 93 of each β chain. The nuclear magnetic resonance spectrum of the fluorine moiety reflected changes in the equilibrium position of the β chain carboxy terminus upon binding of heme ligands and allosteric effectors. The chemical shift positions observed in deoxy- and methemoglobin were pH dependent, undergoing an abnormally steep apparent titration which was not observed in hemoglobin from which histidine β 146 had been removed enzymatically. The abnormal sharpness of these pH dependent processes is probably due to interactions between several ionizing groups.

The carbon monoxide binding process was studied by concurrent observation of the visible and nuclear magnetic resonance spectra of trifluoroacetonylated hemoglobin at fractional ligand saturations throughout the range 0-1.0. Comparison of the ligand binding process observed in these two ways yields evidence for a specific order of ligand binding. The sequence of events is sensitive to the pH and organic phosphate concentration of the medium, demonstrating the delicately balanced control system produced by interactions between the hemoglobin subunits and the effectors.

The structure of liquid argon as determined by x-ray diffraction

X-ray diffraction measurements and subsequent data analyses have been carried out on liquid argon at five states in the density range of 0.91 to 1.135 gm/cc and temperature range of 127 to 143°K. Duplicate measurements were made on all states. These data yielded radial distribution and direct correlation functions which were then used to compute the pair potential using the Percus-Yevick equation. The potential minima are in the range of -105 to -120°K and appear to substantiate current theoretical estimates of the effective pair potential in the presence of a weak three-body force.

The data analysis procedure used was new and does not distinguish between the coherent and incoherent absorption factors for the cell scattering which were essentially equal. With this simplification, the argon scattering estimate was compared to the gas scattering estimate on the laboratory frame of reference and the two estimates coincided, indicating the data normalized. The argon scattering on the laboratory frame of reference was examined for the existence of the peaks in the structure factor and the existence of an observable third peak was considered doubtful.

Numerical studies of the effect of truncation, normalization, the subsidiary peak phenomenon in the radial distribution function, uncertainties in the low angle data relative to errors in the direct correlation function and the distortion phenomenon are presented.

The distortion phenomenon for this experiment explains why the Mikolaj-Pings argon data yielded pair potential well depths from the Percus-Yevick equation that were too shallow and an apparent slope with respect to density that was too steep compared to theoretical estimates.

The data presented for each measurement are: empty cell and cell plus argon intensity, absorption factors, argon intensity, smoothed argon intensity, smoothed argon intensity corrected for distortion, structure factor, radial distribution function, direct correlation function and the pair potential from the Percus-Yevick equation.

利用二维光谱色散和透镜列阵改善靶面辐照均匀性

利用二维光谱色散平滑技术和透镜列阵(LA)来改善激光驱动器中靶面的辐照均匀性。通过消衍射透镜列阵可得到包络陡峭且中小空间尺度均匀性较好的焦斑。当在光路中加入二维光谱色散平滑单元后,光束在两个互相垂直的方向发生光谱色散,多光束干涉所引起的细密条纹也将在很大程度上被抹平,如果把横向热传导平滑效应也考虑在内,高空间频率的强度波动可进一步被消除。二维理论模拟结果表明采用该方案可获得顶部平坦边缘陡峭的焦斑,而且该方案无需仔细调整靶面的位置,实际应用较方便。

高效率,窄脉冲1198.5nm Ba(NO_3)_2喇曼激光器(英文)

利用1 064 nm的Nd∶YAG激光抽运振荡腔内的硝酸钡晶体,获得高效率、窄脉冲的喇曼激光输出.硝酸钡晶体由水溶液降温法生长,长度为48 mm.喇曼振荡腔由对抽运光、一阶、二阶斯托克斯光有不同反射率的双色平面镜构成.当抽运光功率达到4.5 W时,获得最高的一阶斯托克斯喇曼激光功率为1.48 W,相应的转换效率为32.9%,并测得斜率效率为40%.由于受激喇曼散射的作用,喇曼脉冲光由抽运脉冲光的19.8 ns压缩为2.4 ns,获得的喇曼激光脉冲波形具有的＂上升沿陡峭、下降沿缓慢＂的特性,对其形成过程作了

Interações sobre a pluviosidade em encostas de clima tropical úmido e os movimentos de massa: o caso de sub-bacias do Alto Rio São João - RJ

Cada vez são mais comuns problemas relacionados a movimentos de massa nas encostas de clima tropical no Estado do Rio de Janeiro, especialmente na Serra do Mar, provocados por acumulados pluviométricos intensos. A ocupação humana desordenada de áreas sensíveis a tais processos geomorfológicos, bem como as condicionantes geológicas, geomorfológicas, pedológicas e de uso e cobertura do solo são apontadas como fatores cruciais na explicação desses processos. O maior conhecimento da dinâmica pluviométrica bem como suas interações com tais aspectos físicos ligados ao relevo parece ser a chave dessa maior compreensão desses fenômenos. Assim foram realizadas pesquisas relacionadas aos volumes e intensidades das chuvas na região do Alto Curso do Rio São João, bem como uma análise dos movimentos de massa identificados através de imagens de satélite e in loco, como forma de fornecer subsídios à melhor gestão do espaço dessas regiões montanhosa estão vulneráveis a movimentos de massa. A correlação entre os acumulados e a intensidade pluviométrica com fenômenos climáticos de escala global, como El Niño e La Niña também foi contemplada nessa pesquisa, mostrando uma relação mais alta com relação à intensidade da chuva mensal para anos de El Niño e para anos de La Niña uma reduzida ocorrência dessas intensidades pluviométricas. Os estudos revelaram que os tipos de solos e sua cobertura e uso têm uma grande influência na deflagração de movimentos de massa. Foram observados um número reduzido de movimentos de massa em áreas naturais e uma maior proporção desses movimentos em áreas utilizadas para a atividade da pecuária na região. Grande parte dos movimentos de massa ocorreram em áreas de Cambissolos (áreas mais elevadas) e Latossolos (áreas de encostas em menores altitudes). Ambos os solos são mais espessos do que os encontrados em áreas mais declivosas, apresentando maior acúmulo de materiais a serem mobilizados durante grandes acumulados pluviométricos, gerando movimentos de massa. A análise mostrou também que áreas mais chuvosas e com maior ocorrência de acumulados pluviométricos extremos, acima de 100 mm/dia e acima de 30mm/mês concentraram um número maior de movimentos de massa, como a região mais próxima da estação de Quartéis (porção leste). Por outro lado áreas bastante elevadas, com altas declividades, porém com predomínio de Mata Atlântica e áreas com solos menos espessos, como os Neossolos Litólicos, se mostraram com um número reduzido desses processos. Enfim esse estudo mostrou a necessidade de se gerir melhor os espaços dessas áreas sensíveis sob o ponto de vista geomorfológico, até por que são áreas na periferia de regiões densamente habitadas e cujas demandas tendem a se tornar cada vez mais marcantes, o que pode gerar problemas locais, atingindo sua população e economia, com sérias conseqüências para o ambiente.

A note on the von Bertalanffy growth function concerning the allocation of surplus energy to reproduction

We propose an extended form of the von Bertalanffy growth function (VBGF), where the allocation of surplus energy to reproduction is considered. Any function can be used in our model to describe the ratio of energy allocation for reproduction to that for somatic growth. As an example, two models for energy allocation were derived: a step-function and a logistic function. The extended model can jointly describe growth in adult and juvenile stages. The change in growth rate between the two stages can be either gradual or steep; the latter gives a biphasic VBGF. The results of curve fitting indicated that a consideration of reproductive energy is meaningful for model extension. By controlling parameter values, our comprehensive model gives various growth curve shapes ranging from indeterminate to determinate growth. An increase in the number of parameters is unavoidable in practical applications of this new model. Additional information on reproduction will improve the reliability of model estimates.

Petrografia, litogeoquímica e datação Ar-Ar dos montes submarinos e dos rochedos de Martim Vaz - Cadeia Vitória-Trindade

Este trabalho de mestrado estudou a ilha de Martin Vaz e cinco montes submarinos da Cadeia Vitória-Trindade Columbia, Dogaressa, Davis, Jaseur e Montague. Martin Vaz é um conjunto de ilhas formado pela ilha principal - Martin Vaz, duas ilhotas íngremes e inacessíveis - a Ilha do Norte e a Ilha do Sul além de vários rochedos menores, como o Rochedo Agulha, espalhados a 48 km a leste de Trindade, perfazendo uma área total de 0,3 km. Martin Vaz, assim como os montes submarinos, pertencem a chamada Cadeia Vitória-Trindade, estão inseridos em um contexto tectônico regional cujo trend W-E sugere representar o track da pluma mantélica de Trindade quando da passagem da Placa Sul Americana sobre ela desde o Terciário (CROUGH et al., 1980; OCONNOR & DUNCAN, 1990, GIBSON et at., 1997). A petrografia das amostras de Martin Vaz indica haver basanitos parcialmente alteradas, melanocráticas, textura afanítica, porosas, apresentando vesículas em torno de 1,0-5,0 milímetros. Apresenta fenocristais de piroxênio além de alguns fenocristais de olivina verde-oliva translúcido variando de 1,0-3,0 milímetros. A ilha principal apresenta também diques e necks fonolíticos apresentando matriz microlítica alterada, orientada, de cor verde apresentando minerais ripiformes de cor branca (feldspato alcalino) e outros de cor violácea (titanoaugita) além de pequenos opacos. Pequenos fenocristais de aegerina-augita fortemente pleocroica, alguns apresentando geminação simples, por vezes zonado, apresenta extinção variando de c ∧ α ou X = 23 a 33 (medida de 10 grãos). Biotita laranja amarronzada com textura poiquilítica (1,0 mm), minúsculos cristais euédricos de titanita (raros), além de cristais pseudohexagonais isotrópicos alterados de analcita e carbonatos. As amostras utilizadas neste trabalho de mestrado possuem valor mínimo de 33.91 % SiO2 (TRIM-01D) e máximo de 52,2 (MVA-01) variando de ultrabásicas a básicas. Através da análise dos óxidos SiO2 e MgO é possível distinguir dois grupos de rochas para Martin Vaz: um ultramáfico magnesiano (<42% SiO2 e >7% MgO) e um básico (>45% SiO2) e, para os montes submarinos, dois grupos: um ultramáfico magnesiano (>9% MgO <42% SiO2) e um básico (>45% SiO2 e com valores de MgO em torno de 4%). As análises de Ar-Ar para as quatro amostras de Martin Vaz apresentam idades para o derrame de basanito variando de 320366 Ka (MVA-10) à 623127 Ka (MVA-04). A única amostra datada representando do dique de fonólito é a MVA-05B e obteve idade de 64984 Ka, indicando ser contemporânea ao derrame basanítico.

The Rivers Avon & Erme SAP Consultation Document

This is the Rivers Avon & Erme Salmon Action Plan Consultation document produced by the Environment Agency in 2003. This document is part of a national initiative to produce action plans for the management of all the main salmon rivers of England and Wales by 2003. The aim of this plan is (i) to assess the status of the salmon stocks and fisheries of the rivers Avon and Erme - including the use of Conservation Limits as part of this process, (ii) to identify factors which may limiting stock and fishery performance and (iii) to propose remedial measures address these factors. The report pays attention on the external consultation of the Rivers Avon & Erme Salmon Action Plan (SAP). While the stocks of both rivers have exceeded their respective conservation limits occasionally in individual years, only the Erme has achieved a period of statistical compliance since 1993. It is possible that this situation is largely normal, due to the steep nature of the rivers, obstructions to migration and dependence on suitable flow conditions occurring at the right time of year. The decline of the spring-running component of the stocks has left the populations dependent on autumn flows for the success of the late running component. Actions required to improve compliance with Conservation Limits are proposed and prioritised. The urgent actions relate to the need to improve the consistency with which adequate numbers of salmon reach and utilise fully all the accessible areas of the river systems. This document is intended to be dynamic, with opportunities for review occurring at regular intervals. For example, as the science of fisheries management improves, particularly in the setting of Conservation Limits, so the targets may be altered to reflect any improved methodology.

Benthic habitats of Buck Island Reef National Monument

NOAA’s Center for Coastal Monitoring and Assessment’s Biogeography Branch has mapped and characterized large portions of the coral reef ecosystems inside the U.S. coastal and territorial waters, including the U.S. Caribbean. The complementary protocols used in these efforts have enabled scientists and managers to quantitatively compare different marine ecosystems in tropical U.S. waters. The Biogeography Branch used these same general protocols to generate three seamless habitat maps of the Bank/Shelf (i.e., from 0 ≤50 meters) and the Bank/Shelf Escarpment (i.e., from 50 ≤1,000 meters and from 1,000 ≤ 1,830 meters) inside Buck Island Reef National Monument (BIRNM). While this mapping effort marks the fourth time that the shallow-water habitats of BIRNM have been mapped, it is the first time habitats deeper than 30 meters (m) have been characterized. Consequently, this habitat map provides information on the distribution of mesophotic and deep-water coral reef ecosystems and serves as a spatial baseline for monitoring change in the Monument. A benthic habitat map was developed for approximately 74.3 square kilometers or 98% of the BIRNM using a combination of semi-automated and manual classification methods. The remaining 2% was not mapped due to lack of imagery in the western part of the Monument at depths ranging from 1,000 to 1,400 meters. Habitats were interpreted from orthophotographs, LiDAR (Light Detection and Ranging) imagery and four different types of MBES (Multibeam Echosounder) imagery. Three minimum mapping units (MMUs) (100, 1,000 and 5,000 square meters) were used because of the wide range of depths present in the Monument. The majority of the area that was characterized was deeper than 30 m on the Bank/Shelf Escarpment. This escarpment area was dominated by uncolonized sand which transitioned to mud as depth increased. Bedrock was exposed in some areas of the escarpment, where steep slopes prevented sediment deposition. Mesophotic corals were seen in the underwater video, but were too sparsely distributed to be reliably mapped from the source imagery. Habitats on the Bank/Shelf were much more variable than those seen on the Bank/Shelf Escarpment. The majority of this shelf area was comprised of coral reef and hardbottom habitat dominated by various forms of turf, fleshy, coralline or filamentous algae. Even though algae was the dominant biological cover type, nearly a quarter (24.3%) of the Monument’s Bank/Shelf benthos hosted a cover of 10%-<50% live coral. In total, 198 unique combinations of habitat classes describing the geography, geology and biology of the sea-floor were identified from the three types of imagery listed above. No thematic accuracy assessment was conducted for areas deeper than about 50 meters, most of which was located in the Bank/Shelf Escarpment. The thematic accuracy of classes in waters shallower than approximately 50 meters ranged from 81.4% to 94.4%. These thematic accuracies are similar to those reported for other NOAA benthic habitat mapping efforts in St. John (>80%), the Main Eight Hawaiian Islands (>84.0%) and the Republic of Palau (>80.0%). These digital maps products can be used with confidence by scientists and resource managers for a multitude of different applications, including structuring monitoring programs, supporting management decisions, and establishing and managing marine conservation areas. The final deliverables for this project, including the benthic habitat maps, source imagery and in situ field data, are available to the public on a NOAA Biogeography Branch website (http://ccma.nos.noaa.gov/ecosystems/coralreef/stcroix.aspx) and through an interactive, web-based map application (http://ccma.nos.noaa.gov/explorer/biomapper/biomapper.html?id=BUIS). This report documents the process and methods used to create the shallow to deep-water benthic habitat maps for BIRNM. Chapter 1 provides a short introduction to BIRNM, including its history, marine life and ongoing research activities. Chapter 2 describes the benthic habitat classification scheme used to partition the different habitats into ecologically relevant groups. Chapter 3 explains the steps required to create a benthic habitat map using a combination of semi-automated and visual classification techniques. Chapter 4 details the steps used in the accuracy assessment and reports on the thematic accuracy of the final shallow-water map. Chapter 5 summarizes the type and abundance of each habitat class found inside BIRNM, how these habitats compare to past habitat maps and outlines how these new habitat maps may be used to inform future management activities.

Conserving oyster reef habitat by switching from dredging and tonging to diver-harvesting

A major cause of the steep declines of American oyster (Crassostrea virginica) fisheries is the loss of oyster habitat through the use of dredges that have mined the reef substrata during a century of intense harvest. Experiments comparing the efficiency and habitat impacts of three alternative gears for harvesting oysters revealed differences among gear types that might be used to help improve the sustainability of commercial oyster fisheries. Hand harvesting by divers produced 25−32% more oysters per unit of time of fishing than traditional dredging and tonging, although the dive operation required two fishermen, rather than one. Per capita returns for dive operations may nonetheless be competitive with returns for other gears even in the short term if one person culling on deck can serve two or three divers. Dredging reduced the height of reef habitat by 34%, significantly more than the 23% reduction caused by tonging, both of which were greater than the 6% reduction induced by diver hand-harvesting. Thus, conservation of the essential habitat and sustainability of the subtidal oyster fishery can be enhanced by switching to diver hand-harvesting. Management schemes must intervene to drive the change in harvest methods because fishermen will face relatively high costs in making the switch and will not necessarily realize the long-term ecological benefits.