DNA damage in two bivalve species: Mytilus galloprovincialis and Ruditapes decussatus from the South coast of Portugal

Dissertação de mest., Estudos Marinhos e Costeiros, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2009

Seasonal variations in gross biochemical composition, percent edibility, and condition index of the clam Ruditapes Decussatus cultivated in the Ria Formosa (South Portugal)

The grooved carpet shell clam, Ruditapes decussatus (L. 1758), is one of the most popular and profitable molluscs exploited in rearing plots in the Mediterranean. However, annual catch has been declining steadily since the early nineties. In order to understand the seasonality of its nutritional value, thus providing an improved basis for economical valuation of the resource, gross biochemical composition, percentage edibility and condition index were investigated during a year with monthly periodicity in a commercially exploited population of the clam Ruditapes decussatus in the Ria Formosa, a temperate mesotidal coastal lagoon located in the south of Portugal. Our results show that total and non-protein nitrogen co-varied during the year, resulting in a protein content that peaked in the warmest months. Although complementary in summer, carbohydrate and lipid contents showed irregular annual trends. The observed seasonality was comparable to that shown by studies elsewhere at similar latitudes, and are underpinned by the reproductive cycle of the species. Our results show the clams to be at their prime nutritional value at the beginning of summer, when protein content peaks.

Exploring an uncommon host-parasite interaction to unveil the uniqueness of Perkinsus sp as a model organism

We report the exploration of some unique metabolic pathways in Perkinsus olseni a marine protist parasite, responsible to significant mortalities in mollusks, especially in bivalves all around the world. In Algarve, south of Portugal carpet shell clam Ruditapes decussatus mortalities can reach up to 70%, causing social and economic losses. The objective of studying those unique pathways, is finding new therapeutic strategies capable of controlling/eliminating P. olseni proliferation in clams. In that sense metabolic pathways, were explored, and drugs affecting these cycles were tested for activity. The first step involved the identification of the genes behind those pathways, the reconstitution of the main steps, and molecular characterization of those genes and later on, the identification of possible targets within the genes studied. Metabolic cycles were screened due to the fact of not being present in host or differ in a critical way, such as the following pathways: shikimate, MEP-­‐ isoprenoids, Leloir cycle for chitin production, purine biosynthesis (unique among protists), the de novo synthesis of folates (absent in metazoa) and some unique genes like, the alternative oxidase (a branch of respiratory chain) and the hypoxia sensor HPH. All those pathways were covered and possible chemical inhibition using therapeutic drugs was tested with positive results. The relation between the common host Ruditapes decussatus and P. olseni was also explored in a dimension not possible some years ago. With the accessibility to second generation sequencers and microarray analysis platforms, genes involved in host defense or parasite virulence and resistance to the host were deciphered, allowing aiming to new targets (mechanisms and pathways), offering new possibilities for the control of Perkinsus in close environments. The thousands of genes, generated by this work, sequenced and analyzed from this commercial valuable clam and for Perkinsus olseni will be an important and value tool for the scientific community, allowing a better understanding of host-­‐parasite interactions, promoting the usage of P. olseni as an emerging model for alveolata parasites.

Spatial and temporal variation of commercially important bivalve species in the Algarve coast, Portugal

Dissertação de mestrado, Biologia Marinha, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2015

Characterizing the effects of ocean acidification in larval and juvenile Manila clam, Ruditapes philippinarum, using a transcriptomic approach

Ocean acidification as a result of anthropogenic carbon dioxide (CO2) emissions and global climate change poses a risk to the ecological landscape of intertidal and shallow subtidal communities. The organisms that inhabit these waters will have to cope with changing environmental conditions through the appropriate modulation of physiological processes. Calcifying organisms are particularly at risk, as increased atmospheric levels of CO2 in the atmosphere increase the partial pressure of CO2 (pCO2) in the oceans. Increased pCO2 reduces the saturation of carbonate minerals required to form calcified structures. Being able to cope with the increased energetic demand of maintaining these structures, in addition to other vital physiological processes, will be the key driver that determines which organisms will persist. Assessment of larval and juvenile Manila clam mortality and physiology in this study suggests that this species is capable of coping with elevated pCO2 conditions. The use of high throughput sequencing and RNA sequence analysis in larval clams revealed several physiological processes that play important roles in the Manila clam’s ability to tolerate elevated pCO2 conditions during this life stage. Exposure of juvenile Manila clams, acclimated to elevated pCO2 conditions, to a thermal stress revealed that this species might also be capable of coping with multiple stressors associated with global climate change. Manila clams could therefore represent a model for studying physiological mechanisms associated with successful acclimation of populations to ocean acidification.

Alternativas para la extracción de concha navaja (Ensis macha) en Tamborero-Huarmey

El estudio estuvo dirigido a experimentar alternativas de extracción de concha navaja en Tamborero al sur de Huarmey, del 25 al 28 de mayo del 2008. Se utilizó dos embarcaciones marisqueras, con aditamentos para buceo semi autónomo y participación de buzos artesanales y un buzo científico de IMARPE. Se experimentó con instrumentos como bomba con boquilla modificada, pinza y gancho y en forma manual. Las diferentes técnicas presentaron un rendimiento medio de extracción de 24 kg/h para bomba con boquilla, 3 kg/h para pinza, 1 kg/h para gancho y 5 kg/h para manual. Con las técnicas manuales, se obtuvo mejor selección de tallas con ejemplares ≥120 mm, los instrumentos registraron valores menores a 4% de ejemplares de talla comercial.

Ensis macha (Molina, 1782) en los principales bancos naturales de la Región Áncash, 2010

Se efectuó la evaluación de la navaja Ensis macha del 7 al 18 de setiembre 2010 en los principales bancos naturales del litoral de Áncash. La longitud valvar fluctuó entre 38 y 174 mm con estructura polimodal en todas las áreas evaluadas. En la mayor parte de los bancos evaluados la especie superó la talla mínima de extracción a excepción de Patillos (19,6%). En individuos mayores de 75 mm predominaron estadios madurantes y en recuperación. La especie se distribuyó formando parches, sus densidades medias estratificadas variaron entre 1,5 ind./m2 en Mar Brava y 17,4 ind./m2 en Patillos. La población y biomasa estimada fue 6,02 millones de individuos y 174 toneladas respectivamente. El 82,9% de la población correspondió a los bancos naturales de Playa Grande, Canaco y Patillos. En áreas costeras de Casma y Huarmey la temperatura superficial continuó con anomalías negativas, guardando relación con la presencia de procesos de afloramiento que influyeron en el oxígeno disuelto.

Evaluación poblacional de Ensis macha (Molina, 1782) en bahía Independencia-Pisco, 2010

Entre octubre y noviembre 2010 se realizó una evaluación poblacional de la concha navaja (Ensis macha) para determinar distribución, abundancia y estructura poblacional en los bancos naturales de bahía Independencia, empleando el muestreo al azar. Se colectó 672 individuos, la longitud valvar fluctuó entre 9 y 186 mm, promedio 126,2 mm, el 20,2% de ejemplares presentaron tallas menores a la mínima de extracción (≥120 mm). Las concentraciones variaron entre 0,5 y 76,5 ind.m-2, el área con mayor densidad promedio fue Balsero (12,5 ind.m-2), seguido de Canastones (3,6 ind.m-2), Morro Quemado (1,9 ind.m-2) y Tunga (1,5 ind.m-2). La biomasa relativa osciló entre 6,6 y 2.210,2 g.m-2, la mayor biomasa promedio se registró en Balsero con 359,7 g.m-2. La población y biomasa total fueron estimadas en 17,55 millones (±35,3%), y 498,65 t (±37,5%), respectivamente. En Morro Quemado, el recurso no se ha recuperado a pesar de la veda establecida en el litoral de Pisco (R.M. Nº 661-2008-PRODUCE); mientras que en Balsero se observaron signos de recuperación

Réponse de la communauté de mollusques aux perturbations physiques et chimiques dans un grand lac fluvial (Lac Saint-Pierre, Fleuve Saint-Laurent, QC)

Les mollusques sont des indicateurs de perturbations anthropiques et environnementales. Ce groupe de macroinvertébrés représente en outre une source importante de nourriture pour les poissons et les oiseaux aquatiques du littoral. Les hypothèses de cette étude sont que la communauté de mollusques est influencée indirectement par les tributaires agricoles et/ou par des variables environnementales (comme la dessiccation et l'exposition aux vagues) puisque ces perturbations sont susceptibles de modifier leurs sources alimentaires et leur habitat. Les indicateurs de la réponse des mollusques aux agents perturbateurs sont la composition, la diversité, la densité, ainsi que la biomasse des espèces. En septembre 2013, des mesures de paramètres physico-chimiques de l'eau ont été réalisées, et des échantillons de mollusques et de végétation aquatique ont été prélevés à 14 sites le long des rives du lac Saint-Pierre (Fleuve Saint-Laurent, Québec, Canada). Le long de la rive nord, les sites fortement exposés à l'action du vent, situés à de plus grandes élévations, affichaient une plus faible densité, biomasse et richesse spécifique de mollusques que les sites de la rive sud, en milieu plus abrité et profond. Les sites physiquement perturbés étaient caractérisés par de faibles biomasses en macrophytes submergés. Les sphaeriidae apparaissent comme des exceptions à ces patrons, montrant une abondance plus élevée aux sites presque dépourvus de macrophytes. Bien que les variables physiques et l'habitat exercent une influence déterminante sur les communautés de mollusques, les gastéropodes et les moules unionidés étaient également affectés par la dégradation de la qualité de l'eau dans le panache des tributaires agricoles. La richesse, la densité et la biomasse des gastéropodes étaient négativement influencées par des teneurs élevées de matières en suspension et de fer dissous. Les résultats de notre étude montrent que la communauté de mollusques du lac Saint-Pierre est directement affectée par l'émersion périodique, l'exposition au vent, et indirectement par l'effet de ces variables physiques sur les macrophytes qui constituent leur habitat.

Electrophoretic, Biochemical and Morphometric studies on Three Bivalves of Cochin and Nearby Waters

Division of Marine Biology, Microbiology and Biochemistry, School of Marine Sciences, Cochin University of Science and Technology

STUDIES ON THE BIOLOGY OF THE WEDGE CLAM DONAX INCARNATUS (GMELIN) FROM THE MALIPPURAM BEACH OF KERALA

The present investigations have considerably enhanced the existing knowledge on the biology and distribution/availability pattern of D.incarnatus in the Malippuram region. The species occurs in good concentration during October - March/April, and disappears from the area during late premonsoon and monsoon months. Recolonising the area in September, it grows fast in the subsequent months. The life span of the species is estimated to be about an year. Studies on the reproductive biology of the species have revealed that there are two spawning peaks, the major peak in February - March and minor peak, in December. The salinity regime of the area influences the reproductive activity. These observations form the original contribution in the thesis. The information on variation in water content, protein,glycogen and lipid levels in relation to reproductive cycle has helped to a better understanding of the gametogenic activity and spawning of the species. Similarly, the findings on salinity tolerance and filtration rate have shown that small sized clams exhibit greater tolerance range than larger clams, and grow at a faster rate with active metabolism. It is hoped that these information would considerably add to the present knowledge of the basic facts which are relevant to the improvement and management of the clam fishery of this region.

Studies on amylolytic bacteria in Cochin backwaters

This thesis Entitled Studies on amylolytic bacteria in cochin backwaters.This thesis presents a detailed account of the disribution of amylolytic bacteria in water. sediment. fishes ( Etroplus suratensis and Liza parsia) • prawns ( Penaeus indicus and Metapenaeus dobsoni) and clams ( Sunetta scripta and Meretrix casta) from Cochin backwaters. genera-wise distribution of amylolytic bacteria, ability of selected strains to grow and produce amylase at various physico-chemical conditions. Regulation of amylase synthesis anrt characters of amylases producer by these halophilic bacteria.Amylolytic bacteria are distributed widely in water. sediment. fishes. prawns and clams of Cochin back waters. 53% of the total isolates tested were capable of producing amylase. Maximum number of arnylolytic bacteria were present in Metapenaeus dobsoni. In general, the gut region of aquatic animals harboured more amylolytic bacteria than the gill or surface. These bacteria may help in the digestion of starch present in their food.Presence of ions in the medium was found to be essential for growth and amylase production. It was found that this ionic requirement is not highly specific. Sorlium chloride could be replaced by potassium chloride. or magnesium chloride to some extent I without affecting growth and amylase production. The important function of these ions may be to maintain the osmotic balance between the cells and their environment.All the isolates showed the ability to grow and produce amylase using raw-starches from cassava. plantain and potato .This property suggests their role in the rdegradation of native starches in the environment

Studies on the effect of the organophosphorus pesticide Eka(Rlu) x EC 25 on the bacterial flora of Villorita cyprinoides var. cochinensis (Han1ey)

The thesis is Studies on the Effect or the Obganophosphorus Pesticide Ekalux(R) EC 25 on the Bacterial Flora or Villorita Cyprinoides Var.Cochinensis (Hanley). For the present investigation, the black clam Villorita gyprinoides var. cochinensis (Hanley), a most common clam genus present in this estuarine system has been selected as test organaism and Ekalux (R) EC 25 as toxicant. The aspects dealt with are 1. Total heterotrophic bacterial population, 2. Generic composition, 3. Hydrolytic enzyme producing bacteria, 4. Antibiotic resistance, 5. Heavy metal resistance, 6. The effect of pesticide concentration on the growth of the bacteria and 7. Effect of temperature, pH and sodium chloride on the growth and phosphate release of selected isolates.The samples for the experiment were collected from the Vembanad Lake, near Kumbalam Island during the period of September 1985 to May '86. The THB of the estuarine water and clams contained 6.5 x I04/ml and 2.975 x l06/g respectively, immediately after collection. Untreated water and clam samples showed enormous increase in THB from 0 hr population. The treated samples (water and clams) contained higher THB than 0 hr. In general, THB was observed to increase tremendously in the samples treated with pesticide when compared to their native flora. With reference to various concentrations of pesticides, THB recorded an increase with increase of concentration in water and clam samples.

Bio-chemical changes associated with processing of shell fishes and flavour constituents of body meat and claw meat'of crab

In this thesis all these aspects are taken into consideration. Extensive studies were conducted on all aspects of processing of crabs, mussels and clams. The species taken for studies are commercially used ones namely Scylla sereta, perna viridis, and villorita cyprinoids. In Chapter 4.1 with regard to crab) the following aspects on their handling and processing are reported seasonal variation of chemical constituents, changes taking place during ice storage, freezing, canning etc. In Chapter 4._2 with regard to mussel, the relation between age (size) and chemical constituents, changes taking place during ice storage, freezing, canning etc. are reported and in Chapter 4.3 the changes taking place in clam muscle during icing and freezing are reported and the ame rebility of ice stored clams for canning purpose is reported.The interference of high concentration of glycogen in mussel and clam muscles during the colour development of ribose (Me-jbaum's method) is observed and remedial step are taken to minimise the interference.

Studies On The Biology Of The Clam Sunetta Scripta (Linne), From The Subtidal Waters Of Cochin

Enhancement and culture of bivalves presents an opportunity to maximise and even increase production of many growing areas. Clam culture is less intensive both for capital and labour, involves simple farming and management techniques and is considered an efficient means of protein production. Clams are efficient converters of primary production and growth rate is fast with maximum production in 5-6 months. with culture, production is less influenced by poor recruitment. Stable production facilitates market development. Rivalves are being increasingly used in bio-medical research. Culture practices would ensure uninterrupted supplies of experimental material. Paucity of biological data restricts the development of efficient management and culture techniques of bivalves. This study was undertaken with a view to provide information on some aspects of biology of the bivalve S_. scripta which have hitherto been uninvestigated.