Shallow-water benthic habitats of St. John, U.S. Virgin Islands

Coral reef ecosystems of the Virgin Islands Coral Reef National Monument, Virgin Islands National Park and the surrounding waters of St. John, U.S. Virgin Islands are a precious natural resource worthy of special protection and conservation. The mosaic of habitats including coral reefs, seagrasses and mangroves, are home to a diversity of marine organisms. These benthic habitats and their associated inhabitants provide many important ecosystem services to the community of St. John, such as fishing, tourism and shoreline protection. However, coral reef ecosystems throughout the U.S. Caribbean are under increasing pressure from environmental and anthropogenic stressors that threaten to destroy the natural heritage of these marine habitats. Mapping of benthic habitats is an integral component of any effective ecosystem-based management approach. Through the implementation of a multi-year interagency agreement, NOAA’s Center for Coastal Monitoring and Assessment - Biogeography Branch and the U.S. National Park Service (NPS) have completed benthic habitat mapping, field validation and accuracy assessment of maps for the nearshore marine environment of St. John. This work is an expansion of ongoing mapping and monitoring efforts conducted by NOAA and NPS in the U.S. Caribbean and replaces previous NOAA maps generated by Kendall et al. (2001) for the waters around St. John. The use of standardized protocols enables the condition of the coral reef ecosystems around St. John to be evaluated in context to the rest of the Virgin Island Territories and other U.S. coral ecosystems. The products from this effort provide an accurate assessment of the abundance and distribution of marine habitats surrounding St. John to support more effective management and conservation of ocean resources within the National Park system. This report documents the entire process of benthic habitat mapping in St. John. Chapter 1 provides a description of the benthic habitat classification scheme used to categorize the different habitats existing in the nearshore environment. Chapter 2 describes the steps required to create a benthic habitat map from visual interpretation of remotely sensed imagery. Chapter 3 details the process of accuracy assessment and reports on the thematic accuracy of the final maps. Finally, Chapter 4 is a summary of the basic map content and compares the new maps to a previous NOAA effort. Benthic habitat maps of the nearshore marine environment of St. John, U.S. Virgin Islands were created by visual interpretation of remotely sensed imagery. Overhead imagery, including color orthophotography and IKONOS satellite imagery, proved to be an excellent source from which to visually interpret the location, extent and attributes of marine habitats. NOAA scientists were able to accurately and reliably delineate the boundaries of features on digital imagery using a Geographic Information System (GIS) and fi eld investigations. The St. John habitat classification scheme defined benthic communities on the basis of four primary coral reef ecosystem attributes: 1) broad geographic zone, 2) geomorphological structure type, 3) dominant biological cover, and 4) degree of live coral cover. Every feature in the benthic habitat map was assigned a designation at each level of the scheme. The ability to apply any component of this scheme was dependent on being able to identify and delineate a given feature in remotely sensed imagery.

Manual for the Sampling Design Tool for ArcGIS

The Biogeography Branch’s Sampling Design Tool for ArcGIS provides a means to effectively develop sampling strategies in a geographic information system (GIS) environment. The tool was produced as part of an iterative process of sampling design development, whereby existing data informs new design decisions. The objective of this process, and hence a product of this tool, is an optimal sampling design which can be used to achieve accurate, high-precision estimates of population metrics at a minimum of cost. Although NOAA’s Biogeography Branch focuses on marine habitats and some examples reflects this, the tool can be used to sample any type of population defined in space, be it coral reefs or corn fields.

Boundary options for a research area within Gray's Reef National Marine Sanctuary

Gray’s Reef National Marine Sanctuary (GRNMS) is exploring the concept of a research area (RA) within its boundaries. The idea of a research area was first suggested in public scoping meetings held prior to the review of the Gray’s Reef Management Plan. An RA is a region specifically designed for conducting controlled scientific studies in the absence of confounding factors. As a result, a multidisciplinary group gathered by GRNMS was convened to consider the issue. This Research Area Working Group (RAWG) requested that a suite of analyses be conducted to evaluate the issue quantitatively. To meet this need, a novel selection procedure and geographic information system (GIS) was created to find the optimal location for an RA while balancing the needs of research and existing users. This report and its associated GIS files describe the results of the requested analyses and enable further quantitative investigation of this topic by the RAWG and GRNMS.

Atlas of the shallow-water benthic habitats of American Samoa, Guam, and the Commonwealth of the Northern Mariana Islands

The National Oceanic and Atmospheric Administration (NOAA) National Ocean Service (NOS) initiated a coral reef research program in 1999 to map, assess, inventory, and monitor U.S. coral reef ecosystems (Monaco et al. 2001). These activities were implemented in response to requirements outlined in the Mapping Implementation Plan developed by the Mapping and Information Synthesis Working Group (MISWG) of the Coral Reef Task Force (CRTF) (MISWG 1999). As part of the MISWG of the CRTF, NOS' Biogeography Branch has been charged with the development and implementation of a plan to produce comprehensive digital coral-reef ecosystem maps for all U.S. States, Territories, and Commonwealths within five to seven years. Joint activities between Federal agencies are particularly important to map, research, monitor, manage, and restore coral reef ecosystems. In response to the Executive Order 13089 and the Coral Reef Conservation Act of 2000, NOS is conducting research to digitally map biotic resources and coordinate a long-term monitoring program that can detect and predict change in U.S. coral reefs, and their associated habitats and biological communities. Most U.S. coral reef resources have not been digitally mapped at a scale or resolution sufficient for assessment, monitoring, and/or research to support resource management. Thus, a large portion of NOS' coral reef research activities has focused on mapping of U.S. coral reef ecosystems. The map products will provide the fundamental spatial organizing framework to implement and integrate research programs and provide the capability to effectively communicate information and results to coral reef ecosystem managers. Although the NOS coral program is relatively young, it has had tremendous success in advancing towards the goal to protect, conserve, and enhance the health of U.S. coral reef ecosystems. One objective of the program was to create benthic habitat maps to support coral reef research to enable development of products that support management needs and questions. Therefore this product was developed in collaboration with many U.S. Pacific Territory partners. An initial step in producing benthic habitat maps was the development of a habitat classification scheme. The purpose of this document is to outline the benthic habitat classification scheme and protocols used to map American Samoa, Guam and the Commonwealth of the Northern Mariana Islands. Thirty-two distinct benthic habitat types (i.e., four major and 14 detailed geomorphological structure classes; eight major and 18 detailed biological cover types) within eleven zones were mapped directly into a geographic information system (GIS) using visual interpretation of orthorectified IKONOS satellite imagery. Benthic features were mapped that covered an area of 263 square kilometers. In all, 281 square kilometers of unconsolidated sediment, 122 square kilometers of submerged vegetation, and 82.3 square kilometers of coral reef and colonized hardbottom were mapped.

Spawning cycles and habitats for ballyhoo (Hemiramphus brasiliensis) and balao (H. balao) in south Florida

Two halfbeak species, ballyhoo (Hemiramphus brasiliensis) and balao (H. balao), are harvested as bait in south Florida waters, and recent changes in fishing effort and regulations prompted this investigation of the overlap of halfbeak fishing grounds and spawning grounds. Halfbeaks were sampled aboard commercial fishing vessels, and during fishery-independent trips, to determine spatial and temporal spawning patterns of both species. Cyclic patterns of gonadosomatic indices (GSIs) indicated that both species spawned during spring and summer months. Histological analysis demonstrated that specific stages of oocyte development can be predicted from GSI values; for example, female ballyhoo with GSIs >6.0 had hydrated oocytes that were 2.0−3.5 mm diameter. Diel changes in oocyte diameters and histological criteria demonstrated that final oocyte maturation occurred over a 30- to 36-hour period and that ballyhoo spawned at dusk. Hydration of oocytes began in the morning, and ovulation occurred at sunset of that same day; therefore females with hydrated oocytes were ready to spawn within hours. We compared maps of all locations where fish were collected to maps of locations where spawning females (i.e. females with GSIs >6.0) were collected to determine the degree of overlap of halfbeak fishing and spawning grounds. We also used geographic information system (GIS) data to describe the depth and bottom type of halfbeak spawning grounds. Ballyhoo spawned all along the coral reef tract of the Atlantic Ocean, inshore of the reef tract, and in association with bank habitats within Florida Bay. In the Atlantic Ocean, balao spawned along the reef tract and in deeper, more offshore waters than did ballyhoo; balao were not found inshore of the coral reef tract or in Florida Bay. Both halfbeak species, considered together, spawned throughout the fishing grounds of south Florida.

Integration of submersible transect data and high-resolution multibeam sonar imagery for a habitat-based groundfish assessment of Heceta Bank, Oregon

In the face of dramatic declines in groundfish populations and a lack of sufficient stock assessment information, a need has arisen for new methods of assessing groundfish populations. We describe the integration of seafloor transect data gathered by a manned submersible with high-resolution sonar imagery to produce a habitat-based stock assessment system for groundfish. The data sets used in this study were collected from Heceta Bank, Oregon, and were derived from 42 submersible dives (1988–90) and a multibeam sonar survey (1998). The submersible habitat survey investigated seafloor topography and groundfish abundance along 30-minute transects over six predetermined stations and found a statistical relationship between habitat variability and groundfish distribution and abundance. These transects were analyzed in a geographic information system (GIS) by using dynamic segmentation to display changes in habitat along the transects. We used the submersible data to extrapolate fish abundance within uniform habitat patches over broad areas of the bank by means of a habitat classification based on the sonar imagery. After applying a navigation correction to the submersible-based habitat segments, a good correlation with major boundaries on the backscatter and topographic boundaries on the imagery were apparent. Extrapolation of the extent of uniform habitats was made in the vicinity of the dive stations and a preliminary stock assessment of several species of demersal fish was calculated. Such a habitat-based approach will allow researchers to characterize marine communities over large areas of the seafloor.

地理信息系统及其在动物空间行为研究中的应用

空间属性是动物行为的重要特征,也是行为生态学研究中必须要面对的难题之一.地理信息系统(Geographic Information System,GIS)具有强大的空间分析功能,它在动物行为生态学研究中得到了越来越广泛的应用,如生境选择、领域分析、迁徙路线、活动节律等.本文较系统地阐述了GIS���原理以及在行为生态学研究中所涉及的基本概念和原理,对近年来利用GIS���行的行为生态学研究做了回顾和总结,并对其未来的发展进行了展望.

Report of the training in database and spatial analysis for Marine Protected Areas staff in Indonesia's BOBLME region, Medan, Indonesia, 30 June-4 July, 2015

Training included: Geographic Information System (GIS)concept and software; Global Positioning System (GPS); Ecological Gap Analysis and Marine Protected Area (MPA) design using Marine Reserve Design using Spatially Explicit Annealing (MARXAN); and cartography.

云南西北部四县林地的分布和受威胁程度评价以及该地区鸡形目鸟类的保护状况分析

横断山区拥有独特的生物区系和丰富的生物多样性，成为研究生物和地学许 多重大理论问题的关键性区域。然而该地区复杂的高山峡谷地形不利于大范围实 地考察工作的开展，而传统的调查方法也较难直接地获取野生动物及其生境的一 些量化数据，如某种或某类生物元素的分布、变化情况以及保护状况等，因此长 期以来对于该地区保护网络的规划和管理效果一直缺乏系统地评价，保护工作的 进一步开展依然面临很多难题。近年来地理信息系统（Geographic Information System, GIS���和遥感技术（Remote Sensing, RS）已经广泛应用于野生动物及其 生境保护的各个方面，为横断山区的保护工作拓展了新的研究思路和方法借鉴。 本研究以位于云南西北部横断山区的四个县（德钦、维西、丽江、香格里拉） 作为核心研究地区，以野生动物的主要栖息地——林地为对象，借助RS 和GIS 手段研究该地区内林地的分布、变化以及受威胁程度；并针对鸡形目鸟类的保护 状况进行了分析，为该地区林地和鸡形目鸟类的保护及评价提供科学的方法指导 和建议。具体如下： （1）林地分布以及针叶林的进一步细分。在地面真实数据的辅助下，通过 对Landsat TM/TM+影像的预处理、分类、分类后处理等过程，将研究地区中的 林地与非林地进行划分；针对暖温性针叶林和寒温性针叶林这两种较难区分的类 别，采用导引聚类（guided clustering）的分类方法，进一步对针叶林进行细分。 精度评估的结果显示，林地与非林地的划分总体精度为94.3%，而针叶林细分为 暖温性针叶林和寒温性针叶林的总体精度为74.8%。该方法可以较为准确地划分 该地区不同的生境类型，为野生动物及其生境的保护奠定基础。（2）林地的受威胁程度评价。通过分析研究地区中的林地在40 多年时间跨 度里（1958-2001 年）的变化情况和保护现状，从而评价其受威胁程度，结果反 映出每个县的林地面积都有不同程度的减少，丽江和香格里拉这两个县的林地受 威胁程度相对较高。进一步对丽江和香格里拉两县在不同海拔带的林地分布和变 化情况进行分析，结果表明，丽江的林地主要分布于2000-3500 米的海拔范围内 （占该县全部林地面积的89.7%），而在香格里拉则主要分布于2500 米以上（占 该县全部林地面积的95.2%）；在这两个林地分布较为集中的区域内，都是低海 拔地区林地面积减少程度较高，意味着在开展保护工作时应重点关注这两个县的 低海拔林地。本研究方法可供整个横断山区乃至其他高山峡谷地区借鉴，为保护 网络的完善提供快速的量化参考。 （3）鸡形目鸟类的保护状况分析。借助RS 和GIS 手段描绘研究地区中当 前林地（2001 年左右）以及早期林地（1958 年前后）的分布，针对那些主要以 林地为生境的鸡形目鸟类，在相应限制因子（例如海拔数据）的辅助下对它们当 前和过去的潜在生境进行预测，从而分析它们的保护现状和生境的变化情况。结 果表明研究地区中现有的保护区对这些鸟类的保护尚不完善，并且在过去40 多 年的时间跨度里它们的潜在生境都有不同程度的退化。建议将来的保护工作优先 考虑那些在当前未被充分保护的物种以及潜在生境退化程度相对较高的物种。针 对这些物种，提出在将来的进一步保护工作中的一些建议，为整个横断山区鸡形 目鸟类乃至其他野生动物类群的保护提供参考。

黄土丘陵区小流域表层土壤的有机碳密度及其空间分布

通过野外调查和室内分析,采用多元线性逐步回归和地理信息系统(GIS)相结合的方法,研究了黄土丘陵区燕沟流域表层(0~20 cm)土壤的有机碳密度、空间分布及其与土地利用类型和地形因子等的关系。结果表明,流域表层土壤有机碳密度平均为1.72 kg/m2,变幅为0.97~2.93 kg/m2;土地利用类型是影响土壤有机碳密度变化的首要因子;流域土壤有机碳密度呈镶嵌的树枝状和条带状空间分布格局,其高值斑块区与乔木林地和灌木林地的分布一致,中值斑块区与草地和川坝地的分布一致,低值斑块区与梯田、果园、坡耕地、疏林地和未成林地的分布一致。流域表层土壤有机碳总储量为76.81×103t。

龙滩水电站左岸边坡监测信息系统研制及其监测资料分析

Guangxi Longtan Hydropower Station is not only a representative project of West Developing and Power Transmission from West to East in China, but also the second Hydropower Station to Three Gorges Project which is under construction in China. There are 770 X 104m3 creeping rock mass on the left bank slope in upper reaches, in which laid 9 water inlet tunnels and some underground plant buildings. Since the 435m high excavated slope threatens the security of the Dam, its deformation and stability is of great importance to the power station.Based on the Autodesk Map2004, Longtan Hydropower Station Monitoring Information System on Left Bank has been basically finished on the whole. Integrating the hydropower station monitoring information into Geographic Information System(GIS) environment, managers and engineers can dynamically gain the deformation information of the slop by query the symbols. By this means, designers can improve the correctness of analysis, and make a strategic and proper decision. Since the system is beneficial to effectively manage the monitoring-data, equitably save the cost of design and safe construction, and decrease the workload of the engineers, it is a successful application to the combination of hydropower station monitoring information management and computer information system technology.At the same time, on the basis of the geological analysis and rock mass toppling deformation and failure mechanism analysis of Longtan engineering left bank slope, the synthetic space-time analysis and influence factors analysis on the surface monitoring data and deep rock mass monitoring data of A-zone on left bank slope are carried on. It shows that the main intrinsic factor that effects the deformation of Zone A is the argillite limestone interbedding toppling structure, and its main external factors are rain and slope excavation. What's more, Degree of Reinforcement Demand(DRD) has been used to evaluate the slop reinforce effect of Zone A on left bank according to the Engineering Geomechanics-mate-Synthetics(EGMS). The result shows that the slop has been effective reinforced, and it is more stable after reinforce.At last, on the basis of contrasting with several forecast models, a synthetic forecast GRAV model has been presented and used to forecast the deformation of zone A on left bank in generating electricity period. The result indicates that GRAV model has good forecast precision, strong stability, and practical valuable reliability.

The Geography of Conflict and Death in Belfast, Northern Ireland

The conflict known as the oTroubleso in Northern Ireland began during the late 1960s and is defined by political and ethno-sectarian violence between state, pro-state, and anti-state forces. Reasons for the conflict are contested and complicated by social, religious, political, and cultural disputes, with much of the debate concerning the victims of violence hardened by competing propaganda-conditioning perspectives. This article introduces a database holding information on the location of individual fatalities connected with the contemporary Irish conflict. For each victim, it includes a demographic profile, home address, manner of death, and the organization responsible. Employing geographic information system (GIS) techniques, the database is used to measure, map, and analyze the spatial distribution of conflict-related deaths between 1966 and 2007 across Belfast, the capital city of Northern Ireland, with respect to levels of segregation, social and economic deprivation, and interfacing. The GIS analysis includes a kernel density estimator designed to generate smooth intensity surfaces of the conflict-related deaths by both incident and home locations. Neighborhoods with high-intensity surfaces of deaths were those with the highest levels of segregation ( 90 percent Catholic or Protestant) and deprivation, and they were located near physical barriers, the so-called peacelines, between predominantly Catholic and predominantly Protestant communities. Finally, despite the onset of peace and the formation of a power-sharing and devolved administration (the Northern Ireland Assembly), disagreements remain over the responsibility and ocommemorationo of victims, sentiments that still uphold division and atavistic attitudes between spatially divided Catholic and Protestant populations.

Late Quaternary glaciations in Far NE Russia; combining moraines, topography and chronology to assess regional and global glaciation synchrony

During various periods of Late Quaternary glaciation, small ice-sheets, -caps, -fields and valley glaciers, occupied the mountains and uplands of Far NE Russia (including the Verkhoyansk, Suntar-Khayata, and Chersky Mountains; the KolymaeAnyuy and Koryak Highlands; and much of the Kamchatka and Chukchi
Peninsulas). Here, the margins of former glaciers across this region are constrained through the comprehensive mapping of moraines from remote sensing data (Landsat 7 ETM+ satellite images; ASTER Global Digital Elevation Model (GDEM2); and Viewfinder Panorama DEM data). A total of 8414 moraines
are mapped, and this record is integrated with a series of published age-estimates (n = 25), considered to chronologically-constrain former ice-margin positions. Geomorphological and chronological data are compiled in a Geographic Information System (GIS) to produce ‘best estimate’ reconstructions of ice extent during the global Last Glacial Maximum (gLGM) and, to a lesser degree, during earlier phases of glaciation. The data reveal that much of Far NE Russia (~1,092,427 km2) preserves a glaciated landscape (i.e. is bounded by moraines), but there is no evidence of former ice masses having extended more than 270 km beyond mountain centres (suggesting that, during the Late Quaternary, the region has not been occupied by extensive ice sheets). During the gLGM, specifically, glaciers occupied ~253,000 km2, and rarely extended more than 50 km in length. During earlier (pre-gLGM) periods, glaciers were more extensive, though the timing of former glaciation, and the maximum Quaternary extent, appears to have been asynchronous across the region, and out-of-phase with ice-extent maxima elsewhere in the Northern Hemisphere. This glacial history is partly explained through consideration of climatic-forcing
(particularly moisture-availability, solar insolation and albedo), though topographic-controls upon the former extent and dynamics of glaciers are also considered, as are topographic-controls upon moraine deposition and preservation. Ultimately, our ability to understand the glacial and climatic history of this region is restricted when the geomorphological-record alone is considered, particularly as directly-dated glacial deposits are few, and topographic and climatic controls upon the moraine record are difficult to
distinguish.

Hidrogeomorfologia e sustentabilidade de recursos hídricos subterrâneos

A água subterrânea de rochas duras é uma fonte importante para fins domésticos, industriais e agrícolas e mesmo para o consumo humano. A geologia, a tectónica, a geomorfologia e as características hidrológicas controlam o fluxo, ocorrência e armazenamento das águas subterrâneas. A disponibilidade da água subterrânea no meio geológico está totalmente dependente das áreas de recarga e de descarga numa determinada bacia. A precipitação é a principal fonte de recarga em aquíferos descontínuos, enquanto que a descarga depende dos declives do terreno e dos gradientes do nível hidrostático e ainda das condições hidrogeológicas do solo. A hidrogeomorfologia é um domínio interdisciplinar emergente, que estuda as relações entre as unidades geomorfológicas e o regime das águas superficiais e subterrâneas de uma determinada área. A compreensão do papel da geomorfologia é essencial para avaliar de forma rigorosa os sistemas hidrogeológicos e os recursos hídricos. Os dados de detecção remota providenciam uma informação espacial valiosa e actualizada da superfície terrestre e dos recursos naturais. Os recentes avanços tecnológicos colocaram as técnicas de detecção remota e os sistemas de informação geográfica (SIG) numa posição cimeira como ferramentas de gestão metodológica. Foi criada, em ambiente SIG, uma base de geo-dados, essencialmente derivada da detecção remota, da cartografia e do trabalho de campo. Esta base de dados, organizada em diferentes níveis de informação, inclui uma avaliação principalmente focalizada no uso do solo, climatologia, declives, geologia, geomorfologia e hidrogeologia. No presente estudo foram cruzados diversos níveis de informação, com a geração de múltiplos mapas temáticos para atingir um quadro integrado dos diversos sectores no Norte e Centro de Portugal. Os sectores em estudo (Caldas da Cavaca, Termas de Entre-os-Rios, Águas de Arouca e Águas do Alardo) estão localizados em sistemas hidrogeológicos predominantemente constituídos por rochas graníticas, por vezes intersectadas por filões de quartzo, aplito-pegmatíticos e doleríticos. Para apoiar a elaboração dos mapas hidrogeomorfológicos foi criada uma base SIG, contendo diversa informação, nomeadamente topografia, hidrografia, litologia, tectónica, morfoestrutura, hidrogeologia, geofísica e uso do solo. Além disso, foram realizadas várias campanhas de campo, as quais permitiram: o estabelecimento dum mapeamento geológico, geomorfológico e hidrogeológico; a caracterização in situ do grau de alteração, resistência e grau de fracturação dos maciços rochosos; o desenvolvimento de um inventário hidrogeológico em conjunto com alguns ensaios expeditos in situ. A interligação entre os parâmetros geomorfológicos, hidrológicos e hidrogeológicos dos sistemas de água subterrânea “normal” e hidromineral destaca a importância de uma cartografia e duma modelação conceptual hidrogeomorfológica. Além disso, contribuirá para um melhor apoio à decisão na gestão sustentável dos recursos hídricos.

Análise da distribuição do esforço de pesca e das capturas da palmeta (Reinhardtius hippoglossoides, Walbaum 1792) capturada pela frota comercial portuguesa na área de regulamentação NAFO

Dissertação de Mestrado, Aquacultura e Pescas, Especialização em Pescas, Faculdade de Ciências do Mar e do Ambiente, Universidade do Algarve, 2008