Phylogenetic and structural studies of a novel equine papillomavirus identified from aural plaques

Papillomaviruses (PVs) infect a wide range of animal species and show great genetic diversity. To date, excluding equine sarcoids, only three species of PVs were identified associated with lesions in horses: Equus caballus papillomavirus 1 (EcPV1-cutaneous), EcPV2 (genital) and EcPV3 (aural plaques). In this study, we identified a novel equine PV from aural plaques, which we designated EcPV4. Cutaneous samples from horses with lesions that were microscopically diagnosed as aural plaques were subjected to DNA extraction, amplification and sequencing. Rolling circle amplification and inverse PCR with specific primers confirmed the presence of an approximately 8. kb circular genome. The full-length EcPV4 L1 major capsid protein sequence has 1488 nucleotides (495 amino acids). EcPV4 had a sequence identity of only 53.3%, 60.2% and 51.7% when compared with the published sequences for EcPV1, EcPV2 and EcPV3, respectively. A Bayesian phylogenetic analysis indicated that EcPV4 clusters with EcPV2, but not with EcPV1 and EcPV3. Using the current PV classification system that is based on the nucleotide sequence of L1, we could not define the genus of the newly identified virus. Therefore, a structural analysis of the L1 protein was carried out to aid in this classification because EcPV4 cause lesion similar to the lesion caused by EcPV3. A comparison of the superficial loops demonstrated a distinct amino acid conservation pattern between EcPV4/EcPV2 and EcPV4/EcPV3. These results demonstrate the presence of a new equine PV species and that structural studies could be useful in the classification of PVs. © 2012 Elsevier B.V.

Use of PCR to estimate the prevalence of Equus caballus papillomavirus in aural plaques in horses

Aural plaques occur on the skin of the medial surface of the pinnae of horses. In this study the presence of Equus caballus papillomavirus (EcPV)-3 and -4 DNA was assessed in 45 such plaques using a 'touchdown' PCR. Papillomaviruses (PVs) were detected in 62.3% (28/45) of samples: EcPV-3 and -4 DNA in 8.89% (4/45) and 37.78% (17/45) of samples, respectively, with 15.56% (7/45) of samples exhibiting co-infection. Viral DNA was not detected in 37.78% (17/45) of samples, suggesting the possible existence of other equine PVs. Neither EcPV-3 nor -4 were detected in negative control skin. This study is the first to evaluate the prevalence of these two viruses in equine aural plaques. © 2013 Elsevier Ltd.

História tectônica e exumação das serras da Bocaina e Mantiqueira SP/RJ

Pós-graduação em Geologia Regional - IGCE

Exumação tectônica e evolução associada do relevo no arco de Ponta Grossa, sul-sudeste do Brasil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Evolução tectônica dos altos estruturais de Pitanga, Artemis, Pau D'Alho e Jibóia - Centro do Estado de São Paulo

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Aspectos texturais do magmatismo e tramas da tectônica impostas ao Granito Chaval na Zona de Cisalhamento Santa Rosa, extremo Noroeste da Província Borborema

A região Noroeste da Província Borborema apresenta uma diversidade de corpos graníticos de natureza e evolução tectônica diversificadas, do Paleoproterozoico ao Paleozoico, com maior incidência relacionada ao Neoproterozoico e alojamento em diferentes fases da orogenia Brasiliana. Um desses exemplos é o Granito Chaval, que representa um batólito aflorante próximo à costa Atlântica do Ceará e Piauí, intrusivo em ortognaisses do Complexo Granja e supracrustais do Grupo Martinópole. Ele é, em parte, coberto por depósitos cenozoicos costeiros e rochas sedimentares paleozoicas da Bacia do Parnaíba. O Granito Chaval tem como característica marcante a textura porfirítica, destacando-se megacristais de microclina, em sienogranitos e monzogranitos, e outras feições texturais/estruturais de origem magmática, Essas permitiram interpretar sua evolução como de alojamento relativamente raso do plúton, conduzido por processos de cristalização fracionada, mistura de magmas com fluxo magmático e ação gravitacional em função da diferença de densidade do magma, levando à flutuação e ascensão de megacristais de microclina no magma residual, com alojamento de leucogranitos e pegmatitos nos estágios finais da evolução deste plutonismo. Por outro lado, em toda a metade Leste do plúton, encontra-se um rico acervo de estruturas tectógenas de cisalhamento, relacionada à implantação da Zona de Cisalhamento Transcorrente Santa Rosa, que levou a transformações tectonometamórficas superpostas às feições magmáticas, as quais atingiram condições metamórficas máximas na fácies anfibolito baixo. Cartograficamente, foram individualizados três domínios estruturais em que estão presentes uma gama de variações petroestruturais do Granito Chaval, sejam feições texturais/estruturais ígneas e tectônicas. As rochas plutônicas foram deformadas e modificadas progressivamente à medida que se dirige para Leste, no qual as rochas mudam-se para tonalidades mais escuras do cinza e os processos de cominuição e recristalização dinâmica reduzem, progressivamente, a granulação grossa desses granitos bem como o tamanho dos fenocristais para dimensões mais finas, mantendo-se suas características porfiroides. Desse modo, a trama milonítica se torna evidente, acentuando-se ao atingir a porção principal da Zona de Cisalhamento Transcorrente Santa Rosa. Como principais feições estruturais, destacam-se extinção ondulante forte; encurvamento e segmentação de cristais; geminação de deformação; rotação de cristais; microbudinagem; foliação anastomosada, inclusive S-C; lineação de estiramento; formas amendoadas de porfiroclastos, fitas e folhas de quartzo e recristalização. Os produtos desses processos de cisalhamento resultam na formação de protomilonitos, milonitos e ultramilonitos. Essas faixas miloníticas representam os locais de maior concentração da deformação, por isso é possível acompanhar progressivamente suas modificações texturais e mineralógicas, configurando uma sequência clássica de deformação progressiva heterogênea, por cisalhamento simples, em condições frágil-dúctil e dúctil. O alojamento do Granito Chaval aconteceu no final do Criogeniano (aproximadamente 630 Ma) e pode ser interpretado como magmatismo sin a tardi-tectônico em relação ao evento Brasiliano. O processo de cisalhamento que gerou a Zona de Cisalhamento Transcorrente Santa Rosa se formou nos incrementos finais da deformação de uma colisão continental em um sistema de cavalgamento oblíquo, em que se edificou o Cinturão de Cisalhamento Noroeste do Ceará, devido ao extravasamento lateral de massas crustais em fluxo dúctil acontecido no final da orogenia Brasiliana no Noroeste da Província Borborema.

Reconhecimento da tectônica mezozóica-cenozóica na borda leste da Bacia do Paraná através da aplicação de traços de fissão em apatitas no Domo de Pitanga (Sudoeste de Rio Claro, SP)

A tectônica Mesozóica-Cenozóica na borda leste da Bacia do Paraná foi interpretada com base no estudo geocronológico de uma importante feição estrutural conhecida como Domo de Pitanga (sudoeste de Rio Claro, SP), que, como outras estruturas do mesmo tipo presentes na borda da bacia, coincide com grandes alinhamentos estruturais formados pela reativação de estruturas preexistentes no seu embasamento. O método utilizado foi o de datação por análise de traços de fissão em apatitas, o qual permite a modelagem térmica entre 120oC e a temperatura ambiente. Utilizando apatitas de rochas sedimentares, foi possível a modelagem da história térmica da área, graças à homogeneidade dos dados que cada amostra apresentou em função do aquecimento no Eocretáceo pelo magmatismo Serra Geral. Além do resfriamento posterior ao magmatismo marcado pelas idades (Eocretáceo), foram detectadas as principais épocas de resfriamento na área de estudo, sendo elas do Neocretáceo, Paleoceno e, com menor importância, do Mioceno. Estes períodos remontam a importantes eventos tectônicos ocorridos no Sudeste brasileiro, bem descritos no embasamento cristalino. Fica clara a influência desta tectônica de caráter ascensional do embasamento adjacente no interior da bacia, atuando na formação de estruturas, como é o caso do Domo de Pitanga.

Infiltrated plaques resulting from an injury caused by the common octopus (Octopus vulgaris): a case report

Several species of octopus are considered venomous due to toxins present in the glands connected to their "beak", which may be associated with hunt and kill of prey. Herein, we report an accident involving a common octopus (Octopus vulgaris) that injured an instructor during a practical biology lesson and provoked an inflamed infiltrated plaque on the hand of the victim. The lesion was present for about three weeks and was treated with cold compresses and anti-inflammatory drugs. It was healed ten days after leaving a hyperchromic macule at the bite site. The probable cause of the severe inflammation was the digestive enzymes of the glands and not the neurotoxins of the venom.

Papel da tectônica rúptil na possível migração de hidrocarbonetos: estudo da porção noroeste da estrutura de Pitanga, região central do estado de São Paulo

This work presents structural studies in the northwestern portion of the Pitanga Structural High, between the towns of Ipeúna and Charqueada. The area is composed by the sedimentary rocks from Paraná Basin, represented basically by Paleozoic rocks (Itararé Group, Tatuí, Irati and Corumbataí formations) and Mesozoics rocks (Pirambóia and Botucatu formations), in association with lower Cretaceous intrusive basic rocks expressed by dikes and sills. The most important structural features are distensive faults, which put together unleveled tectonic blocks and are frequently filled by diabase dikes. In this context, the main objective of this work is the study of local structures and the recognition of the tectonic association between dropped and uplifted blocks, jointly with the caracterization of a production, migration and storage model for hydrocarbons. Through the interpretation of aerial photos, field recognitions, structural and laboratorial analysis, a normal fault with direction of N30W and a slip of 20-25 meters located south of Ipeúna was recognized this fault puts the Tatuí and Irati Formations side by side. At this place and by the SP-191 route (north of Ipeúna city), sandstones from the top of Tatuí Formation are impregnated by asfaltic material. The data interpretation shows that local fault systems with NW directions have played a determinant part in the fault blocks arrangement, placing sandstone lenses from Tatuí Formation topographically above the oil shales from Irati Formation. In addition, these systems acted as migration paths to transport and storage hydrocarbon in sanstone lenses from Tatuí Formation

Evolução da tectônica rúptil no nordeste do Brasil baseada na termocronologia por traço de fissão em apatita

Results of apatite fission tracks from twelve samples collected across a Borborema Province transect, northeastern Brazil, revealed two major paleothermal events: a cooling event occurred between Albian and late Cenomanian (110 - 80 Ma) and a second cooling event starting on early Paleocene (66 Ma). Given the wide expression of the studied area (sampling trend along four brazilian states) a correlation between the distribution of fission track data and the current geological / geomorphological scenario was made possible, considering the area’s tectono - stratigraphic past and its thermochronologic evolution until now. The fact that the employed thermochronologic tool relates to a relatively shallow geothermometer, substancially information for understanding the behavior of basement brittle tectonic was achieved. These data were used to analyze faults origin and reactivation, associated with sedimentary basins evolution in the context of South America - Africa continental breakup.

Evolução tectônica do Trend Badejo-Linguado-Pampo, bacia de Campos (RJ)

The regional geological work for the oil industry, in order to find potential areas for hydrocarbon exploration and understand the geological parameters responsible for the formation of the deposit are known importance. This work fits into that scenario, with regional research with the aid of wells and 2D and 3D seismic sold by DBEP (Database Exploration and Production). Were also used as GeoGraphix software package Landmarks modules Prizm and SeisWork 2D and 3D, and the Surfer 8 and ArcGIS 9.2 with the infrastructure provided by the 05 PRH - ANP with LSGI (Laboratory of Seismic and Geological Interpretation) located at UNESP -- Campus de Rio Claro. The work focuses on study the trend of oil-Badejo-Linguado-Pampo, producing fields since the beginning of offshore holdings. The Campos Basin is now known as the offshore basin of the country more productive, and the high structural Badejo is a structure of great importance in the basin presents itself as largely responsible for the conditioning of hydrocarbon fields Pampo, Linguado and Badejo. Therefore this work also aims to increase knowledge of the region in terms of tectonic and stratigraphic characterize the geometry of the structures associated with this major regional structure. For this we used structural contour maps of the main chrono-horizons, and Isopach maps for the purpose of better understanding the tectono-sedimentary evolution of the Campos Basin locally.

Evolução tectônica e estratigráfica das bacias da margem continental do Uruguai

Pós-graduação em Geociências e Meio Ambiente - IGCE

Assessment of MMP-9, TIMP-1, and COX-2 in normal tissue and in advanced symptomatic and asymptomatic carotid plaques

Abstract Background Mature carotid plaques are complex structures, and their histological classification is challenging. The carotid plaques of asymptomatic and symptomatic patients could exhibit identical histological components. Objectives To investigate whether matrix metalloproteinase 9 (MMP-9), tissue inhibitor of MMP (TIMP), and cyclooxygenase-2 (COX-2) have different expression levels in advanced symptomatic carotid plaques, asymptomatic carotid plaques, and normal tissue. Methods Thirty patients admitted for carotid endarterectomy were selected. Each patient was assigned preoperatively to one of two groups: group I consisted of symptomatic patients (n = 16, 12 males, mean age 66.7 ± 6.8 years), and group II consisted of asymptomatic patients (n = 14, 8 males, mean age 67.6 ± 6.81 years). Nine normal carotid arteries were used as control. Tissue specimens were analyzed for fibromuscular, lipid and calcium contents. The expressions of MMP-9, TIMP-1 and COX-2 in each plaque were quantified. Results Fifty-eight percent of all carotid plaques were classified as Type VI according to the American Heart Association Committee on Vascular Lesions. The control carotid arteries all were classified as Type III. The median percentage of fibromuscular tissue was significantly greater in group II compared to group I (p < 0.05). The median percentage of lipid tissue had a tendency to be greater in group I than in group II (p = 0.057). The percentages of calcification were similar among the two groups. MMP-9 protein expression levels were significantly higher in group II and in the control group when compared with group I (p < 0.001). TIMP-1 expression levels were significantly higher in the control group and in group II when compared to group I, with statistical difference between control group and group I (p = 0.010). COX-2 expression levels did not differ among groups. There was no statistical correlation between MMP-9, COX-2, and TIMP-1 levels and fibrous tissue. Conclusions MMP-9 and TIMP-1 are present in all stages of atherosclerotic plaque progression, from normal tissue to advanced lesions. When sections of a plaque are analyzed without preselection, MMP-9 concentration is higher in normal tissues and asymptomatic surgical specimens than in symptomatic specimens, and TIMP-1 concentration is higher in normal tissue than in symptomatic specimens.

Charakterisierung atherosklerotischer Plaques am Beispiel der A. carotis mittels Histologie, CT und semiautomatischer Farbcodierung

Auf der Suche nach dem „vulnerablen Plaque“, der ein besonders hohes Risiko für Schlaganfall und Herzinfarkt besitzt, findet momentan ein Paradigmenwechsel statt. Anstelle des klassischen Stenosegrades gewinnt die Darstellung der Plaquemorphologie zunehmend an Bedeutung. Fragestellung: Ziel dieser Arbeit ist es, die Fähigkeiten eines modernen 16-Kanal-CT hinsichtlich der Auflösung des Plaqueinneren bei Atherosklerose der Karotiden zu untersuchen und den Halo-Effekt in vivo zu erforschen. Methoden: Für die Studie wurden von 28 Patienten mit bekannter, symptomatischer Karotisstenose vor der gefäßchirurgischen Intervention CT-Bilder angefertigt, die nachfolgend mit der Histologie der Gefäßpräparate korreliert wurden. Auf diese Weise konnten die mikroskopisch identifizierten Lipidkerne im CT-Bild eingezeichnet und hinsichtlich ihrer Fläche und Dichtewerte evaluiert werden. In einem weiteren Schritt führten 2 Radiologen in Unkenntnis der histologischen Ergebnisse unabhängig voneinander eine Befundung durch und markierten mutmaßliche Lipidkerne. Zudem wurden sowohl in der verblindeten als auch in der histologiekontrollierten Auswertung die Plaquetypen anhand der AHA-Klassifikation bestimmt. Ein dritter Befundungsdurchgang geschah unter Zuhilfenahme einer von uns entwickelten Software, die CT-Bilder farbkodiert um die Detektion der Lipidkerne zu verbessern. Anhand der Farbkodierung wurde zudem ein Indexwert errechnet, der eine objektive Zuordnung zur AHA-Klassifikation ermöglichen sollte. Von 6 Patienten wurde zusätzlich noch eine native CT-Aufnahme angefertigt, die durch MPR exakt an die Kontrastmittelserie angeglichen wurde. Auf diese Weise konnte der Halo-Effekt, der die Plaqueanteile im lumennahen Bereich überstrahlt, quantifiziert und charakterisiert werden. Ergebnisse: Während die Einstufung in die AHA-Klassifikation sowohl durch den Befunder als auch durch den Softwarealgorithmus eine hohe Korrelation mit der Histologie aufweist (Typ IV/Va: 89 %, Typ Vb: 70 %, Typ Vc: 89 %, Typ VI: 55 %), ist die Detektion der Lipidkerne in beiden Fällen nicht ausreichend gut und die Befunderabhängigkeit zu groß (Cohens Kappa: 18 %). Eine Objektivierung der AHA-Klassifikation der Plaques durch Indexberechnung nach Farbkodierung scheint möglich, wenn auch dem Befunder nicht überlegen. Die fibröse Kappe kann nicht abgegrenzt werden, da Überstrahlungseffekte des Kontrastmittels dessen HU-Werte verfälschen. Dieser Halo-Effekt zeigte sich im Median 1,1 mm breit mit einer Standardabweichung von 0,38 mm. Eine Abhängigkeit von der Kontrastmitteldichte im Gefäßlumen konnte dabei nicht nachgewiesen werden. Der Halo-Effekt fiel im Median um -106 HU/mm ab, bei einer Standardabweichung von 33 HU/mm. Schlussfolgerung: Die CT-Technologie zeigt sich, was die Darstellung von einzelnen Plaquekomponenten angeht, den bekannten Fähigkeiten der MRT noch unterlegen, insbesondere in Bezug auf die fibröse Kappe. Ihre Fähigkeiten liegen bisher eher in der Einstufung von Plaques in eine grobe Klassifikation, angelehnt an die der AHA. Die klinische Relevanz dessen jedoch gilt es in Zukunft in größeren Studien weiter zu untersuchen. Auch lässt die Weiterentwicklung der Computertomographie auf eine zukünftig höhere Auflösung der Plaquemorphologie hoffen.

Offline fusion of co-registered intravascular ultrasound and frequency domain optical coherence tomography images for the analysis of human atherosclerotic plaques

To demonstrate the feasibility and potential usefulness of an offline fusion of matched optical coherence tomography (OCT) and intravascular ultrasound (IVUS)/virtual histology (IVUS-VH) images.