Global distributions of diazotrophs abundance, biomass and nitrogen fixation rates - Gridded data product (NetCDF) - Contribution to the MAREDAT World Ocean Atlas of Plankton Functional Types

The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedented global data set for ecological and biochemical analysis and modeling as well as a clear mandate for compiling additional existing data and for focusing future data gathering efforts on key groups in key areas of the ocean. This is a gridded data product about diazotrophic organisms . There are 6 variables. Each variable is gridded on a dimension of 360 (longitude) * 180 (latitude) * 33 (depth) * 12 (month). The first group of 3 variables are: (1) number of biomass observations, (2) biomass, and (3) special nifH-gene-based biomass. The second group of 3 variables is same as the first group except that it only grids non-zero data. We have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling more than 11,000 direct field measurements including 3 sub-databases: (1) nitrogen fixation rates, (2) cyanobacterial diazotroph abundances from cell counts and (3) cyanobacterial diazotroph abundances from qPCR assays targeting nifH genes. Biomass conversion factors are estimated based on cell sizes to convert abundance data to diazotrophic biomass. Data are assigned to 3 groups including Trichodesmium, unicellular diazotrophic cyanobacteria (group A, B and C when applicable) and heterocystous cyanobacteria (Richelia and Calothrix). Total nitrogen fixation rates and diazotrophic biomass are calculated by summing the values from all the groups. Some of nitrogen fixation rates are whole seawater measurements and are used as total nitrogen fixation rates. Both volumetric and depth-integrated values were reported. Depth-integrated values are also calculated for those vertical profiles with values at 3 or more depths.

Leaf chlorophyll concentration relates to transpiration efficiency in peanut

Two pot experiments were conducted in two different seasons at the University of Agricultural Science, Bangalore, India, to study (a) the relationship between chlorophyll concentration (by measuring the leaf light-transmittance characteristics using a SPAD metre) and transpiration efficiency (TE) and (b) the effect of leaf N on chlorophyll and TE relationship in peanut. In Experiment (Expt) I, six peanut genotypes with wide genetic variation for the specific leaf area (SLA) were used. In Expt II, three non-nodulating isogenic lines were used to study the effect of N levels on leaf chlorophyll concentration–TE relationship without potential confounding effects in biological nitrogen fixation. Leaf N was manipulated by applying N fertiliser in Expt II. Chlorophyll concentration, TE (g dry matter kg−1 of H2O transpired, measured using gravimetric method), specific leaf nitrogen (g N m−2, SLN), SLA (cm2 g−1), carbon isotope composition (Δ13C) were determined in the leaves sampled during the treatment period (35–55 days after sowing) in the two experiments. Results showed that the leaf chlorophyll concentration expressed as soil plant analytical development (SPAD) chlorophyll metre reading (SCMR) varied significantly among genotypes in Expt I and as a result of N application in Expt II. Changes in leaf N levels were strongly associated with changes in SCMR, TE and Δ13C. In both the experiments, a significant positive relationship between SCMR and TE with similar slopes but differing intercepts was noticed. However, correction of TE for seasonal differences in vapour pressure deficit (VPD) between the two experiments resulted in a single and stronger relationship between SCMR and TE. There was a significant inverse relationship between SCMR and Δ13C, suggesting a close linkage between chlorophyll concentration and Δ13C in peanut. This study provides the first evidence for a significant positive relationship between TE and leaf chlorophyll concentration in peanut. The study also describes the effect of growing environment on the relationships among SLA, SLN and SCMR.

豆科植物及其在内蒙古锡林河流域放牧草原生态系统中作用的研究

内蒙古锡林河流域是我国典型温带草原分布地区，也是我国重点牧区之一。近年来，由于人口增加、过度放牧以及管理不善等原因导致草原退化加剧，草原生态系统养分输入输出失衡，草地生产力下降。 豆科植物不仅是高蛋白优质牧草，而且具有生物固氮能力，对维持草地生态系统中土壤-植物-动物之间的氮平衡有重要作用。本论文主要调查研究了内蒙古锡林河流域放牧草原生态系统中豆科植物的分布、固氮能力、微生物状况，并探讨了目前草原大量出现的豆科植物小叶锦鸡儿灌丛在养分供给上对草原生态系统的影响。 豆科植物的分布调查采用样线法在4 种草原植被类型7 个植物群落进行，包括典型草原（羊草群落、大针茅群落及小叶锦鸡儿群落和冷蒿群落2 个退化草原群落）、草甸草原（贝加尔针茅群落）、河漫滩草甸（灰脉苔草群落）及沙地（榆树疏林群落），除榆树疏林群落仅放牧处理外，其他群落均包括放牧和不放牧对照处理。结果显示，豆科植物共有12 属，16 种。放牧总体上降低了豆科植物种群在群落中的数量特征（平均高度、密度、频度）和种类组成，但在退化草原群落中有不同的变化趋势。小叶锦鸡儿在典型草原中分布广、密度大、出现频率高；尤其在小叶锦鸡儿群落放牧样地，出现频度为95%，密度近4 株•m-2。花苜蓿在4 种草原植被类型中均有分布。 典型草原4 个群落在放牧和不放牧条件下土壤微生物碳氮含量和微生物呼吸速率的测定结果显示，放牧影响了豆科植物根际土壤的微生物量和微生物呼吸速率，但各群落变化规律不一致。放牧后小叶锦鸡儿分布最为广泛的小叶锦鸡儿群落在放牧条件下微生物碳含量和微生物呼吸速率都显著增加。小叶锦鸡儿灌丛与其他草本豆科植物相比，根际土壤的微生物量和微生物呼吸速率较高。土壤水分对微生物呼吸速率以及微生物碳氮含量有重要作用，存在极显著的正相关关系。 采用15N 自然丰度法评估野外条件下小叶锦鸡儿和花苜蓿的固氮百分率，计算结果高于100%，这主要是由野外植物叶片δ15N 值低于室内无氮培养的B 值引起的。15N 自然丰度法是否适用于评估草原植物的固氮能力还有待深入研究，但从野外δ15N 测定中也得到了一些有趣的结果。优势豆科和非豆科植物之间的δ15N 差异很大。小半灌木木地肤δ15N 值最高，并在放牧后显著下降，杂类草、禾本科大针茅与之变化趋势相同；具有潜在固氮能力的豆科植物和禾本科羊草在放牧后无显著差异或显著增加；豆科植物小叶锦鸡儿、乳白花黄芪和花苜蓿的叶片δ15N 值均为偏低负值，显著低于非豆科植物。研究结果说明不同植物的氮利用方式不同，豆科植物和羊草的生物固氮可能同时为受氮限制的内蒙古草原提供氮源。 小叶锦鸡儿灌丛影响了周围土壤的有效氮含量。灌丛内部土壤硝态氮和氨态氮有高于外部土壤的趋势。土壤含水量与硝态氮浓度显著正相关。土壤有效氮含量变异系数平均高于50%，土壤资源表现出很强的空间异质性。灌丛内部植物体内全氮含量高于灌丛外，而灌丛斑块发育时间对植物化学元素没有显著影响。

Program, abstracts and related documents.

The context: Soil biodiversity and sustainable agriculture; Abstracts - Theme 1: Monitoring and assessment: Bioindicators of soil health: assessment and monitoring for sustainable agriculture; Practical tools to measure soil health and their use by farmers; Biological soil quality from biomass to biodiversity - importance and resilience to management stress and disturbance; Integrated management of plant-parasitic nematodes in maize-bean cropping systems; Microbial quantitative and qualitative changes in soils under different crops and tillage management systems in Brazil; Diversity in the rhizobia associated with Phaseolus vulgaris L: in Ecuador and comparisons with Mexican bean rhizobia; Sistemas integrados ganadería-agricultura en Cuba; Soil macrofauna as bioindicator of soil quality; Biological functioning of cerrado soils; Hydrolysis of fluorescein diacetate as a soil quality indicator in different pasture systems; Soil management and soil macrofauna communities at Embrapa Soybean, Londrina, Brazil; Soil macrofauna in a 24 - year old no-tillage system in Paraná, Brazil; Invertebrate macrofauna of soils inpastures under different forms of management in the cerrado (Brazil); Soil tillage modifies the invertebrate soil macrofauna community; Soil macrofauna in various tillage and land use systems on an oxisols near Londrina, Paraná, Brazil; Interference of agricultural systems on soil macrofauna; Scarab beetle-grub holes in various tillage and crop management systems at Embrapa Soybean, Londrina, Brazil; Biological management of agroecosystems; Soil biota and nutrient dynamics through litterfall in agroforestry system in Rondônia, Amazônia, Brazil; Soil-C stocks and earthworm diversity of native and introduced pastures in Veracruz, Mexico; Theme 2 : Adaptive management: Some thoughts on the effects and implications of the transition from weedy multi-crop to wead-free mono-crop systems in Africa; Towards sustainable agriculture with no-tillage and crop rotation systems in South Brazil; Effect of termites on crusted soil rehabilitation in the Sahel; Management of macrofauna in traditional and conventional agroforestry systems from India with special reference to termites and earthworms; Adaptive management for redeveloping traditional agroecosystems; Conservation and sustainable use of soil biodiversity: learning with master nature!; Convergence of sciences: inclusive technology innovation processes for better integrated crop/vegetation, soil and biodiversity management; Potential for increasing soil biodiversity in agroecosystems; Biological nitrogen fixation and sustainability in the tropics; Theme 3: Research and innovation: Plant flavonoids and cluster roots as modifiers of soil biodiversity; The significance of biological diversity in agricultural soil for disease suppressiveness and nutrient retention; Linking above - and belowground biodiversity: a comparison of agricultural systems; Insect-pests in biologically managed oil and crops: the experience at ICRISAT; Sistemas agricolas micorrizados en Cuba; The effect of velvetbean (Mucuna pruriens) on the tropical earthworm Balanteodrilus pearsei: a management option for maize crops in the Mexican humid tropics; The potential of earthworms and organic matter quality in the rehabilitation of tropical soils; Research and innovation in biological management of soil ecosystems; Application of biodynamic methods in the Egyptian cotton sector; Theme 4: Capacity building and mainstreaming: Soil ecology and biodiversity: a quick scan of its importance for government policy in The Netherlands; Agrotechnological transfer of legume inoculants in Eastern and Southern Africa; Agricultura urbana en Cuba; Soil carbon sequestration for sustaining agricultural production and improving the environment; Conservation and sustainable management of below-ground biodiversity: the TSBF-BGBD network project; The tropical soil biology and fertility institute of CIAT (TSBF); South-South initiative for training and capacity building for the management of soil biology/biodiversity; Strategies to facilititate development and adoption of integrated resource management for sustainable production and productivity improvement; The challenge program on biological nitrogen fixation (CPBNF); Living soil training for farmers: improving knowledge and skills in soil nutrition management; Do we need an inter-governmental panel on land and soil (IPLS)? Protection and sustainable use of biodiversity of soils; Cases Studies -- Plant parasitic nematodes associated with common bean (Phaseolus vulgaris L.) and integrated management approaches; Agrotechnological transfer of legume inoculants in Eastern and Southern Africa; Restoring soil fertility and enhancing productivity in Indian tea plantations with earthworms and organic fertilizers; Managing termites and organic resources to improve soil productivity in the Sahel; Overview and case studies on biological nitrogen fixation: perspectives and limitations; Soil biodiversity and sustainable agriculture: an overview.

Influence of organic fertilization on the number of culturable diazotrophic endophytic bacteria isolated from sugarcane

The numbers of culturable diazotrophic endophytic bacteria (CDEB) from roots stems and leaves of sugarcane submitted to organic inorganic or no fertilization were compared In order to determine the size of the N(2) fixing populations the Most Probable Number technique (MPN) was used The quantification of diazotrophic bacteria by using the acetylene reduction assay (ARA) was more accurate than observing the bacterial growth in the vials to confirm N(2) fixing capability the detection of gene nifH was performed on a sample of 105 Isolated bacteria The production of extracellular enzymes involved in the penetration of the plants by the bacteria was also studied The results showed that organic fertilization enhances the number of CDEB when compared with conventional fertilization used throughout the growing season The maximum number of bacteria was detected in the roots Roots and stems presented the greatest number of CDEB in the middle of the cropping season and in leaves numbers varied according to the treatment Using two pairs of primers and two different methods the nifH gene was found in 104 of the 105 tested isolates Larger amounts of pectinase were released by isolates from sugarcane treated with conventional fertilizers (66%) whereas larger amounts of cellulase were released by strains isolated from sugarcane treated with organic fertilizers (80%) (C) 2010 Elsevier Masson SAS All rights reserved

Estirpes de Rhizobium tropici na inoculação do feijoeiro

Avaliando o comportamento do feijoeiro inoculado com cinco estirpes de Rhizobium tropici e a adubação mineral com nitrogênio, sobre alguns fatores relacionados à sua produtividade, utilizou-se um delineamento experimental de blocos ao acaso, com oito tratamentos constituídos pela inoculação do feijoeiro cultivar IAC Carioca com cinco estirpes de Rhizobium tropici (CIAT 899 - estirpe referência; F35; F54; F81 e CM255), dois controles sem inoculação sendo um adubado com N na semeadura e em cobertura e outro sem adubação e um cultivar não nodulante (NORH 54) adubado; com seis repetições. Avaliaram-se: número de nódulos por planta; massa de material seco da parte aérea; teor de N nas folhas; número de vagens por planta; número de grãos por planta; número de grãos por vagem; peso de 100 grãos e produtividade de grãos. A inoculação de estirpes eficientes de Rhizobium em cultivar nodulante de feijoeiro, ou o cultivo deste em solos com população nativa eficiente, pode possibilitar a não utilização de nitrogênio em cobertura na cultura do feijoeiro, sem afetar a produtividade.

Nodulação e atividade da nitrato redutase em função da aplicação de molibdênio em soja

Among the nutrients that are essential for the biological nitrogen fixation by soybean plants, molybdenum stands out for being a cofactor of the nitrate reductase, affecting enzymatic activity and, consequently, the nodulation process. The research had as objective to evaluate the effects of molybdenum application on soybean nodulation and nitrate reductase activity. The experiment was conduced in greenhouse, sowing soybean in 12 L pots, with two plants per plot. The treatments consisted of two application via (with the seeds and leaf dressing) and two molybdenum doses (12 and 24 g ha(-1) with the seeds; 30 and 60 g ha(-1) leaf dressing) in ammonium molybdate form, plus the control. The number and dry mass of nodules and nitrogen content in soybean leaves were evaluated. Samples of leaves for the evaluation of nitrate reductase activity were taken at 10 a.m. and 10 p.m. It was concluded that soybean nodulation is affected by Mo dose and application via, resulting in higher number and weight of nodules when it is applied with the seeds. The enzymatic activity of the nitrate reductase is influenced by Mo fertilization and it is higher for leaf dressing with the double of the recommended dose.

Doses de inoculante e nitrogênio na semeadura da soja em área de primeiro cultivo

The inoculation of soybean crop with Bradyrhizobium bacteria is a widespread practice, due to excellent results achieved in productivity, however, some doubt still arise in relation the need of application of mineral nitrogen at sowing. In that mean, this work aimed to evaluate the response of the doses at inoculant and mineral nitrogen in the sowing of crop soybean in area of first cultivation. The experiments were carried in the experimental field of the University of the Estate of Mato Grosso, Campus of Alta Floresta - MT, Brazil, in the growing seasons of 2006/2007 and 2007/2008. The experimental design was randomized blocks, in a factorial escheme 2 x 4, with four replications. The factors consisted in the inoculation of seeds with Bradyrhizobium japonicum *(3 e 6 mL kg(-1) of seeds), and nitrogen fertilizer at sowing *(0, 10, 20 e 40 kg ha(-1)). The following variables were evaluated: plant height, insertion height of first pod, number of pod per plant, number of grain per pod, mass of 100 grain and grain productivity. In the two growing seasons there was no significant difference for doses of inoculants applied in first year of cultivation with soybean. To nitrogen application at sowing of soybean crop there was quadratic effect to plant height and of insertion height of first pod and growing linear to number of pod per plant in the second year of cultivation, however, without significant increase the productivity.

Caracterização estrutural de polissacarídeos produzidos por bactérias dos gêneros Rhizobium e Mesorhizobium

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Avaliação do potencial biotecnológico de linhagens mutantes de Rhizobium tropici

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Potencial biotecnológico de linhagens mutantes de Bradyrhizobium elkanii caracterizado por PCR quantitativo em tempo real

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Enumeração celular pela quantificação absoluta por PCR em tempo real de culturas de bradirrizóbios

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Metabolismo respiratório de bradirrizóbios em processos “in vitro” e simbióticos analisado por PCR quantitativo em tempo real

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Inoculações de bactérias promotoras de crescimento no cultivo de arroz em solução nutrtiva

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)