Vykopirovka na uchastok "Kon-Kinchakskiǐ" fond otvedennyǐ v pol'zovanie Komzeta iz Kol-Alchinskoǐ dachi razverstani︠ia︡

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Vykopirovka s plana Semi-Kolodez︠ia︡nskoĭ dachi Kerchenskogo raĭona Oĭsulskogo proizvod. uchastka

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Inhibition of type IA topoisomerase by a monoclonal antibody through perturbation of DNA cleavage-religation equilibrium

Type IA DNA topoisomerases, typically found in bacteria, are essential enzymes that catalyse the DNA relaxation of negative supercoils. DNA gyrase is the only type II topoisomerase that can carry out the opposite reaction (i.e. the introduction of the DNA supercoils). A number of diverse molecules target DNA gyrase. However, inhibitors that arrest the activity of bacterial topoisomerase I at low concentrations remain to be identified. Towards this end, as a proof of principle, monoclonal antibodies that inhibit Mycobacterium smegmatis topoisomerase I have been characterized and the specific inhibition of Mycobacterium smegmatis topoisomerase I by a monoclonal antibody, 2F3G4, at a nanomolar concentration is described. The enzyme-bound monoclonal antibody stimulated the first transesterification reaction leading to enhanced DNA cleavage, without significantly altering the religation activity of the enzyme. The stimulated DNA cleavage resulted in perturbation of the cleavagereligation equilibrium, increasing single-strand nicks and proteinDNA covalent adducts. Monoclonal antibodies with such a mechanism of inhibition can serve as invaluable tools for probing the structure and mechanism of the enzyme, as well as in the design of novel inhibitors that arrest enzyme activity.

Type IA topoisomerase inhibition by clamp closure

Bacterial DNA topoisomerase I (topoI) catalyzes relaxation of negatively supercoiled DNA. The enzyme alters DNA topology through protein-operated DNA gate, switching between open and closed conformations during its reaction. We describe the mechanism of inhibition of Mycobacterium smegmatis and Mycobacterium tuberculosis topoI by monoclonal antibodies (mAbs) that bind with high affinity and inhibit at 10-50 nM concentration. Unlike other inhibitors of topoisomerases, the mAbs inhibited several steps of relaxation reaction, namely DNA binding, cleavage, strand passage, and enzyme-DNA dissociation. The enhanced religation of the cleaved DNA in presence of the mAb indicated closing of the enzyme DNA gate. The formation of enzyme-DNA heterocatenane in the presence of the mAbs as a result of closing the gate could be inferred by the salt resistance of the complex, visualized by atomic force microscopy and confirmed by fluorescence measurements. Locking the enzyme-DNA complex as a closed clamp restricted the movements of the DNA gate, affecting all of the major steps of the relaxation reaction. Enzyme trapped on DNA in closed clamp conformation formed roadblock for the elongating DNA polymerase. The unusual multistep inhibition of mycobacterial topoisomerases may facilitate lead molecule development, and the mAbs would also serve as valuable tools to probe the enzyme mechanism.

In a hot bubble: why does superbubble feedback work, but isolated supernovae do not?

Using idealized one-dimensional Eulerian hydrodynamic simulations, we contrast the behaviour of isolated supernovae with the superbubbles driven by multiple, collocated supernovae. Continuous energy injection via successive supernovae exploding within the hot/dilute bubble maintains a strong termination shock. This strong shock keeps the superbubble over-pressured and drives the outer shock well after it becomes radiative. Isolated supernovae, in contrast, with no further energy injection, become radiative quite early (less than or similar to 0.1Myr, tens of pc), and stall at scales less than or similar to 100 pc. We show that isolated supernovae lose almost all of their mechanical energy by 1 Myr, but superbubbles can retain up to similar to 40 per cent of the input energy in the form of mechanical energy over the lifetime of the star cluster (a few tens of Myr). These conclusions hold even in the presence of realistic magnetic fields and thermal conduction. We also compare various methods for implementing supernova feedback in numerical simulations. For various feedback prescriptions, we derive the spatial scale below which the energy needs to be deposited in order for it to couple to the interstellar medium. We show that a steady thermal wind within the superbubble appears only for a large number (greater than or similar to 10(4)) of supernovae. For smaller clusters, we expect multiple internal shocks instead of a smooth, dense thermalized wind.

Supernovae explosions induced by pair production instability

Stars with a core mass greater than about 30 M_⊙ become dynamically unstable due to electron-positron pair production when their central temperature reaches 1.5-2.0 x 10^{9 0}K. The collapse and subsequent explosion of stars with core masses of 45, 52, and 60 M_⊙ is calculated. The range of the final velocity of expansion (3,400 – 8,500 km/sec) and of the mass ejected (1 – 40 M_⊙) is comparable to that observed for type II supernovae.

An implicit scheme of hydrodynamic difference equations (stable for large time steps) used for the calculation of the evolution is described.

For fast evolution the turbulence caused by convective instability does not produce the zero entropy gradient and perfect mixing found for slower evolution. A dynamical model of the convection is derived from the equations of motion and then incorporated into the difference equations.

"Se meu pai viesse aqui hoje nessa escola, ele não ia aprender": Cibercultura e processos de ensino-aprendizagem

A sociedade na qual vivemos vem passando por grandes transformações que influenciam os modos de construir conhecimentos e veicular informações, as formas de se relacionar com o outro, a maneira de perceber o mundo e a si mesmo no mundo. Estas mudanças são marcadas pela interatividade, pela conectividade, pela velocidade, pela multilinearidade, pela complexidade e pela fragmentação tão presentes na cultura digital. Os jovens, nascidos em meio a estas transformações, vivenciam essas marcas em suas práticas culturais cotidianas, construindo uma nova lógica que orienta seu modo de perceber e agir na sociedade. No entanto, ao mesmo tempo em que os jovens orientam suas ações a partir dessa lógica que chamo nesse trabalho de cibercultural, vivenciam uma lógica linear na escola, o que acaba por produzir um hiato entre as culturas juvenis e a cultura escolar. Buscando contribuir para a construção de práticas pedagógicas mais concernentes às necessidades dos jovens contemporâneos, este estudo se propôs investigar o papel mediador das tecnologias digitais nos processos de ensino-aprendizagem. O estudo foi desenvolvido em uma escola de Ensino Médio Integrado, na zona norte do Rio de Janeiro, na qual os alunos têm acesso, em período integral, às disciplinas do currículo do MEC integradas às disciplinas de formação técnica voltadas às tecnologias digitais. Este projeto é fruto de uma parceria da Secretaria de Educação do Estado do Rio de Janeiro com um instituto privado, cujo objetivo é construir um espaço de pesquisa e de inovações em educação. A pesquisa se configurou como um estudo de caso, embora algumas reflexões possam contribuir para debates mais amplos em educação. O estudo apoiou-se teórico-metodologicamente nos Estudos Culturais Latino-americanos (Martín-Barbero e Canclini), que trazem contribuições para pensar o papel das mediações nos processos de recepção dos meios comunicacionais. Baseia-se, também, nos estudos sobre juventude (Dayrell e Carrano) que ajudaram a construir um olhar para os jovens pesquisados a partir do lugar ativo e protagonista de suas práticas dentro e fora da escola. Complementando estes aportes teóricos, o trabalho se fundamenta, ainda, nos estudos sobre a relação dos sujeitos com os ambientes virtuais ou ciberculturais (Lévy, Lemos e Santaella). As entrevistas realizadas com jovens e professores da escola e as observações em sala de aula foram exercícios de alteridade e exotopia, inspirados em Mikhail Bakhtin. O trabalho foi tecido numa perspectiva dialógica, buscando trazer para o texto impresso as experiências vividas no campo e os debates desencadeados a partir dessas experiências, propondo alguns caminhos para contribuir com uma escola mais significativa aos novos tempos.

The upstream enhancer elements of the G6PC promoter are critical for optimal G6PC expression in murine glycogen storage disease type Ia.

Glycogen storage disease type-Ia (GSD-Ia) patients deficient in glucose-6-phosphatase-α (G6Pase-α or G6PC) manifest impaired glucose homeostasis characterized by fasting hypoglycemia, growth retardation, hepatomegaly, nephromegaly, hyperlipidemia, hyperuricemia, and lactic acidemia. Two efficacious recombinant adeno-associated virus pseudotype 2/8 (rAAV8) vectors expressing human G6Pase-α have been independently developed. One is a single-stranded vector containing a 2864-bp of the G6PC promoter/enhancer (rAAV8-GPE) and the other is a double-stranded vector containing a shorter 382-bp minimal G6PC promoter/enhancer (rAAV8-miGPE). To identify the best construct, a direct comparison of the rAAV8-GPE and the rAAV8-miGPE vectors was initiated to determine the best vector to take forward into clinical trials. We show that the rAAV8-GPE vector directed significantly higher levels of hepatic G6Pase-α expression, achieved greater reduction in hepatic glycogen accumulation, and led to a better toleration of fasting in GSD-Ia mice than the rAAV8-miGPE vector. Our results indicated that additional control elements in the rAAV8-GPE vector outweigh the gains from the double-stranded rAAV8-miGPE transduction efficiency, and that the rAAV8-GPE vector is the current choice for clinical translation in human GSD-Ia.

Luminous blue variables as the progenitors of supernovae with quasi-periodic radio modulations

The interaction between supernova ejecta and circumstellar matter, arising from previous episodes of mass loss, provides us with a means of constraining the progenitors of supernovae. Radio observations of a number of supernovae show quasi-periodic deviations from a strict power-law decline at late times. Although several possibilities have been put forward to explain these modulations, no single explanation has proven to be entirely satisfactory. Here we suggest that Luminous blue variables undergoing S-Doradus type variations give rise to enhanced phases of mass loss that are imprinted on the immediate environment of the exploding star as a series of density enhancements. The variations in mass loss arise from changes in the ionization balance of Fe, the dominant ion that drives the wind. With this idea, we find that both the recurrence timescale of the variability and the amplitude of the modulations are in line with the observations. Our scenario thus provides a natural, single-star explanation for the observed behaviour that is, in fact, expected on theoretical grounds.

Type II-P supernovae as standardized candles: improvements using near-infrared data

We present the first near-infrared Hubble diagram for Type II-P supernovae (SNe), to further explore their value as distance indicators. We use a modified version of the standardized candle method, which relies on the tight correlation between the absolute magnitudes of Type II-P SNe and their expansion velocities during the plateau phase. Although our sample contains only 12 II-P SNe and they are necessarily local (z

SN 2005 gj: evidence for LBV supernovae progenitors?

There is mounting observational evidence in favour of Luminous Blue Variables (LBVs) being the direct progenitors of supernovae. Here we present possibly the most convincing evidence yet for such progenitors. We find multiple absorption component P-Cygni profiles of hydrogen and helium in the spectrum of SN 2005gj, which we interpret as being an imprint of the progenitor's mass-loss history. Such profiles have previously only been detected in Luminous Blue Variables. This striking resemblance of the profiles, along with wind velocities and periods consistent with those of LBVs leads us to connect SN 2005gj to an LBV progenitor.