CDC PC station guide: tutorial

This is a walkthrough guide to install a fresh CDC PC Station on the Flexible Manufacturing Field Trial.

Towards a GIS-T database design and implementation for public transit planning: the case study of Dar-Es-salaam metropolitan city, Tanzania.

Dissertation submitted in partial fulfilment of the requirements for the Degree of Master of Science in Geospatial Technologies

INbreast: Toward a Full-field Digital Mammographic Database

Rationale and Objectives Computer-aided detection and diagnosis (CAD) systems have been developed in the past two decades to assist radiologists in the detection and diagnosis of lesions seen on breast imaging exams, thus providing a second opinion. Mammographic databases play an important role in the development of algorithms aiming at the detection and diagnosis of mammary lesions. However, available databases often do not take into consideration all the requirements needed for research and study purposes. This article aims to present and detail a new mammographic database. Materials and Methods Images were acquired at a breast center located in a university hospital (Centro Hospitalar de S. João [CHSJ], Breast Centre, Porto) with the permission of the Portuguese National Committee of Data Protection and Hospital's Ethics Committee. MammoNovation Siemens full-field digital mammography, with a solid-state detector of amorphous selenium was used. Results The new database—INbreast—has a total of 115 cases (410 images) from which 90 cases are from women with both breasts affected (four images per case) and 25 cases are from mastectomy patients (two images per case). Several types of lesions (masses, calcifications, asymmetries, and distortions) were included. Accurate contours made by specialists are also provided in XML format. Conclusion The strengths of the actually presented database—INbreast—relies on the fact that it was built with full-field digital mammograms (in opposition to digitized mammograms), it presents a wide variability of cases, and is made publicly available together with precise annotations. We believe that this database can be a reference for future works centered or related to breast cancer imaging.

Uma cultura de colaboração entre professores e bibliotecários: a orientação tutorial de estudantes de radiologia em Moçambique

O sucesso da aquisição de competências de literacia da informação no ensino superior garante-se através do trabalho colaborativo entre bibliotecários e professores. Em janeiro de 2015, uma equipa composta por uma professora de radiologia, uma professora de estatística e uma bibliotecária deslocaram-se a Maputo, em Moçambique, para uma missão de capacitação de docentes em metodologias de investigação aplicadas à saúde e de orientação tutorial para estudantes de radiologia no Instituto Superior de Ciências de Saúde. As sessões de formação foram desenhadas com a preocupação de criar oportunidades reais de discussão e de aprofundamento de questões colocadas pelos formandos. Os resultados finais revelaram que os formandos gostariam de ter mais formação em softwares de estatística (SPSS), testes estatísticos, análise de dados qualitativos, técnicas de amostragem com mais exemplos práticos, plataformas de pesquisa de informação em saúde sobre radiologia, tecnologias de informação e comunicação, metodologia de investigação científica, como elaborar um protocolo de investigação e questionários, bem como mais informação sobre como citar e referenciar. Evidencia-se que a missão da Biblioteca deve ser alterada e alargada à comunidade académica, assumindo esta o seu papel no processo de tutoria na investigação.

Implementation of a new reference values database for semiquantification in123I-FP-CIT brain single emission tomography

Brain dopamine transporters imaging by Single Emission Tomography (SPECT) with 123I-FP-CIT (DaTScanTM) has become an important tool in the diagnosis and evaluation of Parkinson syndromes.This diagnostic method allows the visualization of a portion of the striatum – where healthy pattern resemble two symmetric commas - allowing the evaluation of dopamine presynaptic system, in which dopamine transporters are responsible for dopamine release into the synaptic cleft, and their reabsorption into the nigrostriatal nerve terminals, in order to be stored or degraded. In daily practice for assessment of DaTScan TM, it is common to rely only on visual assessment for diagnosis. However, this process is complex and subjective as it depends on the observer’s experience and it is associated with high variability intra and inter observer. Studies have shown that semiquantification can improve the diagnosis of Parkinson syndromes. For semiquantification, analysis methods of image segmentation using regions of interest (ROI) are necessary. ROIs are drawn, in specific - striatum - and in nonspecific – background – uptake areas. Subsequently, specific binding ratios are calculated. Low adherence of semiquantification for diagnosis of Parkinson syndromes is related, not only with the associated time spent, but also with the need of an adapted database of reference values for the population concerned, as well as, the examination of each service protocol. Studies have concluded, that this process increases the reproducibility of semiquantification. The aim of this investigation was to create and validate a database of healthy controls for Dopamine transporters with DaTScanTM named DBRV. The created database has been adapted to the Nuclear Medicine Department’s protocol, and the population of Infanta Cristina’s Hospital located in Badajoz, Spain.

Validation of a new reference values’s database for semiquantification of 123I‐FP‐CIT SPECT scans in one nuclear medicine department

The DatScanTM and its Semiquantification (SQ) can provide advantages in the diagnosis of Parkinsonian Syndromes (PS). To improve the SQ is recommended the creation of adapted database (DB) with reference values for the Nuclear Medicine Departments. Previously to this work was created a adapted database (DBRV) to Nuclear Medicine Department's protocol and population of Infanta Cristina's Hospital located in Badajoz, for patients between the ages of 60 and 75, and reference values of the SQ were calculated. Aim: To evaluate the discrimination capacity of a department's adapted DB reference's values of healthy controls for DatScanTM.

PBL in healthcare sciences: a case study on curriculum innovation

Students of a Cardiopulmonary Sciences curriculum in a Portuguese higher education institution have shown poor learning outcomes and low satisfaction on a course about lung function tests. A transmissive pedagogical approach, mainly based on lectures, was the common teaching practice. Aiming for a change, PBL was considered as a powerful alternative and also as a contribution for progressively innovating the curriculum. Purpose: to create PBL activities in a lung function tests course. to describe their implementation, to analyse the effects of PBL integration in students’ performance and attitudes, to characterize the generated learning environment.

Cooperative memory and database transactions

Dissertação apresentada na Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa para a obtenção do Grau de Mestre em Engenharia Informática

Towards a flexible and transparent database evolution

Applications refactorings that imply the schema evolution are common activities in programming practices. Although modern object-oriented databases provide transparent schema evolution mechanisms, those refactorings continue to be time consuming tasks for programmers. In this paper we address this problem with a novel approach based on aspect-oriented programming and orthogonal persistence paradigms, as well as our meta-model. An overview of our framework is presented. This framework, a prototype based on that approach, provides applications with aspects of persistence and database evolution. It also provides a new pointcut/advice language that enables the modularization of the instance adaptation crosscutting concern of classes, which were subject to a schema evolution. We also present an application that relies on our framework. This application was developed without any concern regarding persistence and database evolution. However, its data is recovered in each execution, as well as objects, in previous schema versions, remain available, transparently, by means of our framework.

Evolution of the application and database with aspects

Generally, the evolution process of applications has impact on their underlining data models, thus becoming a time-consuming problem for programmers and database administrators. In this paper we address this problem within an aspect-oriented approach, which is based on a meta-model for orthogonal persistent programming systems. Applying reflection techniques, our meta-model aims to be simpler than its competitors. Furthermore, it enables database multi-version schemas. We also discuss two case studies in order to demonstrate the advantages of our approach.

Ostracoda: database for the Neogene of Portugal

The "Ostracoda: database for the Neogene of Portugal", prepared under the Project "POCTl/36531/PAL/2000 - Studies on Portuguese Palaeontology / Post-Paleozoic", is presented. It provides information about 158 especies that have been recognized in sections and boreholes concerning Neogene units in Portugal.

Armazéns de dados em bases de dados NoSQL

Na atualidade, existe uma quantidade de dados criados diariamente que ultrapassam em muito as mais otimistas espectativas estabelecidas na década anterior. Estes dados têm origens bastante diversas e apresentam-se sobre várias formas. Este novo conceito que dá pelo nome de Big Data está a colocar novos e rebuscados desafios ao seu armazenamento, tratamento e manipulação. Os tradicionais sistemas de armazenamento não se apresentam como a solução indicada para este problema. Estes desafios são alguns dos mais analisados e dissertados temas informáticos do momento. Várias tecnologias têm emergido com esta nova era, das quais se salienta um novo paradigma de armazenamento, o movimento NoSQL. Esta nova filosofia de armazenamento visa responder às necessidades de armazenamento e processamento destes volumosos e heterogéneos dados. Os armazéns de dados são um dos componentes mais importantes do âmbito Business Intelligence e são, maioritariamente, utilizados como uma ferramenta de apoio aos processos de tomada decisão, levados a cabo no dia-a-dia de uma organização. A sua componente histórica implica que grandes volumes de dados sejam armazenados, tratados e analisados tendo por base os seus repositórios. Algumas organizações começam a ter problemas para gerir e armazenar estes grandes volumes de informação. Esse facto deve-se, em grande parte, à estrutura de armazenamento que lhes serve de base. Os sistemas de gestão de bases de dados relacionais são, há algumas décadas, considerados como o método primordial de armazenamento de informação num armazém de dados. De facto, estes sistemas começam a não se mostrar capazes de armazenar e gerir os dados operacionais das organizações, sendo consequentemente cada vez menos recomendada a sua utilização em armazéns de dados. É intrinsecamente interessante o pensamento de que as bases de dados relacionais começam a perder a luta contra o volume de dados, numa altura em que um novo paradigma de armazenamento surge, exatamente com o intuito de dominar o grande volume inerente aos dados Big Data. Ainda é mais interessante o pensamento de que, possivelmente, estes novos sistemas NoSQL podem trazer vantagens para o mundo dos armazéns de dados. Assim, neste trabalho de mestrado, irá ser estudada a viabilidade e as implicações da adoção de bases de dados NoSQL, no contexto de armazéns de dados, em comparação com a abordagem tradicional, implementada sobre sistemas relacionais. Para alcançar esta tarefa, vários estudos foram operados tendo por base o sistema relacional SQL Server 2014 e os sistemas NoSQL, MongoDB e Cassandra. Várias etapas do processo de desenho e implementação de um armazém de dados foram comparadas entre os três sistemas, sendo que três armazéns de dados distintos foram criados tendo por base cada um dos sistemas. Toda a investigação realizada neste trabalho culmina no confronto da performance de consultas, realizadas nos três sistemas.

Geospatial database generation from digital newspapers: use case for risk and disaster domains.

Dissertation submitted in partial fulfilment of the requirements for the Degree of Master of Science in Geospatial Technologies.

Analysis of early synthetic dyes with HPLC-DAD-MS: an important database for analysis of colorants used in cultural heritage

Presented thesis at Faculdade de Ciências e Tecnologias, Universidade de Lisboa, to obtain the Master Degree in Conservation and Restoration of Textiles

Database repairs with answer set programming

Dissertação para obtenção do Grau de Mestre em Engenharia Informática