Estudios estructurales y funcionales de la glucogenina

Glucogenina es el nombre asignado a la proteína de 38 kDa que se encuentra unida covalentemente al glucógeno y que inicia la biosíntesis de navo del polisacárido. El aporte del grupo en el tema comprende: la identificación en retina bovina de fracciones de a-1,4- glucanoproteína distinguibles por su solubilidad e insolubilidad en ácido tricloroacético; la demostración de que el glucógeno posee proteína covalentemente unida al glucano; la identificación del arninoácido involucrado en la unión proteína-polisacárido; la caracterización de la fracción de glucógeno insoluble en ácido tricloroacético corno proteoglucógeno; la descripción de proteoglucógeno asociado a membranas microsomales en retina; la demostración de que en organismos primitivos como Neuraspara crassa y Escherichia coli el glucógeno se halla covalentemente unido a una proteína de 31 kDa que llamamos M-glucogenina; que no es reconocida por anticuerpo policlonal anti-glucogenina de 38 kDa de mamífero, y cuya secuencia de diez aminoácidos del extremo N-terminal es distinta a la de la glucogenina de 38 kDa. El objetivo general está dirigido a interrogantes acerca de aspectos estructurales funcionales de la glucogenia, la proteína de 38 kDa que se encuentra unida covalentemente al glucógeno y que inicia la biosíntesis de novo del polisacárido. Dentro del aspecto funcional la pregunta fundamental es si la vía que se inicia con la glucogenina y termina con proteoglucógeno constituye la única alternativa para la biosíntesis del glucógeno celular. Con respecto al aspecto estructural, el mecanismo involucrado en su actividad autoglucosiltransferasa acapara la atención, tanto en lo referente a la identificación del sitio o sitios activos responsable(s) de la formación de uniones glucosil-a-l,4-glucosa como en lo referente a la causa determinante de la incorporación de no mas de ocho a once glucosas, formando un oligoglucano lineal unido al residuo tirosina 194 que actuará como primer de la glucógeno sintetasa.

Genetic characterization of morphologically variant strains of Paracoccidioides brasiliensis

Molecular characterization of Paracoccidioides brasiliensis variant strains that had been preserved under mineral oil for decades was carried out by random amplified polymorphic DNA analysis (RAPD). On P. brasiliensis variants in the transitional phase and strains with typical morphology, RAPD produced reproducible polymorphic amplification products that differentiated them. A dendrogram based on the generated RAPD patterns placed the 14 P. brasiliensis strains into five groups with similarity coefficients of 72%. A high correlation between the genotypic and phenotypic characteristics of the strains was observed. A 750 bp-RAPD fragment found only in the wild-type phenotype strains was cloned and sequenced. Genetic similarity analysis using BLASTx suggested that this RAPD marker represents a putative domain of a hypothetical flavin-binding monooxygenase (FMO)-like protein of Neurospora crassa.

Revision of the neotropical species of empididae (Diptera) described by Mario Bezzi: IX. The species described in Atrichopleura Bezzi and the description of a new species

Revision of the Neotropical species of Empididae (Diptera) described by Mario Bezzi. IX. The species described in Atrichopleura Bezzi and the description of a new species. Four Neotropical species of Empididae described by Bezzi in Atrichopleura Bezzi, 1909 are redescribed: A. crassa (lectotype, pres. desig.), A. hirtipes (lectotype, pres. desig.), A. nitida (lectotype, pres. desig.), A. schnusei (lectotype, pres. desig.). Atrichopleura bezzii sp. nov. is described from among syntypes of A. schnusei.

Cobre total en organismos bentónicos y su relación con acciones antrópicas y naturales

Se estudió la bioacumulación de cobre total en organismos bentónicos como, moluscos y crustáceos, en la bahía de Huarmey y se relacion�� con las acciones naturales y antrópicas que ocurren en ella. El objetivo fue conocer qué organismo bentónico bioacumula cobre total en mayor cantidad para justificar su propuesta como organismo centinela de éste metal. Tomando como base las capturas de organismos bentónicos realizadas por buceo en el periodo 2006 al 2012, complementadas con muestras de sedimento marino, sedimento de río y agua de río se determin�� cobre total mediante espectrofotometría de absorción atómica en horno de grafito. Las mayores concentraciones media de cobre total se encontraron en crustáceos y moluscos, como el “cangrejo peludo,” Cancer setosus (MOLINA, 1782) (110,70 μg/g), el “caracol negro,” Stramonita chocolata (DUCLOS, 1832) (108,79 μg/g), la “lapa,” Fisurella crassa (LAMARCK, 1822) (99,52 μg/g), el “caracol turbante,” Tegula atra (LESSON, 1830) (88,27 μg/g), el “caracol rosado,” Bursa ventricosa (BRODERIP, 1833) (78,54 μg/g) y el“cangrejo violáceo,” Platyxanthus orbignyi (H. MILNE EDWARS Y LUCAS, 1843) (46,30 μg/g). La concentración de cobre total en el caracol negro se relaciona con las concentraciones de cobre total en el sedimento marino, en el sedimento de río y en el agua de río. La ecuación de regresión lineal múltiple evidenció dicha asociación (R=0,998).

Din��mica de populações de espécies lenhosas de Cerrado, Balsas, Maranhão

Este trabalho objetivou investigar a din��mica populacional de 12 espécies lenhosas de Cerrado sentido restrito. O estudo foi executado nas áreas de reserva legal (fragmentos 1 e 2) do Projeto de Colonização Gerais de Balsas, no sul do Maranhão, no período de 1995 a 2002. A maioria das espécies estudadas apresentou distribuição de freqüência dos indivíduos nas classes de diâmetro em forma de J invertido, característica de populações auto-regenerativas. As populações das espécies Byrsonima coccolobifolia, Sclerolobium paniculatum e Vochysia rufa, no fragmento 1, e B. coccolobifolia, Byrsonima crassa, Davilla elliptica e Qualea parviflora, no fragmento 2, destacaram-se por apresentar altas taxas de recrutamento que compensaram as elevadas taxas de mortalidade. Os maiores valores de incremento em diâmetro foram registrados nas espécies B. crassa, Q. parviflora, S. paniculatum e V. rufa, em ambos os fragmentos. As espécies que apresentaram alto recrutamento e alto incremento em diâmetro provavelmente permanecerão ocupando posição de destaque na estrutura da comunidade. No entanto, as populações das espécies Connarus suberosus, D. elliptica, Hirtella ciliata e Erythroxylum deciduum, no fragmento 1, e Salvertia convallariaeodora, no fragmento 2, n��o mostraram altas taxas de recrutamento e podem ter sua sobrevivência comprometida no futuro, caso as tendências detectadas neste estudo permaneçam.

Diversidade e índice sucessional de uma vegetação de cerrado sensu stricto na Universidade Estadual de Goiás-UEG, campus de An��polis

A composição vegetal, estrutura, diversidade, estádio sucessional e distribuição de espécies do cerrado do campus da UEG com 6 ha, foram inventariados usando 30 parcelas com 100 m² cada. A partir de dbs superior ou igual a 5 cm foram amostrados 515 indivíduos, representados por 20 famílias, 28 gêneros e 46 espécies. As famílias de maior riqueza foram Leguminosae, Vochysiaceae e Malpighiaceae. As espécies Qualea grandiflora, Byrsonima crassa, Erytroxylum tortuosum, Qualea parviflora e Miconia ferruginata apresentaram os maiores VIs. A diversidade da área (H¢ = 1,353) é menor que valores descritos para Cerrado, o que pode ser conseqüência tanto da abundância de espécies como Q. grandiflora e B. crasssa quanto de interferências antrópicas no local, incluindo queimadas. O valor do índice sucessional (IS = 2,3) indica uma comunidade em estágio intermediário de sucessão, já que seu valor oscila de 1 a 3 . A comunidade ajustou-se apenas ao modelo log-normal, o que, de acordo com a literatura, pode ser influência da proporção da abundância de espécies dominantes, intermediárias e raras.

Aquatic Hyphomycetes in the Parque Estadual das Fontes do Ipiranga - PEFI, São Paulo, Brazil

In the State Park Parque Estadual das Fontes do Ipiranga - PEFI, located in the city of São Paulo, samples of submerged mixed leaf litter were collected monthly from 10 sites with different levels of eutrophication, from October 2003 to April 2005. Some abiotic factors, such as pH, temperature, conductivity and dissolved oxygen were simultaneously measured in 20 cm deep water at each site. The leaf litter samples were washed in laboratory, cut into 1 cm² pieces and incubated in Petri dishes containing distilled sterile water for five to seven days at 15 °C to 20 °C. Twenty-four aquatic Hyphomycete species were identified, with predominance of Anguillospora crassa Ingold, Lunulospora curvula Ingold, Tetrachaetum elegans Ingold and Camposporium pellucidum (Grove) Hughes. First reports for South America are: Anguillospora filiformis Greathead, Dendrospora erecta Ingold and Pyramidospora casuarinae Nilsson. These species, as well as Tetracladium setigerum (Grove) Ingold, Tricladium splendens Ingold and Varicosporium elodeae Kegel, are reported for the first time in Brazil. According to the multivariate analysis, the occurrence of the aquatic Hyphomycetes was mainly influenced by the trophic level of the aquatic environments.

Os gêneros Chaetomorpha Kütz. nom. cons. e Rhizoclonium Kütz. (Chlorophyta) do litoral do Estado da Bahia, Brasil

O presente trabalho refere-se ao estudo taxon��mico dos gêneros Chaetomorpha e Rhizoclonium ocorrentes no litoral da Bahia. As espécies foram delimitadas com base no hábito, presen��a ou ausência de rizóides laterais, tipo de célula basal, forma e dimensões celulares. A presen��a de inclusões cristalinas nas células também foi verificada. Foram identificadas nove espécies, sete para o gênero Chaetomorpha (C. aerea (Dillwyn) Kütz., C. antennina (Bory) Kütz., C. brachygona Harv., C. clavata Kütz., C. crassa (C. Agardh) Kütz., C. minima Collins & Herv. e C. nodosa Kütz.) e duas para o gênero Rhizoclonium (R. africanum Kütz. and R. riparium (Roth) Kütz. ex Harv.). Chaetomorpha crassa, C. minima e C. nodosa são novas adições para o litoral nordeste do Brasil e C. aerea, C. clavata e R. africanum são adições para o litoral da Bahia. Três tipos de cristais foram encontrados: 1. cristais de sílica, em forma de finas agulhas agrupadas, presentes em C. aerea, C. antennina, C. brachygona, C. clavata e C. crassa; 2. cristais de oxalato de cálcio, em forma de octaedros, encontrados em C. antennina e C. clavata e, 3. cristais de carbonato de cálcio, em forma de cones formando agregados globosos, observados em C. clavata. Talos férteis de C. antennina, C. clavata, C. nodosa, R. africanum e R. riparium são ilustrados pela primeira vez para o Brasil. Descrições detalhadas das estruturas vegetativas e reprodutivas das espécies e comparações com táxons afins são apresentadas.

Planktonic diatoms in lotic and lentic environments in the Lago dos Tigres hydrologic system (Britânia, Goiás, Brazil): Coscinodiscophyceae and Fragilariophyceae

A floristic study of Coscinodiscophyceae and Fragilariophyceae in the Lago dos Tigres hydrologic system is presented. Phytoplankton samples were collected with a plankton net (25 µm mesh) at 11 sampling stations, three in lotic areas and eight in lacustrine zones. Eleven species of Coscinodiscophyceae and eight of Fragilariophyceae were identified; descriptions, comments, their geographic distributions for the midwestern region of Brazil, type of environment (lentic/lotic), and illustrations are provided. Among the taxa found, 13 were recorded for the first time in midwestern Brazil: Aulacoseira alpigena, A. distans, A. granulata var. angustissima, A. granulata var. valida, A. muzzanensis, Discostella stelligera var. stelligera, Fragilaria capucina var. fragilarioides, F. delicatissima var. delicatissima, F. javanica, Pleurosira laevis, Staurosira acutirostrata, Staurosirella crassa, and Ulnaria ulna.

Searching for the role of protein phosphatases in eukaryotic microorganisms

Preference for specific protein substrates together with differential sensitivity to activators and inhibitors has allowed classification of serine/threonine protein phosphatases (PPs) into four major types designated types 1, 2A, 2B and 2C (PP1, PP2A, PP2B and PP2C, respectively). Comparison of sequences within their catalytic domains has indicated that PP1, PP2A and PP2B are members of the same gene family named PPP. On the other hand, the type 2C enzyme does not share sequence homology with the PPP members and thus represents another gene family, known as PPM. In this report we briefly summarize some of our studies about the role of serine/threonine phosphatases in growth and differentiation of three different eukaryotic models: Blastocladiella emersonii, Neurospora crassa and Dictyostelium discoideum. Our observations suggest that PP2C is the major phosphatase responsible for dephosphorylation of amidotransferase, an enzyme that controls cell wall synthesis during Blastocladiella emersonii zoospore germination. We also report the existence of a novel acid- and thermo-stable protein purified from Neurospora crassa mycelia, which specifically inhibits the PP1 activity of this fungus and mammals. Finally, we comment on our recent results demonstrating that Dictyostelium discoideum expresses a gene that codes for PP1, although this activity has never been demonstrated biochemically in this organism.

Identification of a new human mtDNA polymorphism (A14290G) in the NADH dehydrogenase subunit 6 gene

Leber's hereditary optic neuropathy (LHON) is a maternally inherited form of retinal ganglion cell degeneration leading to optic atrophy in young adults. Several mutations in different genes can cause LHON (heterogeneity). The ND6 gene is one of the mitochondrial genes that encodes subunit 6 of complex I of the respiratory chain. This gene is a hot spot gene. Fourteen Persian LHON patients were analyzed with single-strand conformational polymorphism and DNA sequencing techniques. None of these patients had four primary mutations, G3460A, G11788A, T14484C, and G14459A, related to this disease. We identified twelve nucleotide substitutions, G13702C, T13879C, T14110C, C14167T, G14199T, A14233G, G14272C, A14290G, G14365C, G14368C, T14766C, and T14798C. Eleven of twelve nucleotide substitutions had already been reported as polymorphism. One of the nucleotide substitutions (A14290G) has not been reported. The A14290G nucleotide substitution does not change its amino acid (glutamic acid). We looked for base conservation using DNA star software (MEGALIGN program) as a criterion for pathogenic or nonpathogenic nucleotide substitution in A14290G. The results of ND6 gene alignment in humans and in other species (mouse, cow, elegans worm, and Neurospora crassa mold) revealed that the 14290th base was not conserved. Fifty normal controls were also investigated for this polymorphism in the Iranian population and two had A14290G polymorphism (4%). This study provides evidence that the mtDNA A14290G allele is a new nonpathogenic polymorphism. We suggest follow-up studies regarding this polymorphism in different populations.

Qualidade fisiológica de sementes de beterraba (Beta vulgaris L.) sob condicionamento osmótico e tratamentos fungicidas

O condicionamento osmótico e o tratamento de sementes com fungicidas têm apresentado bons resultados na melhoria do vigor e proteção das plântulas contra patógenos associados às sementes e de solo, garantindo assim bom estabelecimento do estande. Objetivou-se com este trabalho, avaliar o efeito do condicionamento osmótico e do tratamento com fungicidas sobre a qualidade fisiológica de sementes de beterraba (Beta vulgaris L.). As sementes foram condicionadas em água, KNO³ (0,34 M) e PEG 6000 (-0,8 MPa). Os tratamentos com fungicidas foram: testemunha (sementes tratadas pela empresa produtora de sementes com Thiran a 0,15%), metalaxil (0,004%), procimidone (0,1%) e metalaxil + procimidone (0,004 + 0,1%). Avaliaram-se as seguintes características: primeira contagem, contagem no oitavo dia e final pelo teste de germinação; emergência, velocidade de emergência e índice de velocidade de emergência em substrato comercial e em solo. Adotou-se o delineamento inteiramente casualizado, esquema fatorial (condicionamento x tratamento com fungicidas), com quatro repetições, realizando-se a comparação de médias pelo teste Duncan a 5% de probabilidade. O condicionamento das sementes em água por 16h, associado com o tratamento com o fungicida Metalaxil (0,004%), proporciona melhores resultados no teste de germinação e no estabelecimento de plântulas em solo.

Supercomplexes multifonctionnels chez les mitochondries, et chez E. coli

Les processus mitochondriaux tels que la réplication et la traduction sont effectués par des complexes multiprotéiques. Par contre, le métabolisme et la voie de maturation des ARN mitochondriaux (p. ex précurseurs des ARNt et des ARNr) sont habituellement traités comme une suite de réactions catalysées par des protéines séparées. L’exécution fidèle et optimale de ces processus mitochondriaux, exige un couplage étroit n��cessaire pour la canalisation des intermédiaires métaboliques. Or, les évidences en faveur de l'interconnexion postulée de ces processus cellulaires sont peu nombreuses et proviennent en grande partie des interactions protéine-protéine. Contrairement à la perception classique, nos résultats révèlent l’organisation des fonctions cellulaires telles que la transcription, la traduction, le métabolisme et la régulation en supercomplexes multifonctionnels stables, dans les mitochondries des champignons (ex Saccharomyces cerevisiae, Aspergillus nidulans et Neurospora crassa), des animaux (ex Bos taurus), des plantes (B. oleracea et Arabidopsis thaliana) et chez les bactéries (ex E. coli) à partir desquelles les mitochondries descendent. La composition de ces supercomplexes chez les champignons et les animaux est comparable à celle de levure, toutefois, chez les plantes et E. coli ils comportent des différences notables (ex, présence des enzymes spécifiques à la voie de biosynthèse des sucres et les léctines chez B. oleracea). Chez la levure, en accord avec les changements dûs à la répression catabolique du glucose, nos résultats révèlent que les supercomplexes sont dynamiques et que leur composition en protéines dépend des stimulis et de la régulation cellulaire. De plus, nous montrons que l’inactivation de la voie de biosynthèse des lipides de type II (FASII) perturbe l’assemblage et/ou la biogen��se du supercomplexe de la RNase P (responsable de la maturation en 5’ des précurseurs des ARNt), ce qui suggère que de multiples effets pléiotropiques peuvent être de nature structurale entre les protéines. Chez la levure et chez E. coli, nos études de la maturation in vitro des précurseurs des ARNt et de la protéomique révèlent l’association de la RNase P avec les enzymes de la maturation d’ARNt en 3’. En effet, la voie de maturation des pré-ARNt et des ARNr, et la dégradation des ARN mitochondriaux semblent êtres associées avec la machinerie de la traduction au sein d’un même supercomplexe multifonctionnel dans la mitochondrie de la levure. Chez E. coli, nous avons caractérisé un supercomplexe similaire qui inclut en plus de la RNase P: la PNPase, le complexe du RNA degradosome, l’ARN polymérase, quatre facteurs de transcription, neuf aminoacyl-tRNA synthétases, onze protéines ribosomiques, des chaperons et certaines protéines métaboliques. Ces résultats supposent l’association physique de la transcription, la voie de maturation et d’aminoacylation des ARNt, la dégradation des ARN. Le nombre de cas où les activités cellulaires sont fonctionnellement et structurellement associées est certainement à la hausse (ex, l’éditosome et le complexe de la glycolyse). En effet, l’organisation en supercomplexe multifonctionnel représente probablement l’unité fonctionnelle dans les cellules et les analyses de ces super-structures peuvent devenir la prochaine cible de la biologie structurale.

Evidence of a Ca(2+)-(center dot)NO-cGMP signaling pathway controlling zoospore biogenesis in the aquatic fungus Blastocladiella emersonii

The sporulation stage of the aquatic fungus Blastocladiella emersonii culminates with the formation and release to the medium of a number of zoospores, which are motile cells responsible for the dispersal of the fungus. The presence in the sporulation solution of 1H-[1,2,4]Oxadiazolo[4,3-a]quinoxalin-1-one (ODQ), a potent and selective inhibitor of nitric oxide-sensitive guanylyl cyclases, completely prevented biogenesis of the zoospores. In addition, this compound was able to significantly reduce cGMP levels, which increase drastically during late sporulation, suggesting the existence of a nitric oxide-dependent mechanism for cGMP synthesis. Furthermore, increased levels of nitric oxide-derived products were detected during sporulation by fluorescence assays using DAF-2 DA, whose signal was drastically reduced in the presence of the nitric oxide synthase inhibitor N omega-Nitro-L-arginine methyl ester (L-NAME). These results were confirmed by quantitative chemiluminescent determination of the intracellular levels of nitric oxide-derived products. A putative nitric oxide synthase (NOS) activity was detected throughout sporulation, and this enzyme activity decreased significantly when L-NAME and 1-[2-(Trifluoromethyl)phenyl]imidazole (TRIM) were added to the assays. NOS assays carried out in the presence of EGTA showed decreased enzyme activity, suggesting the involvement of calcium ions in enzyme activation. Additionally, expressed sequence tags (ESTs) encoding putative guanylyl cyclases and a cGMP-phosphodiesterase were found in B. emersonii EST database (http://blasto.iq.usp.br), and the mRNA levels of the corresponding genes were observed to increase during sporulation. Altogether, data presented here revealed the presence and expression of guanylyl cyclase and cGMP phosphodiesterase genes in B. emersonii and provided evidence of a Ca(2+)-(center dot)NO-cGMP signaling pathway playing a role in zoospore biogenesis. (C) 2009 Elsevier Inc. All rights reserved.

Global Gene Expression Analysis during Germination in the Chytridiomycete Blastocladiella emersonii

Blastocladiella emersonii is an aquatic fungus of the Chytridiomycete class. During germination, the zoospore, a motile nongrowing cell, goes through a cascade of morphological changes that culminates with its differentiation into the germling cell, capable of coenocytic vegetative growth. Transcriptome analyses of B. emersonii cells were carried out during germination induced under various environmental conditions. Microarray data analyzing 3,563 distinct B. emersonii genes revealed that 26% of them are differentially expressed during germination in nutrient medium at at least one of the time points investigated. Over 500 genes are upregulated during the time course of germination under those conditions, most being related to cell growth, including genes involved in protein biosynthesis, DNA transcription, energetic metabolism, carbohydrate and oligopeptide transport, and cell cycle control. On the other hand, several transcripts stored in the zoospores are downregulated during germination in nutrient medium, such as genes involved in signal transduction, amino acid transport, and chromosome organization. In addition, germination induced in the presence of nutrients was compared with that triggered either by adenine or potassium ions in inorganic salt solution. Several genes involved in cell growth, induced during germination in nutrient medium, do not show increased expression when B. emersonii zoospores germinate in inorganic solution, suggesting that nutrients exert a positive effect on gene transcription. The transcriptome data also revealed that most genes involved in cell signaling show the same expression pattern irrespective of the initial germination stimulus.