Clinical and epidemiological profile of blood donors with positive serology for viral hepatitis in southern Brazil

INTRODUCTION: Positive serological tests for hepatitis viruses B and C at blood banks are an important reason for blood deferral. Additionally, high residual risk for transfusing hepatitis-contaminated blood has been estimated in southern Brazil. This study aimed to identify risk factors for positive serological tests for viral hepatitis (VH) in blood donors (BD). METHODS: A case-control study included consecutive BD with positive serology for VH, between 2008 and 2009. Cases and controls (BD with negative serology for VH) were paired 1:1 by sex and donation date. Assessment of clinical and epidemiological characteristics related to viral hepatitis was conducted. RESULTS: Among 1,282 blood donors (641 cases and 641 controls), those with positive serology for viral hepatitis had higher mean age (p<0.001); higher proportion of replacement donation (p<0.001); first donation (p<0.001); and interviewer deferment (p=0.037), compared to controls. Furthermore, donors with positive tests were less regular donors (p<0.001), had less previous history of rejection (p=0.003) and showed lower hematocrit median before donation (p=0.019). Multivariate analysis demonstrated that age (OR=1.056, 95%CI 1.042-1.069, p<0.001), replacement donation (OR=1.545, 95%CI 1.171-2.038, p=0.002) and first donation (OR=9.931, 95%CI 7.486-13.173, p<0.001) were independently associated with positivity of serological tests for viral hepatitis. CONCLUSIONS: Specific characteristics of blood donors were associated with positive serology for viral hepatitis. These peculiarities should be taken into account when assessing candidates for blood donation.

Improving downstream processing for viral vectors and viral vaccines

Viral vectors are playing an increasingly important role in the vaccine and gene therapy elds. The broad spectrum of potential applications, together with expanding medical markets, drives the e orts to improve the production processes for viral vaccines and viral vectors. Developing countries, in particular, are becoming the main vaccine market. It is thus critical to decrease the cost per dose, which is only achievable by improving the production process. In particular advances in the upstream processing have substantially increased bioreactor yields, shifting the bioprocess bottlenecks towards the downstream processing. The work presented in this thesis aimed to develop new processes for adenoviruses puri cation. The use of state-of-the-art technology combined with innovative continuous processes contributed to build robust and cost-e ective strategies for puri cation of complex biopharmaceuticals.(...)

Quantification of HIV-1 viral RNA in the blood in needles used for venous puncture in HIV-infected individuals

INTRODUCTION: Occupational HIV infection among healthcare workers is an important issue in exposures involving blood and body fluids. There are few data in the literature regarding the potential and the duration of infectivity of HIV type 1 (HIV-1) in contaminated material under adverse conditions. METHODS: We quantified HIV-1 viral RNA in 25×8mm calibre hollow-bore needles, after punctures, in 25 HIV-1-infected patients selected during the sample collection. All of the patients selected were between the ages of 18 and 55. Five samples were collected from 16 patients: one sample for the immediate quantification of HIV-1 RNA in the plasma and blood samples from the interior of 4 needles to be analyzed at 0h, 6h, 24h, and 72h after collection. In nine patients, another test was carried out in the blood from one additional needle, in which HIV-1 RNA was assessed 168h after blood collection. The method used to assess HIV-1 RNA was nucleic acid sequence-based amplification. RESULTS: Up to 7 days after collection, HIV-1 RNA was detected in all of the needles. The viral RNA remained stable up to 168h, and there were no statistically significant differences among the needle samples. CONCLUSIONS: Although the infectivity of the viral material in the needles is unknown, the data indicate the need to re-evaluate the practices in cases of occupational accidents in which the source is not identified.

Epidemiology of the viral hepatitis B and C in female prisoners of Metropolitan Regional Prison Complex in the State of Goiás, Central Brazil

INTRODUCTION: Little information regarding hepatitis B virus (HBV) and hepatitis C virus (HCV) infections among Brazilian female prisoners exists. This study investigated the prevalence and risk factors associated with HBV and HCV infections and identified viral genotypes among female prisoners in Goiás, Central Brazil. METHODS: Women incarcerated in the largest prison in the State of Goiás were invited to participate in the study. All female prisoners were interviewed and tested for the detection of hepatitis B surface antigen (HBsAg), antibodies against HBsAg (anti-HBs), against hepatitis B core antigen (anti-HBc), and antibody against HCV (anti-HCV) by ELISA. HBsAg and anti-HCV positive samples were tested for HBV DNA and HCV RNA and genotyped, respectively. RESULTS: Participants (n=148; 98.6%) completed the study with an overall HBV prevalence of 18.9%. Age >30 years, a low education level, sex with a sexually transmitted diseases carrier, and a male sexual partner serving in the same penitentiary were associated with HBV infections. Only 24% of the women were anti-HBs positive suggesting previous HBV vaccination. Nine female prisoners (6.1%) were anti-HCV positive. Age >40 years, injecting drug use and length of incarceration were statistically associated with anti-HCV antibodies. Five samples were HCV RNA positive and classified as genotypes 1 (subtypes 1a; n=3 and 1b; n=1) and 3 (subtype 3a; n=1). The HBsAg-reactive sample was HBV DNA positive and genotype A. CONCLUSIONS: These findings highlight the necessity of public policies to control hepatitis B and C infections and emphasize the importance of hepatitis B vaccination in prison environments.

Positive serology for viral hepatitis and donor self-exclusion in Southern Brazil

Introduction Despite the great advances in serological testing for transfusion-transmitted infections, the selection of blood donors by blood bank operators remains the only way to avoid transmission within the testing window period. Part of this selection is the self-exclusion form, on which the donors can exclude their blood from donation without any explanation. This study assessed the clinical and epidemiological characteristics related to positivity for viral hepatitis and to the use of the confidential self-exclusion (CSE) form. Methods This transversal study analyzed the data collected from blood donors' files in a hospital in Southern Brazil. Univariate and multivariate analyses identified the clinical and epidemiological variables related to positive serologies of viral hepatitis and to whether the donor was self-excluded. Results Of the 3,180 donors included in this study, 0.1% tested positive for HBsAg, 2.1% for anti-HBc, and 0.9% for anti-HCV. When the 93 donors with positive serologies for viral hepatitis were compared with those who were negative, a greater proportion of the positive serology group was found to have had a history of blood transfusions (OR=4.908; 95%CI=1.628 - 14.799; p<0.01), had repeatedly donated (OR=2.147; 95%CI=1.236 - 3.729; p<0.01), and used the CSE form for self-exclusion (OR=7.139; 95%CI=2.045 - 24.923; p<0.01). No variables were independently associated with self-exclusion. Conclusions A history of blood transfusion, repeated donations, and self-exclusion are factors that should be considered during viral hepatitis screenings in blood banks.

Association between histological findings, aminotransferase levels and viral genotype in chronic hepatitis C infection

Introduction: The genomic heterogeneity of hepatitis C virus (HCV) influences liver disorders. This study aimed to determine the prevalence of HCV genotypes and to investigate the influence of these genotypes on disease progression. Methods: Blood samples and liver biopsies were collected from HCV-seropositive patients for serological analysis, biochemical marker measurements, HCV genotyping and histopathological evaluation. Results: Hepatitis C virus-ribonucleic acid (HCV-RNA) was detected in 107 patients (90.6% with genotype 1 and 9.4% with genotype 3). Patients infected with genotype 1 exhibited higher mean necroinflammatory activity and fibrosis. Conclusions: HCV genotype 1 was the most prevalent and was associated with greater liver dysfunction.

Viral epidemiology of respiratory infections among children at a tertiary hospital in Southern Brazil

Introduction This study reports the pediatric epidemiology of respiratory syncytial virus (RSV), influenza (IF), parainfluenza (PIV), and adenovirus (ADV) at Hospital de Clínicas de Porto Alegre. Methods Cases of infection, hospitalizations in intensive care units (ICUs), nosocomial infections, and lethality rates were collected from 2007 to 2010. Results RSV accounted for most nosocomial infections. Intensive care units admission rates for ADV and RSV infections were highest in 2007 and 2010. During 2008-2009, H1N1 and ADV had the highest ICU admission rates. ADV had the highest fatality rate during 2007-2009. Conclusions Each virus exhibited distinct behavior, causing hospitalization, outbreaks, or lethality.

Clinical and epidemiological profile of female blood donors with positive serology for viral hepatitis B

ABSTRACTINTRODUCTION:Since women are frequently the minority among blood donors worldwide, studies evaluating this population usually reflect male features. We assessed the features of female blood donors with positive serology for HBV and compared them with those of men.METHODS The study comprised consecutive blood donors referred to a specialized liver disease center to be evaluated due to HBsAg- and/or anti-HBc-positive tests.RESULTS: The study encompassed 1,273 individuals, 219 (17.2%) of whom were referred due to positive HBsAg test and 1,054 (82.8%) due to reactive anti-HBc test. Subjects' mean age was 36.8±10.9 years, and 28.7% were women. Female blood donors referred for positive HBsAg screening tests demonstrated higher prevalence of healthcare workers (9.3% vs 2.5%) and lower prevalence of sexual risk behaviors (15.1% vs 41.1%) and alcohol abuse (1.9% vs 19.8%) compared to men. Women had lower ALT (0.6 vs 0.8×ULN), AST (0.6 vs 0.8×ULN), direct bilirubin (0.2 vs 0.3mg/dL), and alkaline phosphatase (0.5 vs 0.6×ULN) levels and higher platelet count (223,380±50,293 vs 195,020±53,060/mm3). Women also had a higher prevalence of false-positive results (29.6% vs 17.0%). No differences were observed with respect to liver biopsies. Female blood donors referenced for reactive anti-HBc screening tests presented similar clinical, epidemiological, and biochemical characteristics to those reported for positive HBsAg screening tests and similarly had a higher prevalence of false-reactive results.CONCLUSIONS: Compared to men, female blood donors with positive HBsAg and/or anti-HBc screening tests demonstrated higher prevalence of professional risk and false-positive results and reduced alteration of liver chemistry.

Engineering modular viral scaffolds for targeted bacterial population editing

Bacteria are central to human health and disease, but existing tools to edit microbial consortia are limited. For example, broad-spectrum antibiotics are unable to precisely manipulate bacterial communities. Bacteriophages can provide highly specific targeting of bacteria, but assembling well-defined phage cocktails solely with natural phages can be a time-, labor- and cost-intensive process. Here, we present a synthetic biology strategy to modulate phage host ranges by engineering phage genomes in Saccharomyces cerevisiae. We used this technology to redirect Escherichia coli phage scaffolds to target pathogenic Yersinia and Klebsiella bacteria, and conversely, Klebsiella phage scaffolds to target E. coli by modular swapping of phage tail components. The synthetic phages achieved efficient killing of their new target bacteria and were used to selectively remove bacteria from multi-species bacterial communities with cocktails based on common viral scaffolds. We envision this approach accelerating phage biology studies and enabling new technologies for bacterial population editing.

High-level of viral genomic diversity in cervical cancers: a Brazilian study on human papillomavirus type 16

Invasive cervical cancer (ICC) is the third most frequent cancer among women worldwide and is associated with persistent infection by carcinogenic human papillomaviruses (HPVs). The combination of large populations of viral progeny and decades of sustained infection may allow for the generation of intra-patient diversity, in spite of the assumedly low mutation rates of PVs. While the natural history of chronic HPVs infections has been comprehensively described, within-host viral diversity remains largely unexplored. In this study we have applied next generation sequencing to the analysis of intra-host genetic diversity in ten ICC and one condyloma cases associated to single HPV16 infection. We retrieved from all cases near full-length genomic sequences. All samples analyzed contained polymorphic sites, ranging from 3 to 125 polymorphic positions per genome, and the median probability of a viral genome picked at random to be identical to the consensus sequence in the lesion was only 40%. We have also identified two independent putative duplication events in two samples, spanning the L2 and the L1 gene, respectively. Finally, we have identified with good support a chimera of human and viral DNA. We propose that viral diversity generated during HPVs chronic infection may be fueled by innate and adaptive immune pressures. Further research will be needed to understand the dynamics of viral DNA variability, differentially in benign and malignant lesions, as well as in tissues with differential intensity of immune surveillance. Finally, the impact of intralesion viral diversity on the long-term oncogenic potential may deserve closer attention.

ETIOLOGÍA E IMPORTANCIA ECONÓMICA DE UNA NUEVA ENFERMEDAD VIRAL DE BATATA EN LA PROVINCIA DE CÓRDOBA

La batata se ubica en el séptimo lugar como cultivo destinado a la alimentación humana, y en el quinto luego de arroz, trigo, maíz y mandioca. Globalmente, existen 8 millones de hectáreas plantadas con batata y, aproximadamente el 95% de esa superficie se ubica en más de un centenar de países en desarrollo. En Argentina, la región pampeana (Buenos Aires, Córdoba y Santa Fe) y el NEA representan el 83% de la superficie plantada. Córdoba y Buenos Aires constituyen las principales provincias productoras. A pesar de su importancia potencial en la alimentación humana y animal, como producto exportable y para industrialización, se viene registrando una marcada reducción en el área cultivada con esta hortícola y, entre las causas más relevantes que determinan este fenómeno, se encuentran las enfermedades virales. Históricamente estas patologías han sido la principal limitante en la producción de este cultivo en Argentina y, especialmente en Córdoba. Recientemente y, tras brindar solución al grave problema ocasionado por el “enanismo clorótico” (Sweet potato chlorotic dwarf disease), virosis que afectó al cv Morada INTA en la década del 90, se observó, en nuestra provincia, la aparición de una severa sintomatología viral en lotes de producción implantados con el cv Arapey INIA, genotipo de creciente difusión en el cultivo por sus buenas características agronómicas. En virtud de dicha sintomatología, se sugiere que en la nueva patología viral se halla involucrado más de un agente etiológico y que la misma produce daños económicos en la producción de Arapey INIA. Por otra parte, la identificación de el/los virus presentes en la nueva patología es el primer eslabón para la búsqueda de resistencia a los mismos. Se supone, además, que, en germoplasma selecto de batata existen fuentes de resistencia a el/los virus involucrados y, que, al menos uno de los agentes patógenos de esta virosis de Arapey INIA, es transmitido por moscas blancas. Se propone, como paso inicial para el control de la nueva etiología: caracterizar biológica, serológica y molecularmente a el/los virus involucrados en ella; preparar reactivos de diagnóstico para los mismos y evaluar la gravedad de esta virosis a través de la estimación de su incidencia, prevalencia y severidad y de los daños que provoca sobre los componentes de rendimiento, en zonas productoras de la provincia de Córdoba. Por otra parte y, debido a que una de las principales formas de control de estas enfermedades es a través del empleo de germoplasma resistente y, considerando que la mayoría de los cultivares comerciales de batata, incluído Arapey INIA poseen escasa variabilidad genética por ser monoclonales, se pretende explorar molecularmente para genes de resistencia en aproximadamente 30 genotipos (clones) promisorios procedentes de la EEA INTA San Pedro ( Bs.As.), empleados como parentales en policruzamientos, además de hacerlo en el genotipo bajo estudio (Arapey INIA).

Enfermedades de origen viral u ocasionadas por mollicutes en los nuevos escenarios del cultivo en la provincia de Córdoba.

Argentina es el tercer exportador mundial de maíz luego de Estados Unidos y Brasil. La estimación de la campaña 2009/10 indica que la producción mundial de maíz alcanzaría los 832,37 millones de toneladas, cerca de 23 millones de toneladas más que lo cosechado durante la campaña anterior y 21 millones de toneladas mas que lo cosechado en la campaña récord de 2007/08 (USDA, 2010). La cosecha de maíz 2009/10 en Argentina sería récord, llegando a los 22,5 millones de toneladas lo que significaría un incremento de 53% respecto de la campaña anterior, igualando el récord de la campaña 2006/07. El aumento de la potencialidad de rendimiento se concibe desde un cultivo sin incidencia de enfermedades. La predicción de la ocurrencia y del riesgo de daño asociado a las enfermedades de los cultivos a gran escala, la determinación del riesgo de distribución de pestes exóticas o emergentes en la agricultura sustentable, la evaluación de riesgo/beneficio del control biológico y la evaluación de enfermedades asociadas con el calentamiento global o el cambio de prácticas culturales son tópicos importantes en la ciencia agropecuaria moderna. Las enfermedades del maíz, en especial las producidas por virus y mollicutes se han incrementado en los últimos años debido, entre otras causas, al cultivo continuo desde el norte del país y países vecinos desde donde migran los vectores, a los cultivares de alto rendimiento que en muchos casos son susceptibles a estos patógenos y en gran medida a los cambios climáticos globales que generan que virosis de zonas tropicales y subtropicales se extiendan a zonas templadas. El principal enfoque para el control es el conocimiento del ciclo epidemiológico de la enfermedad ubicado para cada ambiente. En este marco es que desde el Departamento de Graduados de la Fac. de Cs. Agropecuarias, junto con la Secretaría de Extensión surgió la necesidad de la transferencia de los resultados de la investigación. Los conocimientos adquiridos en investigación hasta el presente, en toda la extensión de la Provincia de Córdoba, servirán a profesionales asesores, empresas semilleras y de insumos agropecuarios, productores y estudiantes próximos a graduarse a conocer estas enfermedades, sus vectores, las condiciones predisponentes y tener acceso a información actualizada para lograr su manejo con medidas preventivas desde el momento de la compra de los insumos agropecuarios, el sistema de labranza y de las fechas de siembra. Entrenar al productor para que adquiera esta habilidad le permitirá escapar a pérdidas de hasta 60% del lote, como son las producidas en la Provincia por algunas virosis como el Mal de Río Cuarto (March et al., 1993, Gaceta agronómica 76: 384), o pérdidas no perceptibles pero reales, de 14% en plantas con esta enfermedad respecto a plantas sanas (Ornaghi et a., 1995, IX J. Fitosanitarias Argentinas: 84). Otras virosis, como el mosaico común, no producen grandes epidemias sino son incidiosas, están presentes todos los años con pérdidas de producción a niveles tan significativos como 5,5 qq/ha e incidencias de hasta 44% en la Provincia (Lenardón y Giolitti, 1999, Proyecto de Investig. en Fitovirología INTA-JICA) y requiere certificación sanitaria para la exportación del grano pues se transmite por semilla. Por su parte, mollicutes emergentes como el Corn stunt spiroplasma, se han detectado en Córdoba con incidencias de 61% en lotes de Justiniano Posse y de 80% en Sarmiento, habiéndose detectado en la campaña 2009/10 en 4 localidades de la Provincia. Virosis re-emergentes como el MCMV, que produce necrosis letal del maíz en sinergismo con otras virosis, han hecho su reaparición con niveles de hasta 18% de infección. Reconocer sus síntomas y conocer las formas de dispersión y transmisión permitirá al profesional y al productor la evaluación del problema y tomar medidas de prevención y manejo de estas enfermedades para lograr los rendimientos esperados.

Molecular biological analysis of dynamic interactions between influenza viruses and host cells : host cell proteomes and viral replication dynamics

Magdeburg, Univ., Fak. für Verfahrens- und Systemtechnik, Diss., 2011

Quantitative method of viral pollution determination for large volume of water using ferric hydroxide gel impregnated on the surface of glassfibre cartridge

Quantitative method of viral pollution determination for large volume of water using ferric hydroxide gel impregnated on the surface of glassfibre cartridge filter. The use of ferric hydroxide gel, impregnated on the surface of glassfibre cartridge filter enable us to recover 62.5% of virus (Poliomylitis type I, Lsc strain) exsogeneously added to 400 liters of tap-water. The virus concentrator system consists of four cartridge filters, in which the three first one are clarifiers, where the contaminants are removed physically, without significant virus loss at this stage. The last cartridge filter is impregnated with ferric hydroxide gel, where the virus is adsorbed. After the required volume of water has been processed, the last filter is removed from the system and the viruses are recovered from the gel, using 1 liter of glycine/NaOH buffer, at pH 11. Immediately the eluate is clarified through series of cellulose acetate membranes mounted in a 142mm Millipore filter. For the second step of virus concentration, HC1 1N is added slowly to the eluate to achieve pH 3.5-4. MgC1, is added to give a final concentration of 0.05M and the viruses are readsorbed on a 0.45 , porosity (HA) cellulose acetate membrane, mounted in a 90 mm Millipore filter. The viruses are recovered using the same eluent plus 10% of fetal calf serum, to a final volume of 3 ml. In this way, it was possible to concentrate virus from 400 liters of tap-water, into 1 liter in the first stage of virus concentration and just to 3 ml of final volume in a second step. The efficiency, simplicity and low operational cost, provded by the method, make it feasible to study viral pollution of recreational and tap-water sources.

The viral nature of Toddia França, 1912

Toddia França, 1912 under the light microscope occurs as inclusion corpuscles in the cytoplasm of erythrocytes of cold-blooded vertebrates sometimes accompanied by crystalloid bodies. Its position among the protozoans or the viruses has been discussed by some authors, but remained unclear. To elucidate this problem we studied Toddia from a Brazilian frog (Leptodactylus ocellatus) by electron microscopy. In the cytoplasm of the infected cells we found no protozoan, but rather virus-like particles often hexagonal in outline, averaging 195 nm excluding their two involving membranes, and presenting a central area of variable electron density. Particles at different stages of development were generally found around or on area lighter density than the cytoplasm. which resembled a virus synthesis site. At high magnification, the nuclear or cytoplasmic crystals allied to Toddia resembled the crystalline lattice of the inclusion bodies associated with the polyhedrosis viruses and poxviruses from insects, of the capsules of granulosis viruses and of other protein crystals in ultrathin sections. Cytochemical tests in Toddia corpuscles displayed exclusively the presence of deoxyribonucleic acid. These findings indicate that Toddia is not a protozoan and demonstrate that it is in all probability a viral inclusion corpuscle. Taking into account the nucleic acid type found in its structure (DNA) and the hexagonal shape usually shown in ultrathin sections by its component particles, which have a cytoplasmic site of synthesis and assembly, we tentatively relate Toddia with the so-called "Icosahedral Cytoplasmic Deoxyriboviruses". We believe that the present paper gives the first report of virus-like particles in L. ocellatus.