Whole genome analysis: Experimental access to all genome sequenced segments through larger-scale efficient oligonucleotide synthesis and PCR

The recent ability to sequence whole genomes allows ready access to all genetic material. The approaches outlined here allow automated analysis of sequence for the synthesis of optimal primers in an automated multiplex oligonucleotide synthesizer (AMOS). The efficiency is such that all ORFs for an organism can be amplified by PCR. The resulting amplicons can be used directly in the construction of DNA arrays or can be cloned for a large variety of functional analyses. These tools allow a replacement of single-gene analysis with a highly efficient whole-genome analysis.

(Table 1) Stable-isotopes of mineral separates and whole-rock powders from altered volcanic rocks of DSDP Hole 62-465A

Hess Rise, in the western Pacific Ocean, formed in the mid-Cretaceous south of the equator and moved north with the Pacific Plate (Lancelot and Larson, 1975; Lancelot, 1978; Valuer et al., 1979). Southern Hess Rise was a volcanic archipelago, at least until late Albian time, after which it subsided to become one of the major aseismic rises in the present western Pacific. A second pulse of volcanic activity apparently occurred in the Campanian-Maastrichtian interval, which may be related to tectonic uplift of Hess Rise (Valuer and Jefferson, this volume). Trachytic rocks underlie 412 meters of carbonate sediments at Site 465 on southern Hess Rise. Twenty-four meters of trachyte were recovered from a 64-meter cored interval. The rocks are relatively homogeneous in texture, color, and composition, indicating that the cored sequence was probably part of only one magmatic event (Seifert et al., this volume). Large (> 5-mm) vesicles and oxidized parts of some flows suggest subaerial or shallow-water extrusions. The rocks are high in silica and relatively rich in Na2O, K2O, and light rare-earth elements. The upper part of the volcanic-rock sequence is a breccia, the fragments cemented by calcite, pyrite, and rare barite. Some of the resultant veins are more than 1 cm thick. In addition to the veins, many vesicles are also filled with these minerals. Brecciation and the number and thickness of veins decrease with depth in the hole. The degree of weathering, as indicated by water content, also decreases with depth.