Rapid genome wide mapping of phosphine resistance loci by a simple regional averaging analysis in the red flour beetle, Tribolium castaneum

Background Next-generation sequencing technology is an important tool for the rapid, genome-wide identification of genetic variations. However, it is difficult to resolve the ‘signal’ of variations of interest and the ‘noise’ of stochastic sequencing and bioinformatic errors in the large datasets that are generated. We report a simple approach to identify regional linkage to a trait that requires only two pools of DNA to be sequenced from progeny of a defined genetic cross (i.e. bulk segregant analysis) at low coverage (<10×) and without parentage assignment of individual SNPs. The analysis relies on regional averaging of pooled SNP frequencies to rapidly scan polymorphisms across the genome for differential regional homozygosity, which is then displayed graphically. Results Progeny from defined genetic crosses of Tribolium castaneum (F4 and F19) segregating for the phosphine resistance trait were exposed to phosphine to select for the resistance trait while the remainders were left unexposed. Next generation sequencing was then carried out on the genomic DNA from each pool of selected and unselected insects from each generation. The reads were mapped against the annotated T. castaneum genome from NCBI (v3.0) and analysed for SNP variations. Since it is difficult to accurately call individual SNP frequencies when the depth of sequence coverage is low, variant frequencies were averaged across larger regions. Results from regional SNP frequency averaging identified two loci, tc_rph1 on chromosome 8 and tc_rph2 on chromosome 9, which together are responsible for high level resistance. Identification of the two loci was possible with only 5-7× average coverage of the genome per dataset. These loci were subsequently confirmed by direct SNP marker analysis and fine-scale mapping. Individually, homozygosity of tc_rph1 or tc_rph2 results in only weak resistance to phosphine (estimated at up to 1.5-2.5× and 3-5× respectively), whereas in combination they interact synergistically to provide a high-level resistance >200×. The tc_rph2 resistance allele resulted in a significant fitness cost relative to the wild type allele in unselected beetles over eighteen generations. Conclusion We have validated the technique of linkage mapping by low-coverage sequencing of progeny from a simple genetic cross. The approach relied on regional averaging of SNP frequencies and was used to successfully identify candidate gene loci for phosphine resistance in T. castaneum. This is a relatively simple and rapid approach to identifying genomic regions associated with traits in defined genetic crosses that does not require any specialised statistical analysis.

Account of the estate of Salmen Abt, Melsungen, Kur-Hessen 1829-1842

Bound photocopies of various documents, describing the estate of Solomon Abt in the town of Melsungen in Hesse, Germany. Included are the copies of a marriage contract between Solomon Abt and Vogel Tebler; extensive lists of all of Solomon Abt’s possession when he died in 1829; correspondence of his heirs and the guardians of his children, as well as various court documents.

Account of Isaac and Abraham de Peyster vs. Isaac Seixas and other papers

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Letter from executors of Miss Pinto regarding legacy to Hebra Hased Va-Emet

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Puunoston kehittäminen Stora Enso Metsän Helsingin palvelupisteessä

The operation environment in the roundwood trade in Finland in the 1990’s include several changes. They are changes in the structure of non-industrial private forest (NIPF) ownership, forest taxation, in forest legislation, in price recommendation agreement, diminishing resources of forestry extension services, etc. At the same time, the roundwood demand has been rising. All these developments cause uncertainty in wood procurement organisations, and call for research to find out how to adapt into the changing environment. The objective of this study is to produce information for roundwood purchasing planning and cus-tomer satisfaction management to be used by Stora Enso Metsä Customer Service, Helsinki. For this pur-pose, data needs to be gathered about the urban NIPFs and their forest estates, behaviour related to forestry and timber-selling, customer satisfaction in their latest timber selling transaction, and their opinions about Enso’s new customer service office and its service concept. To fulfil the objective of the study, a NIPF -owner -survey (N=1064, response rate 39,7%) was con-ducted in October 1998-January 1999. The sample was made on the basis of the marketing database of Stora Enso Oyj Forest Customer Service in Helsinki. In planning the frame of reference of the empirical study, the model of service quality by Grönroos was applied. The following aspects were included in the 7-page questionnaire: demographic, sosio-economic and forest estate background, relation to the forest service supply, behaviour related to forestry, timber-selling motives and behaviour, last contact organisation and its image in forestry business, expectations and percep-tions in the latest timber-selling transactions, and behavioural intentions. The results revealed that the share of women, pensioners and academically educated people among forest owners was quite high. The majority of the forest estates of the metropolitan forest owners were situ-ated in the provinces of South Finland and East Finland. The average forest estate area was considerably smaller than in a previous study. Economic and recreational objectives were most important in the use of forests. Forest Associations were involved in half of the roundwood sales transactions of the respondents in the metropolitan area. The wood quantity of transactions was considerably higher than the average in the whole country. Bank-organised forest-related activities, taxation infos and trips to the forest were the most popular activities. Among the services, silvicultural advices were needed mostly and stub treatment least. Brochure material related to stumpage timber sales and taxation were considered most important compared to material related to delivery sales. The service expectations were at highest for women and they were less satisfied with the service than men. 2nd and 3rd generation residents of the metropolitan area thought about the new customer service concept more positively than the 1st generation residents. Internet users under 60 years thought more positively about new satellite picture-based woodlot search concept. Cross-tabulation of factor scores against background variables indicated that women with relatively low education level a greater need to sell roundwood than entrepreneurs, white-collar workers and directors, and Internet users. Suspiciousness towards timber procurement organisations was relatively strong among women and those whose forest income share of the total income was either null or over 20 %. The average customer satisfaction score was negative in all nine questions. Statistical differences be-tween different companies did not exist in the average satisfaction scores. Stora Enso’s Helsinki forest cus-tomer service could choose the ability to purchase all timber grades as its competitive advantage. Out of nine service dimension included in the questionnaire, in this particular service dimension, Enso’s Helsinki forest customer service’s score exceeded most all organisations’ average customer satisfaction score. On the basis of importance – performance matrix, advice and quidance could have been provided more to the forest owners in their latest timber–selling transaction.

Esclavos en el reino de Toledo

Resumen: La esclavitud en la Edad Moderna supuso una realidad social muy arraigada. Último eslabón de una sociedad estamental, en este trabajo, enmarcado espacialmente en el reino de Toledo en tierras de Castilla se analizan diversos aspectos de la condición de los esclavos: descripción y aspecto físico, tipología de las causas de esclavitud, comercio de esclavos, ocupaciones y servicios a que se dedicaban, comportamiento y conflictividad social y finalmente la manumisión. Para ello se han utilizado fuentes procedentes de archivos religiosos, de la nobleza y abundante documentación notarial y judicial.

O novo pacto federativo: porque a apresentação de uma emenda possibilitou uma discussão na redefinição da Federação Brasileira

Estudo de caso que analisa a aprovação da emenda de plenário nº 387 de 2010, chamada de emenda Ibsen Pinheiro/Humberto Souto, que pretendeu redistribuir as riquezas advindas dos royalties do petróleo, a partir do estabelecimento de critérios de maior equalização como o da distribuição via Fundo de Participação de Estados e Municípios (FPE/FPM). A partir do entendimento segundo o qual tal aprovação se deu por causa da fragmentação (derrocada) do pacto federativo, dado a centralização histórica do processo de arrecadação tributária nas mãos da União, posição alcançada e motivada, diga-se de passagem, pela abdicação de Estados e Municípios do papel de principal arrecadador, se tornando atores secundários. O estudo argumenta que a principal dificuldade enfrentada pelos entes subnacionais é de ordem econômica e os desenhos constitucionais desde a promulgação da Constituição republicana de 1891, não foi capaz de dirimir tal situação. E mesmo com a promulgação da Constituição de 1988, chamada de a mais descentralizadora, uma melhor distribuição de recursos falhou em suas tentativas.

Ocupando os latifúndios do saber: subsídios para o ensino da ciência na perspectiva politécnica da educação

A presente tese tem por finalidade refletir sobre princípios pedagógico-filosóficos para o ensino da ciência na etapa intermediária da educação escolar. Considerando que tanto a prática educativa quanto a prática científica são práticas sociais mediadoras do processo de produção, e que, portanto, não se pode pensá-las fora de um método que as integre dialeticamente a partir de determinantes que estão dados no campo da economia política, procurou-se investigar aqui qual é o estatuto hoje reservado à ciência no quadro de valores introduzidos pela economia política neoliberal e os efeitos dessas mudanças sobre o que se prescreve para a formação científica no ensino médio brasileiro a partir da última reforma educacional (LDBEN/1996). Tratou-se de sublinhar aqui as conexões que foram se firmando entre os processos de universalização da forma-mercadoria e as mudanças introduzidas no regime de produção do conhecimento, que vai cada vez mais sendo moldado pelos objetivos e prescrições do capital. Tendo por referência o materialismo histórico-dialético, o objeto desta tese foi delineado de modo a refletir o processo de constituição da produção da ciência em dois âmbitos distintos: o da macro-política, presidido hegemonicamente pelas instituições ligadas ao capital, a partir da década de 1990, e o da relação epistemológica que subjaz à prática científica contemporânea, assinalando a co-relação entre estes processos e os seus nexos causais. Para dar contas destas relações, procedeu-se a uma investigação histórica e filosófica que teve por objetivo mostrar como o conceito de natureza cunhado pelas mãos dos primeiros cientistas no século XVII futura matriz da noção de ciências da natureza tal como ela é tomada hoje no currículo , assentado numa distinção fixa entre juízos de fato e juízos de valor, deve seu conteúdo a um processo que é finalmente econômico e social. Por meio desta crítica pode-se estabelecer os vínculos entre a economia política, o viés institucional da ciência e o universo da epistemologia. Concluiu-se que há uma relação necessária entre o novo registro institucional de produção do conhecimento, garantido por um estatuto regulatório afinado com as demandas do neoliberalismo, e o novo estatuto epistemológico, assinalado por uma ênfase nos pressupostos do realismo científico ingênuo. Esta relação se projeta sobre o ensino da ciência na forma de uma intensificação de seu teor tecnicista, e dentre as suas características destacamos duas: 1) o conceito de natureza, tomado no ensino das ciências como uma abstração des-historicizada; 2) o mito da unicidade científica, isto é, a crença de que só há uma ciência: a que formulará, numa linguagem única e inequívoca, a verdade do real. Para finalizar, fizemos alusão a dois programas educacionais que, a nosso ver, avançam rumo a novas formas de ensino na medida em que refletem a experiência de um grupo de educadores e alunos com os princípios da educação politécnica: o do Instituto de Educação Josué de Castro (IEJC/ITERRA) e o da Escola Politécnica de Saúde Joaquim Venâncio (EPSJV/Fiocruz).

River Yealm SAP Consultation

This is the River Yealm Salmon Action Plan Consultation document produced by the Environment Agency in 2003. The report pays attention on the external consultation of the River Yealm Salmon Action Plan (SAP). This strategy represents an entirely new approach to salmon management within the UK and introduces the concept of river-specific salmon spawning targets as a salmon management tool. The River Yealm Salmon Action Plan follows the format of those completed for the rivers Tamar, Lynher, Tavy, Camel, Fowey and Plym. It is the final one of seven action plans that will be produced for salmon rivers managed by Cornwall Area. The River Yealm SAP contains a description of the river catchment and highlights particular features that are relevant to the salmon population and the associated fishery. Notably there are potable water abstractions in the headwaters, workings for china clay on the main tributary, two inert waste landfill sites and an aggregate quarry adjacent to the main river and inputs from several Sewage Treatment Works (STW) and two industrial estates. The main River Yealm has been designated as River Ecosystem Class 1 for its water quality objectives. This is the highest water quality target set for rivers.

DETERMINATION OF THE X-CONDUCTION-SUBBAND ENERGIES IN TYPE-II GAAS/ALAS/GAAS QUANTUM-WELL BY DEEP-LEVEL TRANSIENT SPECTROSCOPY

Using deep level transient spectroscopy (DLTS) the X conduction-subband energy levels in an AlAs well sandwiched by double GaAs layers were determined. Calculation gives eight subbands in the well with well width of 50 Angstrom. Among them, five levels and the other three remainders are determined by using the large longitudinal electron effective mass m(1)(1.1m(0)) and transverse electron effective mass m(t)(0.19m(0)) at X valley, respectively. Two subbands with the height energies were hardly detectable and the other six ones with lower energies are active in the present DLTS study. Because these six subbands are close to each other, we divided them into three groups. Experimentally, we observed three signals induced from the three groups. A good agreement between the calculation and experiment was obtained. (C) 1995 American Institute of Physics.

灾难救援机器人研究现状、关键性能及展望

对日本、美国和中国等国家灾难救援机器人的研究现状和研究计划进行综述。根据世界各国救援机器人技术的研究现状,结合救援机器人在实际应用中取得的经验和教训,归纳和总结出救援机器人的关键性能为：存活能力、运动能力、感知能力、通信能力和作业能力。研究结果表明,灾难救援机器人研究逐步从试验研究转入到实际应用,多种技术融合化、多智能体网络化是今后灾难救援机器人研究的发展方向。防灾、减灾和救灾事关人民生命和财产安全,是国家公共安全的重要组成部分。救援机器人技术是国家发展迫切需要的战略必争的核心技术之一,将在国民经济和安全中起着重要作用并具有重大的战略意义。

Geomorfologiczne uwarunkowania rozwoju sieci komunikacyjnej na obszarze młodoglacjalnym (zlewnia Perznicy, Pojezierze Drawskie

The aim of the studies in the Perznica River catchment were relief changes caused by the development of transportation infrastructure. This type of transformation is dependable on the state of economy and the settlements. The development of transportation network in the last two hundred years was examined through the analysis of archival cartographic materials – maps from the years 1789, 1855, 1877, 1935 – and the comparison with the situation from mid 1980s. The Perznica River catchment has an area of 249 km2 and it is located in north-western Poland in the central part of the Drawskie Lakeland macroregion, which belongs to the West Pomeranian Lakeland. The heterogeneous Perznica River catchment relief has a denivelation of 159 m and is within 60 and 219 m a.s.l. The study area is within the Parsęta River lobe. A number of subzones, whose morphological diversity and diversity of sediments lithofacies is mainly a reflection of areal deglaciation of the continental ice-sheet marginal zone, has been distinguished and these are: • subzone of the internal kame moraine – the undulated moraine upland, diversified by kame forms and kettle holes, • subzone of ice-free space forms – the uplands of kame plateaux, • subzone of melt-out lake basins – Lake Wielatowo basin with a characteristic collar ridge, • morphological levels of the northern Pomeranian sloping surface – mainly flat moraine uplands and small outwashes. The economic development of the Perznica River catchment advanced in close connection with the physical and geographical context, mainly with the relief, soils and hydrological conditions. As a result, the flat moraine uplands and marginal outflow plains, which were easiest to cultivate, have been developed and populated faster than any other. Since the early medieval period, large, compact villages, often centered around big estates, were emerging in those areas. In areas with a high relief energy–kame-melt moraines, ice-free space forms and ridges around melt-out lake basins–farming entered on a larger scale from the eighteenth century. Scattered settlements in those areas forced the creation of a dense access road network to farms and fields. In the case of anthropogenic forms of transportation with denivelation exceeding 1 m in the study area, road excavations are present for 37.3 km, road undercuttings for 43.8 km and road embankments for 38.7 km in total length. That gives a high ratio of density of such forms, equal to 2.1 km per km–2.

Estudo sobre as medidas de intervenção social nos maus tratos ao idoso

Dissertação de Mestrado apresentada à Universidade Fernando Pessoa como parte dos requisitos para obtenção do grau de Mestre em Trabalho Social.

Ballineaspigmore and Bishopstown House

Ballineaspig, anglicised Bishopstown, consists of two townlands which are Ballineaspigmore and Ballineaspigbeg. Taken together, both townlands oc­cupy an area identifiable in modern day terms as lying approximately be­tween the old Glasheen National School on the east side and what was, until recently, the University Farm Curraheen Road on the west. A townland is the smallest administrative land division in Ireland. Historians and other scholars are as yet inconclusive about the origins of these divisions. They are certainly as old as the seventeenth century. The townland with which this booklet is concerned is known as Ballineaspigmore. It extends west from the new Regional Hospital at Wilton and includes modern housing estates such as Uam-Var, Benvoirlich and Firgrove. The simplest translation of the townland name is the large land division of the bishop. To clarify a popular misconception, Bishopstown does not derive its name from the fact that in the early eighteenth century a bishop of Cork built his country residence there. The name is much older and can be found in sources dating back to the sixteenth century.

Theme and variations: Christianity and regional landscapes in early medieval Ireland

This thesis explores the impact of Christianity on the landscape in Ireland from the conversion period to the coming of the Anglo-Normans. The premise is that ecclesiastical and secular settlement formed a cohesive whole which characterised the societal organisation of early medieval Ireland. The matter of the thesis is to isolate some of the agents of cohesion to see was this homogenous or did it vary in different areas. One of these agents was the ownership of land and the thesis undertakes to identify ecclesiastical landholding and examine the manner of settlement on it. A corollary is to explore the contribution of the genealogical link between kin-group, founding saint and territory to the construction of local identities. This necessitated a narrow focus; thus small study areas were chosen, which approximated to early medieval kingdoms in North Louth, Rathdown, Co Dublin and Ross, Co Cork. A multidisciplinary approach was taken using both archaeological and documentary evidence. The thesis found ecclesiastical sites were at the same density through the study areas, but there were considerable regional variations in related secular settlement. Ecclesiastical estates were identified in the three study areas and common settlement patterns were found in two of them. Settlement in all areas indicated the foundation of minor churches by local groups. Ecclesiastical sites were found to be integral to kin-group identity and status, but the manner in which each group negotiated this, was very different. Finally the thesis examined material evidence for a change from diffused to concentrated power in the political organisation of Irish society, a process entwined with developments of the Viking Age. This centralisation of power and associated re-formation of identity was still often mediated through the ecclesiastical sphere but the thesis demonstrates diversity in the materialising of the mediation.