Population Variation and Genetic Control of Modular Chromatin Architecture in Humans.

Chromatin state variation at gene regulatory elements is abundant across individuals, yet we understand little about the genetic basis of this variability. Here, we profiled several histone modifications, the transcription factor (TF) PU.1, RNA polymerase II, and gene expression in lymphoblastoid cell lines from 47 whole-genome sequenced individuals. We observed that distinct cis-regulatory elements exhibit coordinated chromatin variation across individuals in the form of variable chromatin modules (VCMs) at sub-Mb scale. VCMs were associated with thousands of genes and preferentially cluster within chromosomal contact domains. We mapped strong proximal and weak, yet more ubiquitous, distal-acting chromatin quantitative trait loci (cQTL) that frequently explain this variation. cQTLs were associated with molecular activity at clusters of cis-regulatory elements and mapped preferentially within TF-bound regions. We propose that local, sequence-independent chromatin variation emerges as a result of genetic perturbations in cooperative interactions between cis-regulatory elements that are located within the same genomic domain.

Are we modular lying cues detectors ? The answer is "yes sometimes"

We quickly form first impressions about newly encountered people guiding our subsequent behaviour (approach, avoidance). Such instant judgments might be innate and automatic, being performed unconsciously and independently to other cognitive processes. Lying detection might be subject to such a modular process. Unfortunately, numerous studies highlighted problems with lying detection paradigms such as high error rates and learning effects. Additionally, humans should be motivated doing both detecting others' lies and dis- guising own lies. Disguising own lies might even be more challenging than detecting other people's lies. Thus, when trying to disguise cheating behaviour, liars might display a mixture of disguising (fake) trust cues and uncontrolled lying cues making the interpretation of the expression difficult (perceivers are guessing). In two consecutive online studies, we tested whether seeing an increasing amount (range 0-4) of lying cues (LC) and non-lying cues (NLC) on a standard face results in enhanced guessing behaviour (studies 1 and 2) and that enhanced guessing is accompanied by slower responding (study 2). Results showed that pronounced guessing and slowest responding occurred for faces with an intermediate number and not with the highest number of LC and NLC. In particular, LC were more impor- tant than NLC to uncertain lying decisions. Thus, only a few LC may interfere with automatic processing of lying detection (irrespective of NLC), probably because too little lying cue information is yet available.

Tissue-specific regulatory circuits reveal variable modular perturbations across complex diseases.

Mapping perturbed molecular circuits that underlie complex diseases remains a great challenge. We developed a comprehensive resource of 394 cell type- and tissue-specific gene regulatory networks for human, each specifying the genome-wide connectivity among transcription factors, enhancers, promoters and genes. Integration with 37 genome-wide association studies (GWASs) showed that disease-associated genetic variants-including variants that do not reach genome-wide significance-often perturb regulatory modules that are highly specific to disease-relevant cell types or tissues. Our resource opens the door to systematic analysis of regulatory programs across hundreds of human cell types and tissues (http://regulatorycircuits.org).

Interfície gràfica per a la valoració d'operadors de preprocessat d'imatge en imatges d'ultrasò

El càncer de mama és una de les causes de més mortalitat entreles dones dels països desenvolupats. És tractat d'una maneramés eficient quan es fa una detecció precoç, on les tècniques d'imatge són molt importants. Una de les tècniques d'imatge més utilitzades després dels raigs-X són els ultrasons. A l'hora de fer un processat d'imatges d'ultrasò, els experts en aquest camp es troben amb una sèrie de limitacions en el moment d'utilitzar uns filtrats per les imatges, quan es fa ús de determinades eines. Una d'aquestes limitacions consisteix en la falta d'interactivitat que aquestes ens ofereixen. Per tal de solventar aquestes limitacions, s'ha desenvolupat una eina interactiva que permet explorar el mapa de paràmetres visualitzant el resultat del filtrat en temps real, d'una manera dinàmica i intuïtiva. Aquesta eina s'ha desenvolupat dins l'entorn de visualització d'imatge mèdica MeVisLab. El MeVisLab és un entorn molt potent i modular pel desenvolupament d'algorismes de processat d'imatges, visualització i mètodes d'interacció, especialment enfocats a la imatge mèdica. A més del processament bàsic d'imatges i de mòduls de visualització, inclou algorismes avançats de segmentació, registre i moltes análisis morfològiques i funcionals de les imatges.S'ha dut a terme un experiment amb quatre experts que, utilitzantl'eina desenvolupada, han escollit els paràmetres que creien adientsper al filtrat d'una sèrie d'imatges d'ultrasò. En aquest experiments'han utilitzat uns filtres que l'entorn MeVisLab ja té implementats:el Bilateral Filter, l'Anisotropic Difusion i una combinació d'un filtrede Mediana i un de Mitjana.Amb l'experiment realitzat, s'ha fet un estudi dels paràmetres capturats i s'han proposat una sèrie d'estimadors que seran favorables en la majoria dels casos per dur a terme el preprocessat d'imatges d'ultrasò

The modular forming press for paperboard packages

In this master’s thesis the structural and functional features of a forming tool are developed to meet the needs of modern packaging production for paperboard packaging are studied. The goal of the study is to develop a new type of machine for the manufacture of the paperboard package by pressing. In the structure of the developed forming press the possibility to modify the packaging as well as the requirements of industrial production, food hygiene and other operational matters are accounted for. The press has been sized based on the main dimensions of a single food-grade paperboard tray. In the LUT Packaging Laboratory the forming press is designed suitable for on-line operation. In addition, suggestions for further development of packaging line and equipment have been made based on the information gathered during this thesis study.

Cost estimation framework for modular product

Cost estimation is an important, but challenging process when designing a new product or a feature of it, verifying the product prices given by suppliers or planning a cost saving actions of existing products. It is even more challenging when the product is highly modular, not a bulk product. In general, cost estimation techniques can be divided into two main groups - qualitative and quantitative techniques - which can further be classified into more detailed methods. Generally, qualitative techniques are preferable when comparing alternatives and quantitative techniques when cost relationships can be found. The main objective of this thesis was to develop a method on how to estimate costs of internally manufactured and commercial elevator landing doors. Because of the challenging product structure, the proposed cost estimation framework is developed under three different levels based on past cost information available. The framework consists of features from both qualitative and quantitative cost estimation techniques. The starting point for the whole cost estimation process is an unambiguous, hierarchical product structure so that the product can be classified into controllable parts and is then easier to handle. Those controllable parts can then be compared to existing past cost knowledge of similar parts and create as accurate cost estimates as possible by that way.

Experiència dels cuidadors i les cuidadores principals informals que tenen cura d'un familiar vell amb demència des de fa més de quatre anys

El treball que es presenta vol respondre la pregunta de quina és l’experiència dels cuidadors i les cuidadores principals informals que tenen cura d’un familiar vell amb demència des de fa més de 4 anys. Després de plantejar les hipòtesis de partida, es defineixen els objectius generals i específics i s’expliquen l’interès, la justificació, la rellevància i l’aportació d’aquest estudi. En l’apartat corresponent a l’estat de la qüestió i la fonamentació conceptual, després de fer una revisió bibliogràfica, es descriuen els elements que formen part d’aquesta temàtica: perfils dels receptors de cures i de les cuidadores, significat de tenir cura, vida quotidiana i qualitat de vida i descripció del model conceptual de Virginia Henderson. En el capítol següent s’exposen la metodologia, el paradigma i el mètode d’investigació utilitzats en aquest treball, així com les matrius d’anàlisi del contingut i del discurs. A partir d’aquí s’exposen els resultats en funció dels objectius plantejats. En la discussió, s’analitzen i s’interpreten les dades obtingudes i es contraposen amb altres estudis, a més de fer-se una reflexió personal sobre els aprenentatges adquirits i una proposta de línies de treball futures. A continuació s’exposen unes conclusions per resumir la informació obtinguda. En la secció de referències bibliogràfiques es detallen les fonts consultades, i en els annexos hi consten els models d’entrevista i de matriu per a l’anàlisi de dades, el full de consentiment informat, així com el buidatge i l’anàlisi de les entrevistes.

Desenvolvimento e testes de uma semeadora-adubadora modular para pequenas propriedades rurais

O trabalho apresenta o desenvolvimento e testes de campo de equipamento agrícola modular. Para o desenvolvimento do equipamento, foi utilizada metodologia de projeto para sistemas modulares. O objetivo principal foi desenvolver um sistema modular que contribuísse para melhorar o atual quadro de mecanização agrícola da pequena propriedade rural, enfocando alguns dos equipamentos destinados às atividades conservacionistas de cultivo. Por ser modular, o equipamento atende às funções de semear-adubar, escarificar e sulcar o solo. Para a função semear-adubar, podem ser usados cinzéis e disco duplo para a semeadura; já para as funções de escarificação e sulcagem, podem ser usadas ferramentas específicas, facilmente intercambiadas em um chassi tubular principal. Os resultados para solo argiloso (Typic Oxisols), com umidade em torno de 20,5% e massa seca de 11,5 t ha-1 para a variante semeadora-adubadora com duplo cinzel, foram satisfatórios com relação aos parâmetros de patinagem das rodas motoras, regularidade de distribuição em profundidade, cobertura das sementes, distribuição longitudinal das sementes e emergência de plantas.

Avaliação do desempenho de dois sistemas modulares no tratamento anaeróbio de esgotos em comunidades rurais

Este trabalho apresenta uma alternativa de baixo custo e fácil instalação para o tratamento de esgotos de pequenas comunidades. O experimento foi desenvolvido no Campo Experimental da Faculdade de Engenharia Agrícola (FEAGRI/UNICAMP). O volume total de esgoto gerado na FEAGRI é de cerca de 20 m³ dia-1, sendo metade desse tratado pelos sistemas modulares. O sistema da linha (A) é constituído por um reator UASB (Upflow Anaerobic Sludge Blanket), seguido de dois filtros anaeróbios e o outro sistema, linha (B), é constituído por um reator tipo RAC (Reator Anaeróbio Compartimentado), seguido de dois filtros anaeróbios (FA). Os sistemas foram operados de dezembro de 2002 a fevereiro de 2004, totalizando 30 coletas de amostras. Observou-se que, de maneira geral, o desempenho dos sistemas foram similares e com resultados satisfatórios. As eficiências médias de remoção de Sólidos Sedimentáveis, Sólidos Suspensos Totais e DQO, observadas no sistema modular da Linha (A), foram, respectivamente, 99,58%; 94,33% e 67,30%. O sistema modular da Linha (B) apresentou remoção de 99,49%; 93,34% e 70,45% para os mesmos parâmetros. Os sistemas modulares mostraram-se adequados e viáveis para promover o tratamento sanitário do esgoto produzido em pequenas comunidades.

Influência do tempo de uso sobre as características hidráulicas do microaspersor do grupo modular

O desenvolvimento de novos equipamentos de irrigação e o aprimoramento dos já existentes, como dos microaspersores, devem considerar a avaliação das características hidráulicas, disposição adequada dos mesmos em condições de campo e interferência devido ao tempo de uso, garantindo índices de desempenho satisfatório. Nesse contexto, este trabalho teve o objetivo de determinar a equação vazão x pressão, o coeficiente de variação de fabricação - CVf e de vazão - CVq, a uniformidade de distribuição de água para diferentes graus de sobreposição do microaspersor do grupo modular de bocal laranja, novo e usado, sob funcionamento na posição invertida. O aumento do espaçamento entre microaspersores e entre laterais reduziu os índices de uniformidade em todas as pressões estudadas, tanto do microaspersor novo como do usado. A maior precipitação do jato de água ocorreu na distância de 0,0 a 1,0 m da haste de sustentação dos microaspersores novo e usado. O alcance do jato de água do microaspersor usado foi menor em relação ao bocal novo.

Licensing Model Development for Small Modular Reactors (SMRs) - Focusing on the Finnish Regulatory Framework

Recently, Small Modular Reactors (SMRs) have attracted increased public discussion. While large nuclear power plant new build projects are facing challenges, the focus of attention is turning to small modular reactors. One particular project challenge arises in the area of nuclear licensing, which plays a significant role in new build projects affecting their quality as well as costs and schedules. This dissertation - positioned in the field of nuclear engineering but also with a significant section in the field of systems engineering - examines the nuclear licensing processes and their suitability for the characteristics of SMRs. The study investigates the licensing processes in selected countries, as well as other safety critical industry fields. Viewing the licensing processes and their separate licensing steps in terms of SMRs, the study adopts two different analysis theories for review and comparison. The primary data consists of a literature review, semi-structured interviews, and questionnaire responses concerning licensing processes and practices. The result of the study is a recommendation for a new, optimized licensing process for SMRs. The most important SMR-specific feature, in terms of licensing, is the modularity of the design. Here the modularity indicates multi-module SMR designs, which creates new challenges in the licensing process. As this study focuses on Finland, the main features of the new licensing process are adapted to the current Finnish licensing process, aiming to achieve the main benefits with minimal modifications to the current process. The application of the new licensing process is developed using Systems Engineering, Requirements Management, and Project Management practices and tools. Nuclear licensing includes a large amount of data and documentation which needs to be managed in a suitable manner throughout the new build project and then during the whole life cycle of the nuclear power plant. To enable a smooth licensing process and therefore ensure the success of the new build nuclear power plant project, management processes and practices play a significant role. This study contributes to the theoretical understanding of how licensing processes are structured and how they are put into action in practice. The findings clarify the suitability of different licensing processes and their selected licensing steps for SMR licensing. The results combine the most suitable licensing steps into a new licensing process for SMRs. The results are also extended to the concept of licensing management practices and tools.

Modular framework for outlier detection

Outlier detection is an important form of data analysis because outliers in several cases contain the interesting and important pieces of information. In the recent years, many different outlier detection algorithms have been devised for finding different kinds of outliers in varying contexts and environments. Some effort has been put to study how to effectively combine different outlier detection methods. The combination of outlier detection algorithms as an ensemble was studied in this thesis by designing a modular framework for outlier detection, which combines arbitrary outlier detection techniques. This work resulted in an example implementation of the framework. Outlier detection capability of the ensemble method was validated using datasets and methods found in outlier detection research. The framework achieved better results than the individual outlier algorithms. Future research includes how to handle large datasets effectively and the possibilities for real-time outlier monitoring.

Open Access Research Data Repository for Corpus Linguistic Data – A Modular Approach

Presentation at Open Repositories 2014, Helsinki, Finland, June 9-13, 2014

Mechanical design and analysis of modular active magnetic bearing test rig

Tässä työssä on tutkittu modulaarisen aktiivimagneettilaakeroidun koelaitteen mekaanista suunnittelua ja analysointia. Suurnopeusroottorin suunnittelun teoria on esitelty. Lisäksi monia analyyttisiä mallinnusmenetelmiä mekaanisten kuormitusten mallintamiseksi on esitelty. Koska kyseessä on suurnopeussähkökone, roottoridynamiikka ja sen soveltuvuus suunnittelussa on esitelty. Magneettilaakerien rakenteeseen ja toimintaan on tutustuttu osana tätä työtä. Kirjallisuuskatsaus nykyisistä koelaitteista esimerkiksi komponenttien ominaisuuksien tunnistamiseen ja roottoridynamiikan tutkimuksiin on esitelty. Työn rajauksena on konseptisuunnittelu muunneltavalle magneettilaakeroidulle (AMB) koelaitteelle ja suunnitteluprosessin dokumentointi. Muunneltavuuteen päädyttiin, koska se mahdollistaa erilaisten komponenttiasetteluiden testaamisen erilaisille magneettilaakerikokoonpanoille ja roottoreille. Pääpaino tässä työssä on suurnopeus induktiokoneen roottorin suunnittelussa ja mallintamisessa. Modulaaristen toimilaitteiden kuten magneettilaakerien ja induktiosähkömoottorin rakenne on esitelty ja modulaarisen rakenteen käytettävyyden hyödyistä koelaitekäytössä on dokumentoitu. Analyyttisiä ja elementtimenetelmään perustuvia tutkimusmenetelmiä on käytetty tutkittaessa suunniteltua suurnopeusroottoria. Suunnittelun ja analysoinnin tulokset on esitelty ja verrattu keskenään eri mallinnusmenetelmien välillä. Lisäksi johtopäätökset sähkömagneettisten osien liittämisen monimutkaisuudesta ja vaatimuksista roottoriin ja toimilaitteisiin sekä mekaanisten että sähkömagneettisten ominaisuuksien optimoimiseksi on dokumentoitu.

Horizontal projections of area 17 in Cebus monkeys: metric features, and modular and laminar distribution

Metric features and modular and laminar distributions of intrinsic projections of area 17 were studied in Cebus apella. Anterogradely and retrogradely labeled cell appendages were obtained using both saturated pellets and iontophoretic injections of biocytin into the operculum. Laminar and modular distributions of the labeled processes were analyzed using Nissl counterstaining, and/or cytochrome oxidase and/or NADPH-diaphorase histochemistry. We distinguished three labeled cell types: pyramidal, star pyramidal and stellate cells located in supragranular cortical layers (principally in layers IIIa, IIIb FACE="Symbol">a, IIIb ß and IIIc). Three distinct axon terminal morphologies were found, i.e., Ia, Ib and II located in granular and supragranular layers. Both complete and partial segregation of group I axon terminals relative to the limits of the blobs of V1 were found. The results are compatible with recent evidence of incomplete segregation of visual information flow in V1 of Old and New World primates