Diffractive optics-based heterodyne-detected four-wave mixing signals of protein motion: From “protein quakes” to ligand escape for myoglobin

Ligand transport through myoglobin (Mb) has been observed by using optically heterodyne-detected transient grating spectroscopy. Experimental implementation using diffractive optics has provided unprecedented sensitivity for the study of protein motions by enabling the passive phase locking of the four beams that constitute the experiment, and an unambiguous separation of the Real and Imaginary parts of the signal. Ligand photodissociation of carboxymyoglobin (MbCO) induces a sequence of events involving the relaxation of the protein structure to accommodate ligand escape. These motions show up in the Real part of the signal. The ligand (CO) transport process involves an initial, small amplitude, change in volume, reflecting the transit time of the ligand through the protein, followed by a significantly larger volume change with ligand escape to the surrounding water. The latter process is well described by a single exponential process of 725 ± 15 ns at room temperature. The overall dynamics provide a distinctive signature that can be understood in the context of segmental protein fluctuations that aid ligand escape via a few specific cavities, and they suggest the existence of discrete escape pathways.

Foreign glycoproteins expressed from recombinant vesicular stomatitis viruses are incorporated efficiently into virus particles.

In a previous study we demonstrated that vesicular stomatitis virus (VSV) can be used as a vector to express a soluble protein in mammalian cells. Here we have generated VSV recombinants that express four different membrane proteins: the cellular CD4 protein, a CD4-G hybrid protein containing the ectodomain of CD4 and the transmembrane and cytoplasmic tail of the VSV glycoprotein (G), the measles virus hemagglutinin, or the measles virus fusion protein. The proteins were expressed at levels ranging from 23-62% that of VSV G protein and all were transported to the cell surface. In addition we found that all four proteins were incorporated into the membrane envelope of VSV along with the VSV G protein. The levels of incorporation of these proteins varied from 6-31% of that observed for VSV G. These results suggest that many different membrane proteins may be co-incorporated quite efficiently with VSV G protein into budding VSV virus particles and that specific signals are not required for this co-incorporation process. In fact, the CD4-G protein was incorporated with the same efficiency as wild type CD4. Electron microscopy of virions containing CD4 revealed that the CD4 molecules were dispersed throughout the virion envelope among the trimeric viral spike glycoproteins. The recombinant VSV-CD4 virus particles were about 18% longer than wild type virions, reflecting the additional length of the helical nucleocapsid containing the extra gene. Recombinant VSVs carrying foreign antigens on the surface of the virus particle may be useful for viral targeting, membrane protein purification, and for generation of immune responses.

Intermediate hosts of Toxoplasma gondii and food safety:epidemiology, genetics and parasite survival in meat-producing animals in Italy

Toxoplasma gondii is a coccidian parasite with a global distribution. The definitive host is the cat (and other felids). All warm-blooded animals can act as intermediate hosts, including humans. Sexual reproduction (gametogony) takes place in the final host and oocysts are released in the environment, where they then sporulate to become infective. In intermediate hosts the cycle is extra-intestinal and results in the formation of tachyzoites and bradyzoites. Tachyzoites represent the invasive and proliferative stage and on entering a cell it multiplies asexually by endodyogeny. Bradyzoites within tissue cysts are the latent form. T. gondii is a food-borne parasite causing toxoplasmosis, which can occur in both animals and humans. Infection in humans is asymptomatic in more than 80% of cases in Europe and North-America. In the remaining cases patients present fever, cervical lymphadenopathy and other non-specific clinical signs. Nevertheless, toxoplasmosis is life threatening if it occurs in immunocompromised subjects. The main organs involved are brain (toxoplasmic encephalitis), heart (myocarditis), lungs (pulmonary toxoplasmosis), eyes, pancreas and parasite can be isolated from these tissues. Another aspect is congenital toxoplasmosis that may occur in pregnant women and the severity of the consequences depends on the stage of pregnancy when maternal infection occurs. Acute toxoplasmosis in developing foetuses may result in blindness, deformation, mental retardation or even death. The European Food Safety Authority (EFSA), in recent reports on zoonoses, highlighted that an increasing numbers of animals resulted infected with T. gondii in EU (reported by the European Member States for pigs, sheep, goats, hunted wild boar and hunted deer, in 2011 and 2012). In addition, high prevalence values have been detected in cats, cattle and dogs, as well as several other animal species, indicating the wide distribution of the parasite among different animal and wildlife species. The main route of transmission is consumption of food and water contaminated with sporulated oocysts. However, infection through the ingestion of meat contaminated with tissue cysts is frequent. Finally, although less frequent, other food products contaminated with tachyzoites such as milk, may also pose a risk. The importance of this parasite as a risk for human health was recently highlighted by EFSA’s opinion on modernization of meat inspection, where Toxoplasma gondii was identified as a relevant hazard to be addressed in revised meat inspection systems for pigs, sheep, goats, farmed wild boar and farmed deer (Call for proposals -GP/EFSA/BIOHAZ/2013/01). The risk of infection is more highly associated to animals reared outside, also in free-range or organic farms, where biohazard measure are less strict than in large scale, industrial farms. Here, animals are kept under strict biosecurity measures, including barriers, which inhibit access by cats, thus making soil contamination by oocysts nearly impossible. A growing demand by the consumer for organic products, coming from free-range livestock, in respect of animal-welfare, and the desire for the best quality of derived products, have all led to an increase in the farming of free-range animals. The risk of Toxoplasma gondii infection increases when animals have access to environment and the absence of data in Italy, together with need for in depth study of both the prevalence and genotypes of Toxoplasma gondii present in our country were the main reasons for the development of this thesis project. A total of 152 animals have been analyzed, including 21 free-range pigs (Suino Nero race), 24 transhumant Cornigliese sheep, 77 free-range chickens and 21 wild animals. Serology (on meat juice) and identification of T. gondii DNA through PCR was performed on all samples, except for wild animals (no serology). An in-vitro test was also applied with the aim to find an alternative and valid method to bioassay, actually the gold standard. Meat samples were digested and seeded onto Vero cells, checked every day and a RT-PCR protocol was used to determine an eventual increase in the amount of DNA, demonstrating the viability of the parasite. Several samples were alos genetically characterized using a PCR-RFLP protocol to define the major genotypes diffused in the geographical area studied. Within the context of a project promoted by Istituto Zooprofilattico of Pavia and Brescia (Italy), experimentally infected pigs were also analyzed. One of the aims was to verify if the production process of cured “Prosciutto di Parma” is able to kill the parasite. Our contribution included the digestion and seeding of homogenates on Vero cells and applying the Elisa test on meat juice. This thesis project has highlighted widespread diffusion of T. gondii in the geographical area taken into account. Pigs, sheep, chickens and wild animals showed high prevalence of infection. The data obtained with serology were 95.2%, 70.8%, 36.4%, respectively, indicating the spread of the parasite among numerous animal species. For wild animals, the average value of parasite infection determined through PCR was 44.8%. Meat juice serology appears to be a very useful, rapid and sensitive method for screening carcasses at slaughterhouse and for marketing “Toxo-free” meat. The results obtained on fresh pork meat (derived from experimentally infected pigs) before (on serum) and after (on meat juice) slaughter showed a good concordance. The free-range farming put in evidence a marked risk for meat-producing animals and as a consequence also for the consumer. Genotyping revealed the diffusion of Type-II and in a lower percentage of Type-III. In pigs is predominant the Type-II profile, while in wildlife is more diffused a Type-III and mixed profiles (mainly Type-II/III). The mixed genotypes (Type-II/III) could be explained by the presence of mixed infections. Free-range farming and the contact with wildlife could facilitate the spread of the parasite and the generation of new and atypical strains, with unknown consequences on human health. The curing process employed in this study appears to produce hams that do not pose a serious concern to human health and therefore could be marketed and consumed without significant health risk. Little is known about the diffusion and genotypes of T. gondii in wild animals; further studies on the way in which new and mixed genotypes may be introduced into the domestic cycle should be very interesting, also with the use of NGS techniques, more rapid and sensitive than PCR-RFLP. Furthermore wildlife can become a valuable indicator of environmental contamination with T. gondii oocysts. Other future perspectives regarding pigs include the expansion of the number of free-range animals and farms and for Cornigliese sheep the evaluation of other food products as raw milk and cheeses. It should be interesting to proceed with the validation of an ELISA test for infection in chickens, using both serum and meat juice on a larger number of animals and the same should be done also for wildlife (at the moment no ELISA tests are available and MAT is the reference method for them). Results related to Parma ham do not suggest a concerning risk for consumers. However, further studies are needed to complete the risk assessment and the analysis of other products cured using technological processes other than those investigated in the present study. For example, it could be interesting to analyze products such as salami, produced with pig meat all over the Italian country, with very different recipes, also in domestic and rural contexts, characterized by a very short period of curing (1 to 6 months). Toxoplasma gondii is one of the most diffuse food-borne parasites globally. Public health safety, improved animal production and protection of endangered livestock species are all important goals of research into reliable diagnostic tools for this infection. Future studies into the epidemiology, parasite survival and genotypes of T. gondii in meat producing animals should continue to be a research priority.

Considerações sobre os métodos de dimensionamento estrutural de pavimentos com camadas recicladas a frio com espuma de asfalto.

A reciclagem profunda com espuma de asfalto tem sido uma alternativa de sucesso para a restauração de pavimentos degradados. Em relação às soluções tradicionais de reabilitação, como os recapeamentos, tem a vantagem de proporcionar a correção de defeitos em camadas inferiores, com a manutenção ou pequena elevação do greide da pista, além de ganhos ambientais, como um menor consumo de materiais virgens da natureza e redução do volume de material descartado. Entretanto, no Brasil não há método para dimensionamento estrutural para esta tecnologia, o que dificulta seu emprego. Para o desenvolvimento de um procedimento de dimensionamento que contemple este tipo de solução, foram estudados métodos presentes na bibliografia internacional: guia da AASHTO de 1993 e Caltrans, dos EUA, TRL386 e TRL611, da Inglaterra, as duas versões do guia sul-africano TG2 e os métodos oriundos do Austroads, tanto o procedimento interino de 2011 como adaptações de órgãos da Austrália e Nova Zelândia. Observou-se divergência de opiniões quanto ao comportamento do material reciclado com espuma de asfalto. Alguns órgãos e autores consideram o comportamento do mesmo mais próximo às misturas asfálticas, sendo o mecanismo de falha o trincamento, e outros o definem como semelhante a um material granular modificado com alta coesão e ruptura devido às deformações permanentes. Correlaciona-se tal associação ao teor de espuma usualmente utilizado nas obras rodoviárias. Outros aspectos que se destacam para este tipo de base são o ganho de resistência ao longo do tempo devido à cura, mesmo com início da operação da rodovia e a importância da infraestrutura remanescente no dimensionamento. Tais fatos foram corroborados pelos estudos de caso e resultados do trecho experimental construído na Rodovia Ayrton Senna - SP 070, monitorado por meio de ensaios deflectométricos com FWD durante um ano. Como resultado do trabalho, foi proposto um procedimento para o dimensionamento estrutural de pavimentos com camadas recicladas a frio com espuma de asfalto utilizando dados deflectométricos que atende o método do Manual de Pavimentação do Departamento Nacional de Infraestrutura de Transportes (DNIT) e incorpora diferentes aspectos na análise mecanicista. Outras conclusões são a viabilidade técnica a longo prazo da solução mencionada e a importância do controle tecnológico, com ênfase para o monitoramento deflectométrico nos primeiros meses de operação do pavimento para averiguar a evolução da cura do material.

Comportamento mecânico e desempenho estrutural de materiais reciclados e estabilizados com espuma de asfalto.

Em busca de soluções estruturais para restauração de pavimentos rodoviários que que sejam eficientes, mas ao mesmo tempo que sejam econômicas e impactem o mínimo possível na dinâmica de operação da malha rodoviária, tem sido difundida a metodologia de reciclagem a frio de pavimentos com a estabilização com espuma de asfalto. A redução de custos devido a reutilização de material e a menor necessidade de transporte de insumos, além da possibilidade de realização da restauração em um curto espaço de tempo, têm contribuído para a crescente utilização do processo. Este trabalho tem como objetivo avaliar o desempenho e o comportamento mecânico de uma mistura reciclada estabilizada com espuma asfalto, para melhor entender os efeitos do confinamento e do teor de umidade do material, visto que este passa por um processo de cura quando já em serviço. Foi acompanhado um trecho experimental onde o pavimento foi restaurado com a aplicação de uma base reciclada estabilizada com espuma de asfalto. O segmento foi monitorado através do controle tecnológico de execução e de levantamentos deflectométricos com FWD. Verificou-se que as deflexões após quase 24 meses da execução do trecho reduziram consideravelmente. Paralelamente, foram realizados ensaios de resistência à tração por compressão diametral, módulo de resiliência triaxial e de deformação permanente para diferentes procedimentos de cura para verificação do efeito da saída da água nas mudanças de comportamento mecânico do material. Verificou-se ainda o efeito das tensões de confinamento no módulo de resiliência de materiais estabilizados com espuma de asfalto e determinaram-se os parâmetros de cisalhamento do material através de ensaiosTriaxiais Monotônicos. Pode-se concluir que a cura é uma consideração importante tanto com relação a sua duração, quanto com relação ao seu efeito no comportamento do material.

Layered silicate nanocomposites based on various high-functionality epoxy resins: The influence of an organoclay on resin cure

The influence of an organically modified clay on the curing behavior of three epoxy systems widely used in the aerospace industry and of different structures and functionalities, was studied. Diglycidyl ether of bisphenol A (DGEBA), triglycidyl p-amino phenol (TGAP) and tetraglycidyl diamino diphenylmethane (TGDDM) were mixed with an octadecyl ammonium ion modified organoclay and cured with diethyltoluene diamine (DETDA). The techniques of dynamic mechanical thermal analysis (DMTA), chemorheology and differential scanning calorimetry (DSC) were applied to investigate gelation and vitrification behavior, as well as catalytic effects of the clay on resin cure. While the formation of layered silicate nanocomposite based on the bifunctional DGEBA resin has been previously investigated to some extent, this paper represents the first detailed study of the cure behavior of different high performance, epoxy nanocomposite systems.

Distribution of melamine in polyester-melamine surface coatings cured under nonisothermal conditions

The influence of experimental cure parameters on the diffusion of reactive species in polyester-melamine thermoset coatings during curing has been investigated with X-ray photoelectron spectroscopy and attenuated total reflectance Fourier transform infrared. The diffusion of melamine plays a vital role in the curing process and, therefore, in the ultimate properties of coatings. At a low (

Lithium-aluminium casting alloys and their associated metal-mould reactions

Aluminium - lithium alloys are specialist alloys used exclusively by the aerospace industry. They have properties that are favourable to the production of modern military aircraft. The addition of approximately 2.5 percent lithium to aluminium increases the strength characteristics of the new alloys by 10 percent. The same addition has the added advantage of decreasing the density of the resulting alloy by a similar percentage. The disadvantages associated with this alloy are primarily price and castability. The addition of 2.5 weight percent lithium to aluminium results in a price increase of 100% explaining the aerospace exclusivity. The processability of the alloys is restricted to ingot casting and wrought treatment but for complex components precision casting is required. Casting the alloys into sand and investment moulds creates a metal - mould reaction, the consequences of which are intolerable in the production of military hardware. The primary object of this project was to investigate and characterise the reactions occurring between the newly poured metal and surface of the mould and to propose a method of counteracting the metal - mould reaction. The constituents of standard sand and investment moulds were pyrolised with lithium metal in order to simplify the complex in-mould reaction and the products were studied by the solid state techniques of powder X-Ray diffraction and magic angle spinning nuclear magnetic resonance spectroscopy. The results of this study showed that the order of reaction was: Organic reagents> > Silicate reagents> Non silicate reagents Alphaset and Betaset were the two organic binders used to prepare the sand moulds throughout this project. Studies were carried out to characterise these resins in order to determine the factors involved in their reaction with lithium. Analysis revealed that during the curing process the phenolic hydroxide groups are not reacted out and that a redox reaction takes place between these hydroxides and the lithium in the molten alloys. Casting experiments carried out to assess the protection afforded by various hydroxide protecting agents showed that modern effective, protecting chemicals such as bis-trimethyl silyl acetamide and hexamethyldisilazane did not inhibit the metal - mould reaction to a sufficiently high standard and that tri-methylchlorosilane was consistently the best performer. Tri-methyl chlorosilane has a simple functionalizing mechanism compared to other hydroxide protecting reagents and this factor is responsible for its superior inhibiting qualities. Comparative studies of 6Li and 7Li N.M.R. spectra (M.A.S. and `off angle') establish that, for solid state (and even solution) analytical purposes 6Li is the preferred nucleus. 6Li M.A.S.N.M.R. spectra were obtained for thermally treated laponite clay. At temperatures below 800oC both dehydrated and rehydrated samples were considered. The data are consistent with mobility of lithium ions from the trioctahedral clay sites at 600oC. The superior resolution achievable in 6Li M.A.S.N.M.R. is demonstrated in the analysis of a microwave prepared lithium exchanged clay where 6Li spectroscopy revelaed two lithium sites in comparison to 7Li M.A.S.N.M.R. which gave only a single lithium resonance.

The evolution of lactase persistence in Europe. A synthesis of archaeological and genetic evidence

Lactase persistence, the ability to digest the milk sugar lactose in adulthood, is highly associated with a T allele situated 13,910 bp upstream from the actual lactase gene in Europeans. The frequency of this allele rose rapidly in Europe after transition from hunter–gatherer to agriculturalist lifestyles and the introduction of milkable domestic species from Anatolia some 8000 years ago. Here we first introduce the archaeological and historic background of early farming life in Europe, then summarize what is known of the physiological and genetic mechanisms of lactase persistence. Finally, we compile the evidence for a co-evolutionary process between dairying culture and lactase persistence. We describe the different hypotheses on how this allele spread over Europe and the main evolutionary forces shaping this process. We also summarize three different computer simulation approaches, which offer a means of developing a coherent and integrated understanding of the process of spread of lactase persistence and dairying.

Design process excludes users : the co-creation activities between user and designer

User needs are a fundamental element of design. If the design process does not properly reflect user needs, the design will be severely compromised. Therefore, it is worthwhile to investigate how the user is, and user needs are, understood in the design process. In this article, three accepted linear process models for web site and interactive media design are reviewed in terms of the designer and user participation. The article then proposes a user-evolving collaborative design process which is built on co-creation activities between designer and user. Co-creation activities across the entire design process structurally and ontologically reposition the users, and user needs, centrally, which allows the designers to holistically approach to the user needs through building a partnership with the users. Co-creation creates an equal evolving participatory process between user and designer towards sharing values and knowledge and creating new domains of collective creativity.

Process-dependent magnetic properties of Co-doped ZnO in bulk and thin film form

Structural, optical and magnetic studies of Co-doped ZnO have been carried out for bulk as well as thin films. The magnetic studies revealed the superparamagnetic nature for low-temperature synthesized samples, indicating the presence of cobalt metallic clusters, and this is supported by the optical studies. For the high-temperature sintered samples one obtains paramagnetism. The optical studies reveal the presence of Co2+ ions in the tetrahedral sites indicating proper doping. Interestingly, the films deposited by laser ablation from the paramagnetic target showed room temperature ferromagnetism. It appears that the magnetic nature of this system is process dependent.

A process for community-based fisheries co-management

There are many similarities, and some differences, between community-based coastal resource management (CBCRM) and co-management. When CBCRM is considered an integral part of co-management, there is a new category of co-management which can be called community-based co-management. Community-based co-management is people-centered, community-oriented, resources-based and partnership-based. The implementation of community-based co-management has four components: resources management, community and economic development, capability building, and institutional support.

Obtenção de nanocompósitos a partir da co-coagulação da borracha nitrílica e hidrotalcita

Partículas nanoestruturadas têm sido amplamente utilizadas como carga de reforço em matrizes elastoméricas, sendo substitutos eficazes das cargas convencionais, já consagradas, como o negro de fumo, mica, sílica. Em especial, as argilas têm mostrado grande potencial ao que se refere a melhor dispersão na matriz polimérica, em função de sua elevada razão de aspecto. Dentro do vasto universo de argilominerais, as argilas aniônicas, também conhecidas hidróxido duplo lamelar (HDL), apresentam como vantagem a possibilidade de ser projetada estruturalmente para as mais diversas finalidades, ao se modificar os ânions ou os cátions, ou até mesmo combiná-los na estrutura lamelar. E dentre os métodos existentes para se preparar compósitos a base de elastômero/argila, a co-coagulação do látex, é uma forma bastante eficaz e economicamente viável, uma vez que a borracha obtida após processo de coagulação já contém a carga incorporada. Este trabalho se dedicou a avaliar o processo de co-coagulação do látex de NBR e HDL, visando a obtenção de nanocompósitos. Para tanto HDL de composição Mg/Al-CO3 foi modificado com ânions DS, DBS e ST e foram preparadas suspensões aquosas, utilizando como ferramentas de dispersão ultraturrax e ultrassom de ponteira. As variáveis de processo avaliadas foram tipo e teor de HDL, tempo de mistura látex/suspensão aquosa de HDL, quantidade de coagulante e velocidade de agitação. Por fim, os coágulos obtidos foram formulados para avaliar a influência dos HDL na cinética de vulcanização e também para determinação das propriedades mecânicas convencionais. Os resultados obtidos comprovaram que a metodologia de dispersão de hidrotalcita ao látex nitrílico de modo prévio ao processo de coagulação é uma alternativa viável para a obtenção de nanocompósitos. O uso do ultrassom de ponteira como ferramenta na dispersão aquosa de HDL contribuiu para maior estabilidade da suspensão e o ajuste nos parâmetros do sistema de coagulação, levaram a obtenção de grumos uniformes do ponto de vista macroscópico e microscópico. As micrografias dos coágulos não vulcanizados obtidas por MEV-FEG confirmaram as informações apuradas a partir dos difratogramas de raios-X que apontou a formação de um sistema parcialmente esfoliado, em função da ausência dos picos característicos da hidrotalcita, além de indicarem a coexistência de partículas em dimensões micrométrica a nanométricas em uma mesma estrutura. A composição química do HDL, com a presença de átomos de magnésio e alumínio combinados com grupos hidroxila favoreceu a redução tanto o tempo de indução como de pré-cura. As propriedades mecânicas que se mostraram mais sensíveis ao grau de dispersão da carga foram a dureza, a deformação permanente à compressão (DPC) e o módulo de tração a 300% de deformação (E300), em especial para os compósitos contendo 10% m/m de HDL natural e modificado com estearato. A resistência à chama dos nanocompósitos de NBR-HDL vulcanizados apresentou um ligeiro aumento quando comparados à NBR pura, visto que esta é uma característica própria da hidrotalcita, decorrente da sua composição química