In Situ and Simultaneous UV-vis/SAXS and UV-vis/XAFS Time-Resolved Monitoring of ZnO Quantum Dots Formation and Growth

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

A new implementation of Population Based Incremental Learning method for optimization studies in electromagnetics

To enhance the global search ability of Population Based Incremental Learning (PBIL) methods, It Is proposed that multiple probability vectors are to be Included on available PBIL algorithms. As a result, the strategy for updating those probability vectors and the negative learning and mutation operators are redefined as reported. Numerical examples are reported to demonstrate the pros and cons of the newly Implemented algorithm. ©2006 IEEE.

Thermoelectric effects in quantum dots

We report a numerical renormalization-group study of the thermoelectric effect in the single-electron transistor (SET) and side-coupled geometries. As expected, the computed thermal conductance and thermopower curves show signatures of the Kondo effect and of Fano interference. The thermopower curves are also affected by particle-hole asymmetry. © 2009 Elsevier B.V. All rights reserved.

Algunos aspectos de salud mental en relación al fenómeno de urbanización = Psychological and mental health problems of urbanization based on case studies in Peru

Los documentos del Seminario fueron publicados por UNESCO en 1961 con el título: La urbanización en América Latina/Urbanization in Latin America

The mineralizing fluid in the Piaba gold deposit, São Luís cratonic fragment (NW-Maranhão, Brazil) based on fluid inclusion studies in quartz veins

O depósito aurífero de Piaba tornou-se a primeira mina em operação no fragmento cratônico São Luís, noroeste do Maranhão. Seu ambiente geológico compreende rochas metavulcanossedimentares do Grupo Aurizona e granitoides da Suíte Tromaí, entre outras unidades menores, formadas em ambiente de arcos de ilhas entre 2240 e 2150 Ma, juntamente com outras unidades menores. A mineralização é caracterizada por uma trama stockwork de veios e vênulas de quartzo com seus halos de alteração (clorita + muscovita + carbonato + pirita + calcopirita e ouro) hospedada em um granodiorito granofírico fino (Granófiro Piaba) e em rocha subvulcânica andesítica do Grupo Aurizona. O corpo mineralizado é espacialmente limitado à zona de cisalhamento ENE-WSW rúptil-dúctil (Falha Piaba). Estudos petrográficos, microtermométricos e por espectroscopia microRaman no quartzo definiram inclusões aquo-carbônicas bifásicas e trifásicas, produzidas por aprisionamento heterogêneo durante separação de fases, e fluidos aquosos tardios. A solução mineralizadora corresponde a um fluido aquo-carbônico composto por CO₂ (5 - 24 mol%, densidade de 0,96 - 0,99 g/cm³), H₂O (74 - 93 mol%), N₂ (< 1 mol%), CH₄ (<1mol%) e 5,5 % em peso NaCl equivalente. O minério depositou a 267 - 302ºC e 1,25 - 2,08 kbar, correspondendo a profundidades de 4 a 7 km, em consonância com o regime estrutural. A composição e o intervalo de P-T do fluido mineralizador, combinados com o caráter redutor (log ƒ_O2 -31,3 a -34,3) e a sulfetação da rocha hospedeira, sugerem que o ouro foi transportado como um complexo sulfetado. O minério foi depositado em consequência da separação de fase, redução da atividade de enxofre e da ƒO₂ pela interação fluido-rocha.

Temperature-dependent Raman study of thermal parameters in CdS quantum dots

We report on the strong temperature-dependent thermal expansion, alpha(D), in CdS quantum dots (QDs) embedded in a glass template. We have performed a systematic study by using the temperature-dependent first-order Raman spectra, in CdS bulk and in dot samples, in order to assess the size dependence of alpha(D), and where the role of the compressive strain provoked by the glass host matrix on the dot response is discussed. We report the Gruneisen mode parameters and the anharmonic coupling constants for small CdS dots with mean radius R similar to 2.0 nm. We found that gamma parameters change, with respect to the bulk CdS, in a range between 20 and 50%, while the anharmonicity contribution from two-phonon decay channel becomes the most important process to the temperature-shift properties.

Signatures of quantum phase transitions in parallel quantum dots: Crossover from local moment to underscreened spin-1 Kondo physics

We study a strongly interacting "quantum dot 1" and a weakly interacting "dot 2" connected in parallel to metallic leads. Gate voltages can drive the system between Kondo-quenched and non-Kondo free-moment phases separated by Kosterlitz-Thouless quantum phase transitions. Away from the immediate vicinity of the quantum phase transitions, the physical properties retain signatures of first-order transitions found previously to arise when dot 2 is strictly noninteracting. As interactions in dot 2 become stronger relative to the dot-lead coupling, the free moment in the non-Kondo phase evolves smoothly from an isolated spin-one-half in dot 1 to a many-body doublet arising from the incomplete Kondo compensation by the leads of a combined dot spin-one. These limits, which feature very different spin correlations between dot and lead electrons, can be distinguished by weak-bias conductance measurements performed at finite temperatures.

Different approaches for dealing with rare variants in family-based genetic studies: application of a Genetic Analysis Workshop 17 problem

Rare variants are becoming the new candidates in the search for genetic variants that predispose individuals to a phenotype of interest. Their low prevalence in a population requires the development of dedicated detection and analytical methods. A family-based approach could greatly enhance their detection and interpretation because rare variants are nearly family specific. In this report, we test several distinct approaches for analyzing the information provided by rare and common variants and how they can be effectively used to pinpoint putative candidate genes for follow-up studies. The analyses were performed on the mini-exome data set provided by Genetic Analysis Workshop 17. Eight approaches were tested, four using the trait’s heritability estimates and four using QTDT models. These methods had their sensitivity, specificity, and positive and negative predictive values compared in light of the simulation parameters. Our results highlight important limitations of current methods to deal with rare and common variants, all methods presented a reduced specificity and, consequently, prone to false positive associations. Methods analyzing common variants information showed an enhanced sensibility when compared to rare variants methods. Furthermore, our limited knowledge of the use of biological databases for gene annotations, possibly for use as covariates in regression models, imposes a barrier to further research.

Pflanzlicher Lichtsammler (LHCII) in Hybridkomplexen mit organischen Farbstoffen und anorganischen Halbleiter-Nanokristallen (Quantum dots)

Der Lichtsammelkomplex II (LHCII) höherer Pflanzen ist eines der häufigsten Membranproteine der Welt. Er bindet 14 Chlorophylle und 4 Carotinoide nicht kovalent und fungiert in vivo als Lichtantenne des Photosystems II. Eine optimale Absorption von Licht ist auch bei Solarzellen entscheidend und es liegt nahe hier dasselbe Prinzip zu verwenden. Dafür bietet sich der Einsatz biologischer Komponenten wie des LHCII an. Dieser wurde evolutionär für eine effektive Absorption und Weiterleitung von Sonnenenergie optimiert. Zusätzlich lässt er sich in vitro in rekombinanter Form rekonstituieren. Für eine eventuelle Nutzung des LHCII in technologischen Anwendungen bedarf es der Interaktion mit anderen, vorzugsweise synthetischen Komponenten. Daher wurde die Bindung und der Energietransfer zwischen dem LHCII und organischen Fluoreszenzfarbstoffen sowie anorganischen „Quantum dots“ (QDs) untersucht. rnMit Donorfarbstoffen wurde die Grünlücke des LHCII funktionell geschlossen. Dafür wurden bis zu vier Fluoreszenzfarbstoffe kovalent an den LHCII gebunden. Diese Interaktion erfolgte sowohl mit Maleimiden an Cysteinen als auch mit N-Hydroxysuccinimidylestern an Lysinen. Die Assemblierung, Struktur und Funktion des Pigment-Protein-Komplexes wurde durch die Fluoreszenzfarbstoffe nicht gestört.rnAuf der Suche nach einem Farbstoff, der als Akzeptor die vom LHCII aufgenommene Energie übernimmt und durch Elektronenabgabe in elektrische Energie umwandelt, wurden drei Rylenfarbstoffe, ein Quaterrylen und zwei Terrylene, untersucht. Der LHCII konnte mit allen Farbstoffen erfolgreich markiert werden. Für die Nutzung der Hybridkomplexe ergaben sich allerdings Probleme. Das Quaterrylen beeinträchtigte aufgrund seiner Hydrophobizität die Rekonstitution des Proteins, während bei beiden Terrylenen der Energietransfer ineffizient war.rn Zusätzlich zu den Standard-Verknüpfungen zwischen Farbstoffen und Proteinen wurde in dieser Arbeit die „native chemische Ligation“ etabliert. Hierfür wurde eine LHCII-Mutante mit N-terminalem Cystein hergestellt, markiert und rekonstituiert. Messdaten an diesem Hybridkomplex ließen auf einen Energietransfer zwischen Farbstoff und Protein schließen. rnIn Hybridkomplexen sollen langfristig zur Ladungstrennung fähige Typ II-QDs Anwendung finden, wobei der LHCII als Lichtantenne dienen soll. Bis diese QDs verwendet werden können, wurden grundlegende Fragen der Interaktion beider Materialen an Typ I-QDs mit Energietransfer zum LHCII untersucht. Dabei zeigte sich, dass QDs in wässriger Lösung schnell aggregieren und entsprechende Kontrollen wichtig sind. Weiterführend konnte anhand der Trennung von ungebundenem und QD-gebundenem LHCII die Bindung von LHCII an QDs bestätigt werden. Dabei wurden Unterschiede in der Bindungseffizienz in Abhängigkeit der verwendeten LHCII und QDs festgestellt. Durch Herstellung von Fusionsproteinen aus LHCII und Affinitätspeptiden konnte die Bindung optimiert werden. Ein Energietransfer von QDs zu LHCII war nicht sicher nachzuweisen, da in den Hybridkomplexen zwar die QD- (Donor-) Fluoreszenz gelöscht, aber die LHCII- (Akzeptor-) Fluoreszenz nicht entsprechend stimuliert wurde.rnZusammenfassend wurden in dieser Arbeit einige Hybridkomplexe hergestellt, die in weiterführenden Ansätzen Verwendung finden können. Auf die hier gewonnenen Erkenntnisse über Interaktionen zwischen LHCII und synthetischen Materialien kann jetzt weiter aufgebaut werden.

Biologischer Lichtsammler (LHCII) für Halbleiternanokristalle (Quantum Dots)

Der light harvesting complex II (LHCII) ist ein pflanzliches Membranprotein, das in seiner trimeren Form über 40 Chlorophylle bindet. In der Pflanze kann er besonders effizient Licht sammeln und die Anregungsenergie anschließend fast verlustfrei über andere chlorophyll-bindende Proteine an die Reaktionszentren weiterleiten. Aufgrund dieser besonderen Eigenschaften war es ein Ziel dieser Arbeit, rekombinanten LHCII mit synthetischen Komponenten zu kombinieren, die zur Ladungstrennung befähigt sind. Zu diesem Zweck wurden unter anderem Halbleiternanokristalle (Quantum Dots, QDs) ausgewählt, die je nach Zusammensetzung sowohl als Energieakzeptoren als auch als Energiedonoren in Frage kamen. Durch Optimierung des Puffers gelang es, die Fluoreszenzquantenausbeute der QDs in wässriger Lösung zu erhöhen und zu stabilisieren, so dass die Grundvoraussetzungen für die spektroskopische Untersuchung verschiedener LHCII-QD-Hybridkomplexe erfüllt waren.rnUnter Verwendung bereits etablierter Affinitätssequenzen zur Bindung des LHCII an die QDs konnte gezeigt werden, dass die in dieser Arbeit verwendeten Typ-I QDs aus CdSe und ZnS sich kaum als Energie-Donoren für den LHCII eignen. Ein Hauptgrund lag im vergleichsweise kleinen Försterradius R0 von 4,1 nm. Im Gegensatz dazu wurde ein R0 von 6,4 nm für den LHCII als Donor und Typ-II QDs aus CdTe, CdSe und ZnS als Akzeptor errechnet, wodurch in diesem System eine höhere Effizienz des Energietransfers zu erwarten war. Fluoreszenzspektroskopische Untersuchungen von Hybridkomplexen aus LHCII und Typ-II QDs ergaben eine hohe Plausibilität für einen Fluoreszenz Resonanz Energietransfer (FRET) vom Lichtsammler auf die QDs. Weitere QD-Affinitätssequenzen für den LHCII wurden identifiziert und deren Bindekonstanten ermittelt. Versuche mit dem Elektronenakzeptor Methylviologen lieferten gute Hinweise auf eine LHCII-sensibilisierte Ladungstrennung der Typ-II QDs, auch wenn dies noch anhand alternativer Messmethoden wie z.B. durch transiente Absorptionsspektroskopie bestätigt werden muss. rnEin weiteres Ziel war die Verwendung von LHCII als Lichtsammler in dye-sensitized solar cells (DSSC). Geeignete dotierte TiO2-Platten wurden ermittelt, das Verfahren zur Belegung der Platten optimiert und daher mit wenig Aufwand eine hohe LHCII-Belegungsdichte erzielt. Erste Messungen von Aktionsspektren mit LHCII und einem zur Ladungstrennung fähigen Rylenfarbstoff zeigen eine, wenn auch geringe, LHCII sensibilisierte Ladungstrennung. rnDie Verwendung von Lanthanide-Binding-Tags (LBTs) ist ein potentielles Verfahren zur in vivo-Markierung von Proteinen mit Lanthanoiden wie Europium und Terbium. Diese Metalle besitzen eine überdurchschnittlich lange Lumineszenzlebensdauer, so dass sie leicht von anderen fluoreszierenden Molekülen unterschieden werden können. Im Rahmen der vorliegenden Arbeit gelang es, eine LBT in rekombinanten LHCII einzubauen und einen Lumineszenz Resonanz Energietransfer (LRET) vom Europium auf den LHCII nachzuweisen.rn

Studio della struttura locale di droganti in quantum dots mediante spettroscopia di assorbimento di raggi X

La capacità della spettroscopia di assorbimento di riuscire a determinare la struttura locale di campioni di ogni tipo e concentrazione, dagli elementi puri ai più moderni materiali nanostrutturati, rende lo studio dei meccanismi di incorporazione di droganti in matrici di semiconduttori il campo che meglio ne esprime tutto il potenziale. Inoltre la possibilità di ottenere informazioni sulla struttura locale di un particolare elemento in traccia posto in sistemi senza ordine a lungo raggio risulta, ovviamente, nello studio dei semiconduttori di grandissimo interesse. Tuttavia, la complessità di determinate strutture, generate dalla incorporazione di elementi eterovalenti che ne modificano la simmetria, può far si che all’analisi sperimentale si debbano affiancare dei metodi avanzati ab-initio. Questi approcci garantiscono, attraverso la simulazione o di strutture atomiche o dello stesso spettro XAS, di ottenere una più completa e precisa interpretazione dei dati sperimentali. Nella fase preliminare di questo elaborato si illustrerà la fenomenologia della spettroscopia di assorbimento e i fondamenti teorici che stanno alla base dell’analisi della struttura fine di soglia. Si introdurranno contemporaneamente le tecniche sperimentali con cui si realizzano le misure di spettri di assorbimento su una beamline che sfrutta sorgente di radiazione di sincrotrone facendo riferimento agli strumenti montati sulla linea LISA (o BM08) presso l’European Synchrotron Radiation Facility di Grenoble su cui si sono realizzati gli esperimenti di questo lavoro. Successivamente si realizzerà una rassegna di alcuni esperimenti simbolo della analisi della struttura locale di droganti in semiconduttori mediante XAFS, andando ad approfondire i metodi sperimentali associati. Nella parte principale della tesi verranno descritti alcuni tipi di analisi avanzate effettuate su Colloidal Quantum Dots a base di solfuro di piombo drogati con antimonio. Tali sistemi, particolarmente interessanti per potenziali applicazioni in campo optoelettrico, sono stati analizzati mediante misure di fluorescenza ottenute sulla beamline LISA. La fase di analisi ha visto la progettazione di una suite di programmi in C++ per realizzare simulazioni di uno spettro XAS teorico completo basato su strutture ottenute (anche esse) da metodi ab-initio.

A unifying approach for haplotype analysis of quantitative traits in family-based association studies: Testing and estimating gene-environment interactions with complex exposure variables

We propose robust and e±cient tests and estimators for gene-environment/gene-drug interactions in family-based association studies. The methodology is designed for studies in which haplotypes, quantitative pheno- types and complex exposure/treatment variables are analyzed. Using causal inference methodology, we derive family-based association tests and estimators for the genetic main effects and the interactions. The tests and estimators are robust against population admixture and strati¯cation without requiring adjustment for confounding variables. We illustrate the practical relevance of our approach by an application to a COPD study. The data analysis suggests a gene-environment interaction between a SNP in the Serpine gene and smok- ing status/pack years of smoking that reduces the FEV1 volume by about 0.02 liter per pack year of smoking. Simulation studies show that the pro- posed methodology is su±ciently powered for realistic sample sizes and that it provides valid tests and effect size estimators in the presence of admixture and stratification.

The Role of Cell Sterilization in Population Based Studies of Radiogenic Second Cancers Following Radiation Therapy

Advances in radiotherapy have generated increased interest in comparative studies of treatment techniques and their effectiveness. In this respect, pediatric patients are of specific interest because of their sensitivity to radiation induced second cancers. However, due to the rarity of childhood cancers and the long latency of second cancers, large sample sizes are unavailable for the epidemiological study of contemporary radiotherapy treatments. Additionally, when specific treatments are considered, such as proton therapy, sample sizes are further reduced due to the rareness of such treatments. We propose a method to improve statistical power in micro clinical trials. Specifically, we use a more biologically relevant quantity, cancer equivalent dose (DCE), to estimate risk instead of mean absorbed dose (DMA). Our objective was to demonstrate that when DCE is used fewer subjects are needed for clinical trials. Thus, we compared the impact of DCE vs. DMA on sample size in a virtual clinical trial that estimated risk for second cancer (SC) in the thyroid following craniospinal irradiation (CSI) of pediatric patients using protons vs. photons. Dose reconstruction, risk models, and statistical analysis were used to evaluate SC risk from therapeutic and stray radiation from CSI for 18 patients. Absorbed dose was calculated in two ways: with (1) traditional DMA and (2) with DCE. DCE and DMA values were used to estimate relative risk of SC incidence (RRCE and RRMA, respectively) after proton vs. photon CSI. Ratios of RR for proton vs. photon CSI (RRRCE and RRRMA) were then used in comparative estimations of sample size to determine the minimal number of patients needed to maintain 80% statistical power when using DCE vs. DMA. For all patients, we found that protons substantially reduced the risk of developing a second thyroid cancer when compared to photon therapy. Mean RRR values were 0.052±0.014 and 0.087±0.021 for RRRMA and RRRCE, respectively. However, we did not find that use of DCE reduced the number of patents needed for acceptable statistical power (i.e, 80%). In fact, when considerations were made for RRR values that met equipoise requirements and the need for descriptive statistics, the minimum number of patients needed for a micro-clinical trial increased from 17 using DMA to 37 using DCE. Subsequent analyses revealed that for our sample, the most influential factor in determining variations in sample size was the experimental standard deviation of estimates for RRR across the patient sample. Additionally, because the relative uncertainty in dose from proton CSI was so much larger (on the order of 2000 times larger) than the other uncertainty terms, it dominated the uncertainty in RRR. Thus, we found that use of corrections for cell sterilization, in the form of DCE, may be an important and underappreciated consideration in the design of clinical trials and radio-epidemiological studies. In addition, the accurate application of cell sterilization to thyroid dose was sensitive to variations in absorbed dose, especially for proton CSI, which may stem from errors in patient positioning, range calculation, and other aspects of treatment planning and delivery.

Optimization of InGaAsN(Sb)/GaAs quantum dots for optical emission at 1.55 µm with low optical degradation

Low optical degradation in GaInAsN(Sb)/GaAs quantum dots (QDs) p–i–n structures emitting up to 1.55 μm is presented in this paper. We obtain emission at different energies by means of varying N content from 1 to 4%. The samples show a low photoluminescence (PL) intensity degradation of only 1 order of magnitude when they are compared with pure InGaAs QD structures, even for an emission wavelength as large as 1.55 μm. The optimization studies of these structures for emission at 1.55 μm are reported in this work. High surface density and homogeneity in the QD layers are achieved for 50% In content by rapid decrease in the growth temperature after the formation of the nanostructures. Besides, the effect of N and Sb incorporation in the redshift and PL intensity of the samples is studied by post-growth rapid thermal annealing treatments. As a general conclusion, we observe that the addition of Sb to QD with low N mole fraction is more efficient to reach 1.55 μm and high PL intensity than using high N incorporation in the QD. Also, the growth temperature is determined to be an important parameter to obtain good emission characteristics. Finally, we report room temperature PL emission of InGaAsN(Sb)/GaAs at 1.4 μm.

Room temperature absorption in laterally biased Quantum Infrared Detectors fabricated by MBE regrowth

In this paper, we show room temperature operation of a quantum well infrared photodetector (QWIP) using lateral conduction through ohmic contacts deposited at both sides of two n-doped quantum wells. To reduce the dark current due to direct conduction in the wells, we apply an electric field between the quantum wells and two pinch-off Schottky gates, in a fashion similar to a field effect device. Since the normal incidence absorption is strongly reduced in intersubband transitions in quantum wells, we first analyze the response of a detector based on quantum dots (QD). This QD device shows photocurrent signal up to 150 K when it is processed in conventional vertical detector. However, it is possible to observe room temperature signal when it is processed in a lateral structure. Finally, the room temperature photoresponse of the QWIP is demonstrated, and compared with theory. An excellent agreement between the estimated and measured characteristics of the device is found