Response to comment on “The response of vegetation on the Andean flank in western Amazonia to Pleistocene climate change” – M.L. Cárdenas et al., Science 331, 1055 (25 February 2011)”.

Puyasena et al. question our interpretation of climate-driven vegetation change on the Andean flank in western Amazonia during the middle Pleistocene and suggest that the use of Podocarpus spp. as a proxy of past climate change should be reassessed. We defend our assertion that vegetation change at the Erazo study site was predominantly driven by climate change due to concomitant changes recorded by multiple taxa in the fossil record.

The response of vegetation on the Andean flank in western Amazonia to Pleistocene climate change

A reconstruction of past environmental change from Ecuador reveals the response of lower montane forest on the Andean flank in western Amazonia to glacial-interglacial global climate change. Radiometric dating of volcanic ash indicates that deposition occurred ~324,000 to 193,000 years ago during parts of Marine Isotope Stages 9, 7, and 6. Fossil pollen and wood preserved within organic sediments suggest that the composition of the forest altered radically in response to glacial-interglacial climate change. The presence of Podocarpus macrofossils ~1000 meters below the lower limit of their modern distribution indicates a relative cooling of at least 5°C during glacials and persistence of wet conditions. Interglacial deposits contain thermophilic palms suggesting warm and wet climates. Hence, global temperature change can radically alter vegetation communities and biodiversity in this region.

Neuronal-glial populations form functional networks in a biocompatible 3D scaffold

Monolayers of neurons and glia have been employed for decades as tools for the study of cellular physiology and as the basis for a variety of standard toxicological assays. A variety of three dimensional (3D) culture techniques have been developed with the aim to produce cultures that recapitulate desirable features of intact. In this study, we investigated the effect of preparing primary mouse mixed neuron and glial cultures in the inert 3D scaffold, Alvetex. Using planar multielectrode arrays, we compared the spontaneous bioelectrical activity exhibited by neuroglial networks grown in the scaffold with that seen in the same cells prepared as conventional monolayer cultures. Two dimensional (monolayer; 2D) cultures exhibited a significantly higher spike firing rate than that seen in 3D cultures although no difference was seen in total signal power (<50 Hz) while pharmacological responsiveness of each culture type to antagonism of GABAAR, NMDAR and AMPAR was highly comparable. Interestingly, correlation of burst events, spike firing and total signal power (<50 Hz) revealed that local field potential events were associated with action potential driven bursts as was the case for 2D cultures. Moreover, glial morphology was more physiologically normal in 3D cultures. These results show that 3D culture in inert scaffolds represents a more physiologically normal preparation which has advantages for physiological, pharmacological, toxicological and drug development studies, particularly given the extensive use of such preparations in high throughput and high content systems.

Genomic evidence for the Pleistocene and recent population history of Native Americans

How and when the Americas were populated remains contentious. Using ancient and modern genome-wide data, we found that the ancestors of all present-day Native Americans, including Athabascans and Amerindians, entered the Americas as a single migration wave from Siberia no earlier than 23 thousand years ago (ka) and after no more than an 8000-year isolation period in Beringia. After their arrival to the Americas, ancestral Native Americans diversified into two basal genetic branches around 13 ka, one that is now dispersed across North and South America and the other restricted to North America. Subsequent gene flow resulted in some Native Americans sharing ancestry with present-day East Asians (including Siberians) and, more distantly, Australo-Melanesians. Putative “Paleoamerican” relict populations, including the historical Mexican Pericúes and South American Fuego-Patagonians, are not directly related to modern Australo-Melanesians as suggested by the Paleoamerican Model.

Transcriptome analysis of Taenia solium cysticerci using Open Reading Frame ESTs (ORESTES)

Background: Human infection by the pork tapeworm Taenia solium affects more than 50 million people worldwide, particularly in underdeveloped and developing countries. Cysticercosis which arises from larval encystation can be life threatening and difficult to treat. Here, we investigate for the first time the transcriptome of the clinically relevant cysticerci larval form. Results: Using Expressed Sequence Tags (ESTs) produced by the ORESTES method, a total of 1,520 high quality ESTs were generated from 20 ORESTES cDNA mini-libraries and its analysis revealed fragments of genes with promising applications including 51 ESTs matching antigens previously described in other species, as well as 113 sequences representing proteins with potential extracellular localization, with obvious applications for immune-diagnosis or vaccine development. Conclusion: The set of sequences described here will contribute to deciphering the expression profile of this important parasite and will be informative for the genome assembly and annotation, as well as for studies of intra- and inter-specific sequence variability. Genes of interest for developing new diagnostic and therapeutic tools are described and discussed.

Compliance to law and effectiveness of the rule of law in Brazil

The goal of this paper is to debate the degree of effectiveness of the rule of law in Brazil, through a survey measuring perceptions, attitudes and habits of Brazilians in regard to compliance to law. The survey conducted in Brazil is based on the study conducted by Tom R. Tyler in the United States, entitled Why People Obey the Law? (New Haven, CT: Yale University Press, 1990). The main argument of Tyler´s study is that people obey the law when they believe it’s legitimate, and not because they fear punishment. We test the same argument in Brazil, relying on five indicators: (i) behavior, which depicts the frequency with which respondents declared to have engaged in conducts in disobedience to the law; (ii) instrumentality, measuring perception of losses associated with the violation of the law, specially fear of punishment; (iii) morality, measuring perception of how much is right or wrong to engage in certain conducts in violation of the law; (iv) social control, which measures perception of social disapproval of certain types of behavior in violation of the law, and (v) legitimacy, which measures the perception of respect to the law and to some authorities. Results indicate that fear of sanctions is not the strongest drive in compliance to law, but more than legitimacy, indicators of morality and social control are the strongest in explaining why people obey the law in Brazil.

Externalismo social: mente, pensamento e linguagem

Meu objetivo é mostrar que as teses externalistas os significados não estão na cabeça e os pensamentos não estão na cabeça não implicam, necessariamente, a tese mais radical a mente não está na cabeça. Trato dessa questão no âmbito do Externalismo Social de Tyler Burge e Lynne Baker, argumentando que a importância que esses pensadores atribuem à linguagem nas questões relativas à mente não significa, como uma leitura apressada poderia sugerir, a redução da mente à linguagem e, muito menos, a eliminação da mente. A minha conclusão é que o externalismo social linguístico não se constitui como uma estratégia eficaz de enfrentamento dos problemas da natureza da mente e de sua relação com o corpo.

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set of 14,345 orthologs shared among seven mammalian species of which 1217 are absent or undetected in noneutherian (marsupial or monotreme) genomes. Cattle-specific evolutionary breakpoint regions in chromosomes have a higher density of segmental duplications, enrichment of repetitive elements, and species-specific variations in genes associated with lactation and immune responsiveness. Genes involved in metabolism are generally highly conserved, although five metabolic genes are deleted or extensively diverged from their human orthologs. The cattle genome sequence thus provides a resource for understanding mammalian evolution and accelerating livestock genetic improvement for milk and meat production.

Oral cleft prevention program (OCPP)

Background: Oral clefts are one of the most common birth defects with significant medical, psychosocial, and economic ramifications. Oral clefts have a complex etiology with genetic and environmental risk factors. There are suggestive results for decreased risks of cleft occurrence and recurrence with folic acid supplements taken at preconception and during pregnancy with a stronger evidence for higher than lower doses in preventing recurrence. Yet previous studies have suffered from considerable design limitations particularly non-randomization into treatment. There is also well-documented effectiveness for folic acid in preventing neural tube defect occurrence at 0.4 mg and recurrence with 4 mg. Given the substantial burden of clefting on the individual and the family and the supportive data for the effectiveness of folic acid supplementation as well as its low cost, a randomized clinical trial of the effectiveness of high versus low dose folic acid for prevention of cleft recurrence is warranted.Methods/design: This study will assess the effect of 4 mg and 0.4 mg doses of folic acid, taken on a daily basis during preconception and up to 3 months of pregnancy by women who are at risk of having a child with nonsyndromic cleft lip with/without palate (NSCL/P), on the recurrence of NSCL/P. The total sample will include about 6,000 women (that either have NSCL/P or that have at least one child with NSCL/P) randomly assigned to the 4 mg and the 0.4 mg folic acid study groups. The study will also compare the recurrence rates of NSCL/P in the total sample of subjects, as well as the two study groups (4mg, 0.4 mg) to that of a historical control group. The study has been approved by IRBs (ethics committees) of all involved sites. Results will be disseminated through publications and presentations at scientific meetings.Discussion: The costs related to oral clefts are high, including long term psychological and socio-economic effects. This study provides an opportunity for huge savings in not only money but the overall quality of life. This may help establish more specific clinical guidelines for oral cleft prevention so that the intervention can be better tailored for at-risk women.

The Submandibular Musculature of Phyllomedusinae (Anura: Hylidae): A Reappraisal

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

The STATFLUX code: a statistical method for calculation of flow and set of parameters, based on the Multiple-Compartment Biokinetical Model

The code STATFLUX, implementing a new and simple statistical procedure for the calculation of transfer coefficients in radionuclide transport to animals and plants, is proposed. The method is based on the general multiple-compartment model, which uses a system of linear equations involving geometrical volume considerations. Flow parameters were estimated by employing two different least-squares procedures: Derivative and Gauss-Marquardt methods, with the available experimental data of radionuclide concentrations as the input functions of time. The solution of the inverse problem, which relates a given set of flow parameter with the time evolution of concentration functions, is achieved via a Monte Carlo Simulation procedure.Program summaryTitle of program: STATFLUXCatalogue identifier: ADYS_v1_0Program summary URL: http://cpc.cs.qub.ac.uk/summaries/ADYS_v1_0Program obtainable from: CPC Program Library, Queen's University of Belfast, N. IrelandLicensing provisions: noneComputer for which the program is designed and others on which it has been tested: Micro-computer with Intel Pentium III, 3.0 GHzInstallation: Laboratory of Linear Accelerator, Department of Experimental Physics, University of São Paulo, BrazilOperating system: Windows 2000 and Windows XPProgramming language used: Fortran-77 as implemented in Microsoft Fortran 4.0. NOTE: Microsoft Fortran includes non-standard features which are used in this program. Standard Fortran compilers such as, g77, f77, ifort and NAG95, are not able to compile the code and therefore it has not been possible for the CPC Program Library to test the program.Memory, required to execute with typical data: 8 Mbytes of RAM memory and 100 MB of Hard disk memoryNo. of bits in a word: 16No. of lines in distributed program, including test data, etc.: 6912No. of bytes in distributed Program, including test data, etc.: 229 541Distribution format: tar.gzNature of the physical problem: the investigation of transport mechanisms for radioactive substances, through environmental pathways, is very important for radiological protection of populations. One such pathway, associated with the food chain, is the grass-animal-man sequence. The distribution of trace elements in humans and laboratory animals has been intensively studied over the past 60 years [R.C. Pendlenton, C.W. Mays, R.D. Lloyd, A.L. Brooks, Differential accumulation of iodine-131 from local fallout in people and milk, Health Phys. 9 (1963) 1253-1262]. In addition, investigations on the incidence of cancer in humans, and a possible causal relationship to radioactive fallout, have been undertaken [E.S. Weiss, M.L. Rallison, W.T. London, W.T. Carlyle Thompson, Thyroid nodularity in southwestern Utah school children exposed to fallout radiation, Amer. J. Public Health 61 (1971) 241-249; M.L. Rallison, B.M. Dobyns, F.R. Keating, J.E. Rall, F.H. Tyler, Thyroid diseases in children, Amer. J. Med. 56 (1974) 457-463; J.L. Lyon, M.R. Klauber, J.W. Gardner, K.S. Udall, Childhood leukemia associated with fallout from nuclear testing, N. Engl. J. Med. 300 (1979) 397-402]. From the pathways of entry of radionuclides in the human (or animal) body, ingestion is the most important because it is closely related to life-long alimentary (or dietary) habits. Those radionuclides which are able to enter the living cells by either metabolic or other processes give rise to localized doses which can be very high. The evaluation of these internally localized doses is of paramount importance for the assessment of radiobiological risks and radiological protection. The time behavior of trace concentration in organs is the principal input for prediction of internal doses after acute or chronic exposure. The General Multiple-Compartment Model (GMCM) is the powerful and more accepted method for biokinetical studies, which allows the calculation of concentration of trace elements in organs as a function of time, when the flow parameters of the model are known. However, few biokinetics data exist in the literature, and the determination of flow and transfer parameters by statistical fitting for each system is an open problem.Restriction on the complexity of the problem: This version of the code works with the constant volume approximation, which is valid for many situations where the biological half-live of a trace is lower than the volume rise time. Another restriction is related to the central flux model. The model considered in the code assumes that exist one central compartment (e.g., blood), that connect the flow with all compartments, and the flow between other compartments is not included.Typical running time: Depends on the choice for calculations. Using the Derivative Method the time is very short (a few minutes) for any number of compartments considered. When the Gauss-Marquardt iterative method is used the calculation time can be approximately 5-6 hours when similar to 15 compartments are considered. (C) 2006 Elsevier B.V. All rights reserved.

Recycling of silicon carbide and corn starch as binder originating from commercial starch consolidation

The main goal of this work is to demonstrate that the use of recycled material originated from SiC ceramics is viable. These ceramics were produced by commercial starch consolidation process. Before calcination stage, surplus of these materials always appears. This surplus is rich in SiC and starch. Samples were made by material previously milled in automatic mortar and sieved (100 Tyler). Later, 10% of distilled water was added to the material and the mixture was pressed at 40 MPa. In order to characterize the ceramic, three point flexural test were made, according to the ASTM C1161/94 norm. The results were analyzed by Weibull statistical method. Apparent density and porosity measures also were made, according to ASTM C20/87 norm. A verification of the surface was made in the fracture area by the depth from focus method and SEM image analysis. The results showed that the recycling process is fully viable, being a good economic option and reduce possible pollutant effect to the environment.

Estudo da influência da granulometria no comportamento reológico de polpa de bauxita e no fator de atrito

O presente trabalho apresenta estudos de caracterização reológica e determinações de fatores de atrito em três polpas de bauxita, originárias da Mina de Miltônia, Paragominas – Pará, resultantes de condições operacionais com graus diferentes de moagem. Deste modo, a diferenciação básica entre as mesmas reside na distribuição granulométrica. O objetivo é fazer uma proposta de revisão da especificação granulométrica do produto (polpa de bauxita para o mineroduto), permitindo uma comparação com as polpas do projeto (planta piloto) e da operação atual (usina de beneficiamento) quanto a resposta a alterações, principalmente, da viscosidade e fatores de atrito. A polpa proposta incorpora um percentual maior de finos (< 10 microns) em relação as demais polpas. Os benefícios possibilitarão ganhos de recuperação com a incorporação desta parcela de finos, a qual atualmente é descartada para a bacia de rejeitos. O material foi caracterizado por análises granulométricas da série Tyler, físicas e físico-químicas, microscopia eletrônica de varredura (MEV) e espectrometria de raios-x dispersiva em energia (EDS). Utilizando-se de um viscosímetro de cilindros coaxiais, tipo Searle, abordo use os aspectos reológicos destas polpas, em função da sua distribuição granulométrica e da variação da concentração de sólidos. As propriedades reológicas avaliadas foram a viscosidade, a tensão de escoamento e também os comportamentos que mostram a dependência da viscosidade com o tempo de aplicação de uma taxa de cisalhamento constante, verificando-se por meio de curva de histerese, a existência ou não da tixotropia e da reopexia. Os resultados experimentais mostraram que para as polpas ensaiadas, a granulometria e a concentração de sólidos são parâmetros relevantes na determinação da viscosidade. Os testes com estas três polpas de bauxita, de granulometrias diferentes, foram realizados a concentrações pré-determinadas, de modo a determinar o modelo reológico cujos parâmetros apresentaram os melhores coeficientes de correlação (R²), sendo que os melhores ajustes encontrados foram segundo o modelo de Herschel-Bulkley. Os fatores de atrito foram obtidos por formulações que envolvem uma relação logarítmica, utilizando-se da Lei da Parede como método de obtenção das expressões aplicáveis a estes fluidos não- Newtonianos viscoplásticos, sendo comparados com os calculados pelas correlações de Dodge e Metzner e verificou-se que de uma maneira geral há a concordância entre o modelo estudado nas três polpas. A análise dos fatores de atrito na concentração de 50% de sólidos, concentração de bombeio por mineroduto, mostra que o comportamento das polpas estudadas é semelhante, com os melhores ajustes para a faixa de 10.000 a 100.000 Reynolds (faixa média de trabalho para o escoamento turbulento de polpas de minério, homogêneas e heterogêneas).

Influência da granulometria e de aditivos no comportamento reológico do rejeito de lavagem da bauxita

Na mineração da bauxita no município de Paragominas-PA, são descartados no processo de beneficiamento rejeitos com teor de sólido de 33,5 % e granulometria muito fina com D₅₀ abaixo de 5 μm. Esses fatores contribuem para que esta suspensão formada basicamente por silico aluminatos, com elevada concentração de argila caulinita, apresente alta viscosidade e alta tensão inicial de escoamento. Foi realizada análise granulométrica e determinadas as composições químicas e mineralógicas do material. A análise granulométrica foi feita por peneiramento a úmido e as frações finas foram determinadas pela técnica da difração a laser. A determinação da composição química foi feita por Espectrometria de Fluorescência de Raios-X, obtendo-se considerável teor de alumina aproveitável, 21, 28%. A composição mineralógica foi determinada por Difração de Raios-X (DRX), obtendo-se gibsita, hematita, quartzo e caulinita. Realizou-se a determinação dos fatores de atrito da polpa, utilizando equação para fluidos que seguem o modelo de Herschel-Bulkley e utilizando as correlações de Dodge e Metzner. Utilizou-se o viscosímetro VT550, com sensor tipo cilindros coaxiais SV1, para realizar testes de defloculação e floculação utilizando diferentes aditivos reológicos. Os aditivos utilizados foram: hexametafosfato de sódio, hidroxamato, sulfato de alumínio, poliacrilato de sódio e poliacrilamida 25% aniônica. A programação foi taxa de cisalhamento de 100 s^-1, tempo de 20s e temperatura de 32ºC. Os defloculantes podem ser utilizados para melhorar o processo de bombeamento e os floculantes podem ser utilizados como auxiliadores no processo de sedimentação nos espessadores, auxiliando no processo de separação sólido-líquido. Foram realizadas ainda, análises de viscosidade em polpas com diferentes pH e em amostras passante a 400# Tyler, com o objetivo de avaliar se a granulometria e o pH influenciavam no comportamento dos aditivos. Pelo estudo observou-se que a granulometria e o pH influenciam no comportamento dos aditivos, pois quanto menor a granulometria mais eficiente é a atuação do aditivo e o seu comportamento como floculante ou defloculante está condicionado ao ajuste do pH.