Efeitos do espaço e do ambiente sobre assembleias de peixes de igarapés da Amazônia oriental

Os igarapés amazônicos podem apresentar características ambientais rigorosas para diversas espécies de peixes devido à sua condição oligotrófica. Apesar disso, estes cursos d’água detêm uma ictiofauna rica e diversificada, que ocupa uma grande variedade de microhábitats nos igarapés. Em sistemas de lagos de ria, os rios e igarapés sofrem um represamento natural e passam a ter baixos valores de correnteza, o que pode tornar esses ambientes mais homogêneos, já que a correnteza afeta diversas características dos igarapés. Nesse caso, a distância entre os igarapés poderia ser um dos principais fatores estruturadores das assembleias de peixes. Este trabalho teve como objetivo analisar a influência do espaço e do ambiente sobre a estrutura das assembleias de peixes de igarapés afogados em Caxiuanã, na Amazônia Oriental. As coletas de peixes foram realizadas durante o período da seca de 2010, abrangendo 34 trechos de igarapés. Foram mensurados oito fatores abióticos para testar os efeitos das características ambientais locais. Para analisar os efeitos do espaço, foram calculados filtros espaciais a partir das coordenadas geográficas, bem como a distância fluvial entre os trechos. As análises mostraram que o ambiente foi o único fator a influenciar a diversidade beta, refutando a hipótese do espaço enquanto fator estruturador e reforçando o papel do nicho ecológico na distribuição das espécies. Apesar disso, os fatores abióticos explicaram uma porcentagem baixa da variação na composição das espécies de peixe, o que mostra que outras variáveis podem afetar essas assembleias.

Recursos alimentares e local de forrageio de três espécies de Helicops wagler, 1830 (Serpentes: Dipsadidae) na Amazônia Oriental, Brasil

Espécies filogeneticamente aparentadas, que coexistem no ambiente com semelhanças na utilização dos recursos, são potencialmente competidoras. Assim, espera-se que apresentem diferenciação em algum dos principais eixos do nicho ecológico. Helicops angulatus, H. hagmanni e H. polylepis são cobras d’água abundantes no estado do Pará, Amazônia Oriental, e podem ser sintópicas, o que sugere que estas espécies apresentem alguma variação na dieta ou no local de forrageio. Esse estudo teve o objetivo de verificar variações na composição da dieta, a amplitude e sobreposição de nicho trófico, bem como variações no local de forrageio, baseadas em características ecomorfológicas dos peixes consumidos por três espécies de cobras d’água na Amazônia Oriental, Pará. Verificamos que a dieta das três espécies de Helicops é semelhante, contudo, as proporções em que os itens são consumidos diferem. Helicops angulatus é a espécie mais generalista e H. hagmanni a mais especialista, e a sobreposição alimentar entre as três espécies foi intermediária. De acordo com os dados ecomorfológicos dos peixes consumidos por H. angulatus, H. hagmanni e H. polylepis pôde-se concluir que estas espécies forrageiam os mesmos ambientes em meio aquático, principalmente microhábitats de águas lênticas nos estratos médio e superior da coluna d’água. A coexistência dessas espécies pode estar sendo favorecida pela abundância dos recursos consumidos.

Distributional potential of the Triatoma brasiliensis species complex at present and under scenarios of future climate conditions

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

O Fisicalismo revisitado pela Filosofia Ecológica: as affordances sociais

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Applying spatial analysis of genetic and environmental data to predict connection corridors to the New World screwworm populations in South America

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Tracking climatically suitable areas for an endemic Cerrado snake under climate change

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estimativa dos impactos das mudanças climáticas na distribuição das espécies montanas do gênero Brachycephalus (Amphibia: anura) através da modelagem de nicho ecológico

The genus Brachycephalus is endemic to the Atlantic rainforest and is distributed mainly in the southeastern and southern Brazil. Currently, it has 17 recognized species, most of them, associated with mountainous habitats along the Serra do Mar and Serra da Mantiqueira ridges. Here we use an ecological niche modelling approach based on climatic variables, to assess the potential niche of the mountainous species of this genus. The model generated was then projected to future scenarios considering the last IPCC report, in order to estimate the impacts of climate changes on these species distribution. Results show a decrease in the total suitable area for the mountainous Brachycephalus species, as well as tendencies already observed for other organisms, such as, pole and upward migrations. A southern area on Planalto de Paranapiacaba increases in suitability for these species. We suggest special efforts on new surveys and conservation on the northern part of their distribution, once this seems to be the region more affected by climate changes on the projected scenarios

Proteomic analysis of the rare Uracoan rattlesnake Crotalus vegrandis venom: evidence of a broad arsenal of toxins

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

In vitro antifungal susceptibility of candida albicans isolates from patients with chronic periodontitis and diabetes

Alterations that lead to deficiency of the immune system, such as diabetes mellitus, may promote proliferation of Candida albicans and selection of strains which have greater ability to adhere and to penetrate the host tissues. Recent studies indicate an increase of the antifungal resistance of C. albicans isolates in periodontal pockets, suggesting that the oral cavity could be a reservoir of resistant yeast to antifungal agents. Moreover, oral cavity can act as a reservoir of certain pathogens that may cause systemic infections. The periodontal pocket is an ecological niche suitable to host microorganisms that could act as opportunistic pathogens. The aim of this study is to contribute to the understanding of resistance to conventional antifungal against C. albicans isolates from patients with periodontitis and diabetes. The determination of the minimal inhibitory concentrations (MIC) was evaluated according to M27S3 of the CLSI (2008), with modifications. The results showed that 48.8% of the studied strains were resistant to one or more antifungals and 6.6% were resistant to fluconazole and voriconazole. These results suggest an increasing resistance to conventional antifungal agents among Candida species, suggesting that the oral cavity could host pathogen fungi.

Modeling the Potential Geographic Distribution of Black Pepper (Piper nigrum) in Asia Using GIS Tools

Known as the "king of spices", black pepper (Piper nigrum), a perennial crop of the tropics, is economically the most important and the most widely used spice crop in the world. To understand its suitable bioclimatic distribution, maximum entropy based on ecological niche modeling was used to model the bioclimatic niches of the species in its Asian range. Based on known occurrences, bioclimatic areas with higher probabilities are mainly located in the eastern and western coasts of the Indian Peninsula, the east of Sumatra Island, some areas in the Malay Archipelago, and the southeast coastal areas of China. Some undocumented places were also predicted as suitable areas. According to the jackknife procedure, the minimum temperature of the coldest month, the mean monthly temperature range, and the precipitation of the wettest month were identified as highly effective factors in the distribution of black pepper and could possibly account for the crop's distribution pattern. Such climatic requirements inhibited this species from dispersing and gaining a larger geographical range.

Desafios atuais da modelagem preditiva de distribuição de espécies

A modelagem preditiva tem sido aplicada para analisar a distribuição geográfica de espécies, a partir de extrapolações das características ambientais dos locais conhecidos de ocorrência. O interesse por esse tipo de modelagem deve-se à necessidade de respostas rápidas e fundamentadas para as ameaças que as espécies têm enfrentado, devido à perda de habitat, invasão de espécies exóticas, mudanças climáticas, entre outros. Este artigo oferece uma visão geral dos avanços recentes no campo da modelagem e visa incentivar a discussão e aplicação desse método, que pode auxiliar tanto na aquisição de conhecimento básico sobre a biologia das espécies, quanto na análise e formulação de políticas para sua conservação.

Rekonstruktion der eiszeitlichen Verbreitung und Artbildung vier alpiner Primeln durch Artenverbreitungsmodelle und Phylogeographie

Aim: Previous studies revealed that diversification events in the western clade of the alpine Primula sect. Auricula were concentrated in the Quaternary cold periods. This implies that allopatric speciation in isolated glacial refugia was the most common mode of speciation. In the first part of the present dissertation, this hypothesis is further investigated by locating refugial areas of two sister species, Primula marginata & P. latifolia during the last glacial maximum, 21,000 years ago. In the second part, the glacial and postglacial history of P. hirsuta and P. daonensis is investigated. Location: European Alps. Methods: Glacial refugia were located using species distribution models, which are projected to last glacial maximum climate. These refugia are validated with geographic distribution patterns of intra-specific genetic diversity, rarity and variation. Results 1) Speciation: Glacial refugia of the sister taxa Primula marginata and P. latifolia were largely separated, only a small overlapping zone at the southern margin of the former glacier in the Maritime Alps exists. This overlapping zone is too small to indicate sympatric speciation. The largely separated glacial distribution of both species rather confirms our hypothesis of allopatric speciation in isolated glacial refugia. Results 2) Glacial and postglacial history: Surprizingly, the modelled potential refugia of three out of four Primula species are situated within the former ice-shield, except for P. marginata. This indicates that peripheral and central nunataks played an important role for the glacial survival in P. latifolia, P. hirsuta and P. daonensis, while peripheral refugia outside the maximum extend of the glacier were crucial in P. marginata. In P. hirsuta and P. latifolia SDMs allowed to exclude several hypothetical refugial areas that overlap with today’s distribution as potential refugia for the species. In P. marginata, hypothetical refugial areas at the periphery of the former ice-shield that overlap with today’s distribution were confirmed by the models. The results from the SDMs are confirmed by population genetic patterns in three out of four species. P. daonensis represents an exception, where population genetic data contradict the SDMs. Main conclusions: Species distribution models provide species specific scenarios of glacial distribution and postglacial re-colonization, which can be validated using population genetic analyses. This combined approach is useful and helps to understand the complex processes that have lead to the genetic and floristic patterns of biodiversity that is found today in the Alps.

Analysis of coprolites from the extinct mountain goat Myotragus balearicus

Humans colonized the Balearic Islands 5-4 ka ago. They arrived in a uniquely adapted ecosystem with the Balearic mountain goat Myotragus balearicus (Bovidae, Antilopinae, Caprini) as the only large mammal. This mammal went extinct rapidly after human arrival. Several hypotheses have been proposed to explain the extinction of M. balearicus. For the present study ancient DNA analysis (Sanger sequencing, Roche-454, Ion Torrent), and pollen and macrofossil analyses were performed on preserved coprolites from M. balearicus, providing information on its diet and paleo-environment. The information retrieved shows that M. balearicus was heavily dependent on the Balearic box species Buxus balearica during at least part of the year, and that it was most probably a browser. Hindcast ecological niche modelling of B. balearica shows that local distribution of this plant species was affected by climate changes. This suggests that the extinction of M. balearicus can be related to the decline and regional extinction of a plant species that formed a major component of its diet. The vegetation change is thought to be caused by increased aridity occurring throughout the Mediterranean. Previous hypotheses relating the extinction of M. balearicus directly to the arrival of humans on the islands must therefore be adjusted. (C) 2013 University of Washington. Published by Elsevier Inn All rights reserved.

Mycobacterium ulcerans persistence at a village water source of Buruli ulcer patients

Buruli ulcer (BU), a neglected tropical disease of the skin and subcutaneous tissue, is caused by Mycobacterium ulcerans and is the third most common mycobacterial disease after tuberculosis and leprosy. While there is a strong association of the occurrence of the disease with stagnant or slow flowing water bodies, the exact mode of transmission of BU is not clear. M. ulcerans has emerged from the environmental fish pathogen M. marinum by acquisition of a virulence plasmid encoding the enzymes required for the production of the cytotoxic macrolide toxin mycolactone, which is a key factor in the pathogenesis of BU. Comparative genomic studies have further shown extensive pseudogene formation and downsizing of the M. ulcerans genome, indicative for an adaptation to a more stable ecological niche. This has raised the question whether this pathogen is still present in water-associated environmental reservoirs. Here we show persistence of M. ulcerans specific DNA sequences over a period of more than two years at a water contact location of BU patients in an endemic village of Cameroon. At defined positions in a shallow water hole used by the villagers for washing and bathing, detritus remained consistently positive for M. ulcerans DNA. The observed mean real-time PCR Ct difference of 1.45 between the insertion sequences IS2606 and IS2404 indicated that lineage 3 M. ulcerans, which cause human disease, persisted in this environment after successful treatment of all local patients. Underwater decaying organic matter may therefore represent a reservoir of M. ulcerans for direct infection of skin lesions or vector-associated transmission.

Bacillus anthracis Diversity and Geographic Potential across Nigeria, Cameroon and Chad: Further Support of a Novel West African Lineage.

Zoonoses, diseases affecting both humans and animals, can exert tremendous pressures on human and veterinary health systems, particularly in resource limited countries. Anthrax is one such zoonosis of concern and is a disease requiring greater public health attention in Nigeria. Here we describe the genetic diversity of Bacillus anthracis in Nigeria and compare it to Chad, Cameroon and a broader global dataset based on the multiple locus variable number tandem repeat (MLVA-25) genetic typing system. Nigerian B. anthracis isolates had identical MLVA genotypes and could only be resolved by measuring highly mutable single nucleotide repeats (SNRs). The Nigerian MLVA genotype was identical or highly genetically similar to those in the neighboring countries, confirming the strains belong to this unique West African lineage. Interestingly, sequence data from a Nigerian isolate shares the anthrose deficient genotypes previously described for strains in this region, which may be associated with vaccine evasion. Strains in this study were isolated over six decades, indicating a high level of temporal strain stability regionally. Ecological niche models were used to predict the geographic distribution of the pathogen for all three countries. We describe a west-east habitat corridor through northern Nigeria extending into Chad and Cameroon. Ecological niche models and genetic results show B. anthracis to be ecologically established in Nigeria. These findings expand our understanding of the global B. anthracis population structure and can guide regional anthrax surveillance and control planning.