Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees

The theoretical impacts of anthropogenic habitat degradation on genetic resources have been well articulated. Here we use a simulation approach to assess the magnitude of expected genetic change, and review 31 studies of 23 neotropical tree species to assess whether empirical case studies conform to theory. Major differences in the sensitivity of measures to detect the genetic health of degraded populations were obvious. Most studies employing genetic diversity (nine out of 13) found no significant consequences, yet most that assessed progeny inbreeding (six out of eight), reproductive output (seven out of 10) and fitness (all six) highlighted significant impacts. These observations are in line with theory, where inbreeding is observed immediately following impact, but genetic diversity is lost slowly over subsequent generations, which for trees may take decades. Studies also highlight the ecological, not just genetic, consequences of habitat degradation that can cause reduced seed set and progeny fitness. Unexpectedly, two studies examining pollen flow using paternity analysis highlight an extensive network of gene flow at smaller spatial scales (less than 10 km). Gene flow can thus mitigate against loss of genetic diversity and assist in long-term population viability, even in degraded landscapes. Unfortunately, the surveyed studies were too few and heterogeneous to examine concepts of population size thresholds and genetic resilience in relation to life history. Future suggested research priorities include undertaking integrated studies on a range of species in the same landscapes; better documentation of the extent and duration of impact; and most importantly, combining neutral marker, pollination dynamics, ecological consequences, and progeny fitness assessment within single studies.

Optimal sampling strategy for estimation of spatial genetic structure in tree populations

Fine-scale spatial genetic structure (SGS) in natural tree populations is largely a result of restricted pollen and seed dispersal. Understanding the link between limitations to dispersal in gene vectors and SGS is of key interest to biologists and the availability of highly variable molecular markers has facilitated fine-scale analysis of populations. However, estimation of SGS may depend strongly on the type of genetic marker and sampling strategy (of both loci and individuals). To explore sampling limits, we created a model population with simulated distributions of dominant and codominant alleles, resulting from natural regeneration with restricted gene flow. SGS estimates from subsamples (simulating collection and analysis with amplified fragment length polymorphism (AFLP) and microsatellite markers) were correlated with the 'real' estimate (from the full model population). For both marker types, sampling ranges were evident, with lower limits below which estimation was poorly correlated and upper limits above which sampling became inefficient. Lower limits (correlation of 0.9) were 100 individuals, 10 loci for microsatellites and 150 individuals, 100 loci for AFLPs. Upper limits were 200 individuals, five loci for microsatellites and 200 individuals, 100 loci for AFLPs. The limits indicated by simulation were compared with data sets from real species. Instances where sampling effort had been either insufficient or inefficient were identified. The model results should form practical boundaries for studies aiming to detect SGS. However, greater sample sizes will be required in cases where SGS is weaker than for our simulated population, for example, in species with effective pollen/seed dispersal mechanisms.

Chloroplast and total genomic diversity in the endemic Costa Rican tree Lonchocarpus costaricensis (J.D. Smith) Pittier (Papilionaceae).

In Mesoamerica, tropical dry forest is a highly threatened habitat, and species endemic to this environment are under extreme pressure. The tree species, Lonchocarpus costaricensis is endemic to the dry northwest of Costa Rica and southwest Nicaragua. It is a locally important species but, as land has been cleared for agriculture, populations have experienced considerable reduction and fragmentation. To assess current levels and distribution of genetic diversity in the species, a combination of chloroplast-specific (cpDNA) and whole genome DNA markers (amplified fragment length polymorphism, AFLP) were used to fingerprint 121 individual trees in 6 populations. Two cpDNA haplotypes were identified, distributed among populations such that populations at the extremes of the distribution showed lowest diversity. A large number (487) of AFLP markers were obtained and indicated that diversity levels were highest in the two coastal populations (Cobano, Matapalo, H = 0.23, 0.28 respectively). Population differentiation was low overall, F-ST = 0.12, although Matapalo was strongly differentiated from all other populations (F-ST = 0.16-0.22), apart from Cobano (F., = 0.11). Spatial genetic structure was present in both datasets at different scales: cpDNA was structured at a range-wide distribution scale, whilst AFLP data revealed genetic neighbourhoods on a population scale. In general, the habitat degradation of recent times appears not to have yet impacted diversity levels in mature populations. However, although no data on seed or saplings were collected, it seems likely that reproductive mechanisms in the species will have been affected by land clearance. It is recommended that efforts should be made to conserve the extant genetic resource base and further research undertaken to investigate diversity levels in the progeny generation.

Regional and population-scale influences on genetic diversity partitioning within costa rican populations of the pioneer tree Vochysia ferruginea mart.

The neotropical pioneer species Vochysia ferruginea is locally important for timber and is being increasingly exploited. The sustainable utilisation of this species would benefit from an understanding of the level and partitioning of genetic diversity within remnant and secondary regrowth populations. We used data from total genome (amplified fragment length polymorphism, AFLP) and chloroplast genome markers to assay diversity levels within seven Costa Rican populations. Significant chloroplast differentiation between Atlantic and Pacific watersheds was observed, suggesting divergent historical origins for these populations. Contemporary gene flow, though extensive, is geographically constrained and a clear pattern of isolation by distance was detectable when an inter-population distance representing gene flow around the central Costa Rican mountain range was used. Overall population differentiation was low (F-ST = 0.15) and within-population diversity high, though variable (H-s=0.16-0.32), which fits with the overall pattern of population genetic structure expected for a widespread, outcrossed tropical tree. However genetic diversity was significantly lower and differentiation higher for recently colonised and disturbed populations compared to that at more established sites. Such a pattern seems indicative of a pioneer species undergoing repeated cycles of colonisation and succession.

A forgalomban lévő fásszárú dísznövénytaxonok szárazságtűrésének értékelése a klímaváltozás tükrében (Evaluation of the impact climate change on current drought-tolerant woody plants)

Regionális klímaváltozási forgatókönyvek szerint hazánk éghajlata az elkövetkező 90 évben a mainál jóval melegebb, a nyári évszakban csapadékszegényebb, összességében pedig szárazabb lesz. Kutatásunk célja volt felmérni szárazságtűrésük szerint a legjelentősebb faiskolák katalógusában fellelhető fa- és cserjefajokat (a gyűjtésben nem szerepelnek a faj alatti taxonok). A vizsgálatainkban szereplő öt faiskola növénykínálatát a tudományos nevek ellenőrzése után összesítettük, majd ezt követően az egyes fajokat vízigény szerinti kategóriákba soroltuk. A tényleges statisztikai értékelésbe – a 451 összegyűjtött faj tudományos neveinek ellenőrzése után – 420 fajt vontunk be, melyek 20%-a vízigényes, 53%-a közepesen vízigényes és 27%-a szárazságtűrő. Várakozásainkkal ellentétben a vízigényes fajok részaránya kevésnek mondható, ugyanakkor a szárazságtűrő fajok magasabb aránya kívánatos lenne. Ezért, a gyakorlati alkalmazást elősegítve, kiemeltünk olyan nemzetségeket, melyek kereskedelmi forgalmazását meg kellene kezdeni vagy fokozni, mint pl a Cupressus, Eucommia, Halimodendron, Paliurus, Pyrus, Rhus, Yucca Zanthoxylum, Zelkova, illetve olyanokat, melyek telepítését a jövőben nem, vagy csak kellő körültekintéssel javasoljuk, mint például a Clematis, Hydrangea, Liquidambar, Magnolia, Rhododendron nemzetségek. _____ According to regional climate change scenarios, the climate in Hungary will be warmer. Less precipitation is predicted in the summer seasons so, on the whole, it will be drier over the next 90 years. Our research attempted to survey the ornamental plant species in the most important nurseries in Hungary, in terms of their drought tolerance. The intraspecifi c taxa are not included. The plant assortment of the fi ve nurseries was merged after researching their scientifi c names. We then categorized species to 3 groups of drought tolerance. Out of 451 species, 420 of them were used in the statistical research. 20% of them were water demanding, 53% were medium drought tolerant and 27% were drought tolerant. In contrast to our initial expectation, the proportion of water demanding species was not too high. Nevertheless, the proportion of drought tolerant species should have been greater. We classifi ed the genera to assist in practical application. The trade of some of these species, such as Cupressus, Eucommia, Halimodendron, Paliurus, Pyrus, Rhus, Yucca, Zanthoxylum, Zelkova should be initiated or increased in the future. Other species, especially Clematis, Hydrangea, Liquidambar, Magnolia, Rhododendron are not recommended due to either their drought intolerance or their high maintenance requirement.

Crecimiento del Schizolobium parahyba var. amazonicum cultivado en presencia de Ananas comosus var. erectifolius en Pará, Brasil.

El incremento en la perturbación ambiental y la presión mundial para preservar la selva amazónica han fomentado el cultivo de especies nativas. Con el objetivo de evaluar el crecimiento de Schizolobium parahyba var. amazonicum (Huber ex Ducke) barneby cultivado en presencia de componentes agrícolas como Ananas comosus var. erectifolius, se desarrolló un estudio en la Estación Experimental de la empresa Tramontina Belem S.A., ubicada en la Ciudad de Aurora do Pará (PA), Brasil. El diseño experimental fue factorial de bloques completos al azar con parcelas subdivididas en el tiempo, para que los arreglos formaron los tratamientos de la parcela y las subparcelas fueron el tiempo de observación, con seis tratamientos y cuatro repeticiones: 1) S. parahyba var. amazonicum, Cordia goeldiana y Switenia macrophylla:GLC; 2) S. parahyba var. amazonicum, C. goeldiana, S. macrophylla y A. comosus var. erectifolius: GLCc; 3) S. parahyba var. amazonicum y C. goeldiana: GL; 4) S. parahyba var. amazonicum, C. goeldiana y A.comosus var. erectifolius; GLCc; 5) S. parahyba var. amazonicum: G; y 6) S.parahyba var. amazonicum y A. comosus var. Erectifolius: Gc. La distancia entre las especies forestales fue 4 x 3 m y para las plantas de A. comosus 0.80 m x 0.50 m. El tamaño de la parcela fue 18 x 24 m con cuatro repeticiones por tratamiento, el total de parcelas fue 24 y de área experimental 10 368 m2. Las variables analizadas para inferir el crecimiento del componente forestal fueron altura (H) y diámetro a la altura del pecho (DAP), cada 6 meses durante 3 años. En los seis sistemas de cultivo la tasa semestral de crecimiento de la altura y DAP de S. parahyba var. amazonicum fue mayor en los dos primeros años, y siguió con una tendencia de crecimiento lento y continuo durante los 36 meses de estudio. El efecto positivo de la presencia de A. comosus var. erectifolius se observó en el crecimiento de las plantas de S. parahyba var.amazonicum.

Estudo da homogeneidade e discriminação de madeiras através de espectroscopia de imagens, imagens digitais e ferramentas quimiométricas

Tese (doutorado)–Universidade de Brasília, Instituto de Química, Programa de Pós-Graduação em Química, 2016.

Restauração de florestas exploradas seletivamente no Acre.

Por meio de técnicas de restauração, florestas exauridas podem ser conduzidas de maneira a minimizar os efeitos da exploração seletiva que as modificaram. O plantio de mudas é um método rápido e eficaz de restauração de florestas. Este trabalho objetiva descrever os resultados de plantios de enriquecimento de florestas de produção nos municípios de Xapuri, Brasiléia e Rio Branco, no estado do Acre. Foram utilizadas dez espécies florestais madeireiras comerciais: amarelão (Aspidosperma vargasii A. DC.), angelim (Ormosia arborea (Vell.) Harms), cedro (Cedrela odorata L.), cerejeira (Amburana acreana (Ducke) A. C. Sm.), freijó (Cordia alliodora (Ruiz & Pav.) Oken), ipê (Tabebuia serratifolia (Vahl) G. Nicholson), itaúba (Mezilaurus itauba (Meisn.) Taub. ex Mez), jatobá (Hymenaea courbaril L.), mogno (Swietenia macrophylla King) e timbaúba (Enterolobium maximum Ducke). Os plantios foram entre outubro/2011 a março/2012, totalizando 1273 mudas. Os tratamentos silviculturais de condução e o monitoramento foram nos anos de 2012, 2013, 2014 e 2015. Após 48 meses ao plantio, a taxa média de sobrevivência foi de 42,3%, altura total média de 1,52 m e diâmetro médio de 1,88 cm. As espécies com os melhores desempenhos com relação a crescimento e sobrevivência foram cerejeira, cedro, freijó, jatobá, mogno e timbaúba.