Molecular mechanism by which the nucleoid occlusion factor, SlmA, keeps cytokinesis in check.

In Escherichia coli, cytokinesis is orchestrated by FtsZ, which forms a Z-ring to drive septation. Spatial and temporal control of Z-ring formation is achieved by the Min and nucleoid occlusion (NO) systems. Unlike the well-studied Min system, less is known about the anti-DNA guillotining NO process. Here, we describe studies addressing the molecular mechanism of SlmA (synthetic lethal with a defective Min system)-mediated NO. SlmA contains a TetR-like DNA-binding fold, and chromatin immunoprecipitation analyses show that SlmA-binding sites are dispersed on the chromosome except the Ter region, which segregates immediately before septation. SlmA binds DNA and FtsZ simultaneously, and the SlmA-FtsZ structure reveals that two FtsZ molecules sandwich a SlmA dimer. In this complex, FtsZ can still bind GTP and form protofilaments, but the separated protofilaments are forced into an anti-parallel arrangement. This suggests that SlmA may alter FtsZ polymer assembly. Indeed, electron microscopy data, showing that SlmA-DNA disrupts the formation of normal FtsZ polymers and induces distinct spiral structures, supports this. Thus, the combined data reveal how SlmA derails Z-ring formation at the correct place and time to effect NO.

The Olive Tree, Vol. 12 Number 1, 2004

The Summer 2004 issue of The Olive Tree features articles about library projects, collections, technological innovations, and events at Fogler Library, University of Maine.

Geochemistry of ODP Site 131-808 muds and mudstones

The principal aims of undertaking a shore-based bulk inorganic geochemical analysis of muds and mudstones from Site 808 were as follows: 1. Characterize the geochemical signature of the muds and mudstones at regular intervals downhole to sample and identify any changes in sediment type and provenance. 2. Integrate the inorganic geochemistry with the shipboard and more detailed land-based laboratory studies of the clay minerals. 3. Investigate any possible inorganic geochemical anomalies associated with the décollement.

Age determination of sediment cores from the Panama Basin

High-resolution percent Corg and delta18Oforam records obtained from Panama Basin core Atlantis II 54-25PC and additional data from nearby core P7 show that enhanced burial of organic carbon has characterized every major glacial period for the last 500 kyr in that area. Both Corg concentration and mass accumulation rate profiles exhibit a sawtooth pattern with maxima occurring typically in the later stages of glacial periods. Comparison with dust records suggests that the carbon accumulation rate profile reflects both the upwelling history and a variable rate of iron input during the late Quaternary. The sawtooth character may derive from increased wind velocities and rates of upwelling during glacials which are indirectly related to ice volume (Sarnthein et al., 1988). The rapid decline in export production at the end of glacials in the equatorial Pacific may be attributed to the retreat of ice sheets (thus reduced wind velocities and upwelling) coupled with a coincident decline in atmospheric dust load and/or delivery rate. The Corg accumulation rate profiles do not correlate well with atmospheric CO2 records. For example, atmospheric CO2 was already at a minimum 40 kyr ago when production in the Panama Basin began increasing dramatically, commensurate with an increase in global dust levels. Using the relationship between the degree of photosynthetic fractionation and the concentration of free CO2 in the surface ocean postulated by Popp et al. (1989), delta13Corg measurements made on core P7 show that Panama Basin surface waters have been supplying CO2 to the atmosphere continually for at least the last 50 kyr. There is no evidence for a flux of CO2 into the surface ocean in this area at any time during this period despite the higher production. If the Panama Basin cores are representative of the eastern and central equatorial Pacific, then these observations weaken the influence on CO2 drawdown postulated for increased glacial productivity at low latitudes.

Inorganic major, minor, and trace element geochemistry and clay mineralogy of sediments from the Deep Sea Drilling Project Leg 96, Gulf of Mexico

Sediment samples collected at DSDP Leg 96 Mississippi Fan Sites 615, 616, 620, 621, and 623, Orca Basin Site 618, and Pigmy Basin Site 619 were analyzed for 22 major, minor, and trace elements. This study was undertaken to document the downhole variability in inorganic geochemistry between sites. The mineralogy of the clays, including those from Sites 614, 617, and 622 on the fan, was determined by X-ray diffraction to define the principal clay minerals present at the sites, examine any downhole trends in clay mineralogy, and aid in the interpretation of the geochemical signature of the sediments. Clay mineral composition at all the sites is smectite:illite:chlorite:kaolinite in the approximate percentage ratio 50:20:20:10. Geochemical results indicate only slight variation between and within the sites, with the exception of a discrete unit of carbonates that occurs near the bottom of Site 615. Variation in the major, minor, and trace element composition can be explained by a change in the relative abundance of quartz, clay minerals, and carbonates.