Gas-phase fragmentation and conformation of the sugar-modified antisense oligonucleotide tcDNA

Tricyclo-DNA (tcDNA) is a sugar- and backbone-modified analogue of DNA that is currently tested as antisense oligonucleotide for the treatment of Duchenne muscular dystrophy. The name tricyclo-DNA is derived from the modified sugar-moiety: the deoxyribose is extended to a three-membered ring system. This modification is designed to limit the flexibility of the structure, thus giving rise to entropically stabilized hybrid duplexes formed between tcDNA and complementary DNA or RNA oligonucleotides. While the structural modifications increase the biostability of the therapeutic agent, they also render the oligonucleotide inaccessible to enzyme-based sequencing methods. Tandem mass spectrometry constitutes an alternative sequencing technique for partially and fully modified oligonucleotides. For reliable sequencing, the fragmentation mechanism of the structure in question must be understood. Therefore, the presented work evaluates the effect of the modified sugar-moiety on the gas-phase dissociation of single stranded tcDNA. Moreover, our experiments reflect the exceptional gas-phase stability of hybrid duplexes that is most noticeable in the formation of truncated duplex ions upon collision-induced dissociation. The stability of the duplex arises from the modified sugar-moiety, as the rigid structure of the tcDNA single strand minimizes the change of the entropy for the annealing. Moreover, the tc-modification gives rise to extended conformations of the nucleic acids in the gas-phase, which was studied by ion mobility spectrometry-mass spectrometry.

Ingeniería de la conservación: Investigación aplicada para la conservación de la fauna mediterránea amenazada

El ser humano nunca ha tenido una capacidad semejante a la actual para alterar el medio en el que vive. A través fundamentalmente de cambios en el uso del hábitat, alteración de los ciclos biogeoquímicos, cambio climático y presencia de especies invasoras, la tasa de extinción de especies se ha acelerado enormemente. Al crecer más rápido la población humana dentro de las áreas en las que se concentra una mayor biodiversidad (biodiversity hotspots), las tasas de transformación son mayores, por lo que dicha biodiversidad se encuentra más amenazada. Entre los principales 25 biodiversity hotspots globales se encuentra la cuenca mediterránea. Las afecciones a la biodiversidad hacen por tanto que en dicha cuenca mediterránea sea necesario poner en práctica iniciativas innovadoras para su conservación. Pero además de una cuidadosa selección, es necesario el seguimiento y la evaluación de la eficacia y la eficienca de dichas medidas, para comprobar su idoneidad y mejorarlas cuando sea posible. Esta es la tarea de la ingeniería de la conservación. Esta Memoria busca analizar y proponer mejoras en cuatro acciones experimentales de conservación de la biodiversidad que tienen un marco común, la conservación de especies subrogadas del monte mediterráneo. En concreto de cinco especies amenazadas: conejo de monte (Oryctolagus cuniculus, especie llave), águila imperial ibérica (Aquila adalberti), águila perdicera (Aquila fasciata), cigüeña negra (Ciconia nigra) y lince ibérico (Lynx pardinus), todas ellas especies paraguas y bandera. Casi todas estas especies se enfrentan a amenazas comunes, como son la pérdida de la calidad del hábitat, la mortalidad de origen humano, la escasez de alimento o la falta de eficiencia en las técnicas de seguimiento. Las acciones destinadas a revertir o minimizar estas amenazas han tenido un marco geográfico y ecológico común, 49 fincas privadas de monte mediterráneo situadas en 9 espacios de la Red Natura 2000 del centro-occidental peninsular, en las que se ha podido trabajar merced a acuerdos de custodia del territorio. Dichas actividades han sido financiadas casi por completo con cargo a fondos LIFE Naturaleza de la Comisión Europea. El presente documento contribuye a aportar el conocimiento científico imprescindible para mejorar la eficacia y eficiencia de las medidas técnicas de gestión y conservación: la ingeniería de la conservación. Como resultados más relevantes se pueden citar que la selección del conejo de las zonas sembradas aumenta con la presencia tanto de isletas de matorral como de refugios y resulta inferior en las zonas de matorral más cerrado; que la electrocución es una de las principales causas de mortalidad de las rapaces amenazadas, así como que se ha detectado que la mortalidad se concentra en determinadas zonas que deben ser prioritarias para su corrección y que éstas deben pasar por las modificaciones estructurales; que la selección de zonas de alimentación por parte de la cigüeña negra se ve afectada por numerosos factores y que una adecuada ubicación y gestión de las charcas para ganadería y caza mayor puede favorecer no sólo la alimentación de esta especie, sino suponer un lugar de cría para diversas especies de anfibios y peces autóctonos, en franco declive; finalmente, hay que destacar que la mejora en el seguimiento de las poblaciones de lince ibérico pasa por la incorporación de métodos de seguimiento novedosos, como las cámaras infrarrojas en letrinas, dada la capacidad de aprendizaje de la especie. Abstract Nowadays the human being has reached its top ability to exchange its environment. Mainly through habitat change, altering biogeochemical cycles, climatic change and alien species, global extinction rate has increased dramatically. Population increases faster in biodiversity hotspots, thus change rates are higher. Mediterranean basin is included within the 25 most valuable biodiversity hotspots. Affections on biodiversity turns necessary to develop innovative actions to maintain the most threatened species in this hotspot. But further than a careful selection and implementarion, survey and evaluation of those practices is necessary to check its suitability. Those are actions for the conservation engineering. This Memory looks for to analyze and to put forward improvements in four experimental biodiversity conservation actions with a common framework: conservation of surrogate Mediterranean species. Those actions were specifically directed to five threatened species: the European wild rabbit (Oryctolagus cuniculus, key species), Spanish imperial eagle (Aquila adalberti) and Bonelli’s eagle (Aquila fasciata, both of the umbrella and flagship species), black stork (Ciconia nigra, umbrella and flagship species) and the Iberian lynx (Lynx pardinus, umbrella and flagship species). Those species have common threats: habitat loss, maninduced mortality, food shortening and lack of surveying efficiency. Actions aimed to minimize those threats also had a common geographical frame: 49 privately owned states within 9 Natura 2000 areas in Southwestern Spain. Actions were developed through lands tewardship agreements, and were even wholly undertaken through European Commision LIFE’s fund. This document contributes to develop cientific knowledge necessary for increasing efficacy and efficiency for implementing technical measures devoted to conservation, the conservation engineering. One of the most outstanding result might be the necessity of including bushy islets or rabbit shelter within sowings when enhacing rabbit populations is the goal. Electrocution is one of the commonest man-induced death causes for raptors, especially for the threatened ones. Areas of concentration of this mortality have been detected, and when mitigation measures have been evaluated, only structural modifications had results. The black stork’s selection of feeding areas is influenced by several factors. An adequate location and management of livestock’s ponds can favour not only this species, but also creating new breeding places for amphibians and indigenous fish species, most of them in a sharp decline. Finally, improving the survey of the Iberian lynx might be achieved through implementing newly developed surveying systems, such as the infrared cameras in latrines.

Properties and applications of high electron density structures based on InN and related compounds

El objetivo principal del presente trabajo es estudiar y explotar estructuras que presentan un gas bidimensional de electrones (2DEG) basadas en compuestos nitruros con alto contenido de indio. Existen muchas preguntas abiertas, relacionadas con el nitruro de indio y sus aleaciones, algunas de las cuales se han abordado en este estudio. En particular, se han investigado temas relacionados con el análisis y la tecnología del material, tanto para el InN y heteroestructuras de InAl(Ga)N/GaN como para sus aplicaciones a dispositivos avanzados. Después de un análisis de la dependencia de las propiedades del InN con respecto a tratamientos de procesado de dispositivos (plasma y térmicos), el problema relacionado con la formación de un contacto rectificador es considerado. Concretamente, su dificultad es debida a la presencia de acumulación de electrones superficiales en la forma de un gas bidimensional de electrones, debido al pinning del nivel de Fermi. El uso de métodos electroquímicos, comparados con técnicas propias de la microelectrónica, ha ayudado para la realización de esta tarea. En particular, se ha conseguido lamodulación de la acumulación de electrones con éxito. En heteroestructuras como InAl(Ga)N/GaN, el gas bidimensional está presente en la intercara entre GaN y InAl(Ga)N, aunque no haya polarización externa (estructuras modo on). La tecnología relacionada con la fabricación de transistores de alta movilidad en modo off (E-mode) es investigada. Se utiliza un método de ataque húmedo mediante una solución de contenido alcalino, estudiando las modificaciones estructurales que sufre la barrera. En este sentido, la necesidad de un control preciso sobre el material atacado es fundamental para obtener una estructura recessed para aplicaciones a transistores, con densidad de defectos e inhomogeneidad mínimos. La dependencia de la velocidad de ataque de las propiedades de las muestras antes del tratamiento es observada y comentada. Se presentan también investigaciones relacionadas con las propiedades básicas del InN. Gracias al uso de una puerta a través de un electrolito, el desplazamiento de los picos obtenidos por espectroscopia Raman es correlacionado con una variación de la densidad de electrones superficiales. En lo que concierne la aplicación a dispositivos, debido al estado de la tecnología actual y a la calidad del material InN, todavía no apto para dispositivos, la tesis se enfoca a la aplicación de heteroestructuras de InAl(Ga)N/GaN. Gracias a las ventajas de una barrera muy fina, comparada con la tecnología de AlGaN/GaN, el uso de esta estructura es adecuado para aplicaciones que requieren una elevada sensibilidad, estando el canal 2DEG más cerca de la superficie. De hecho, la sensibilidad obtenida en sensores de pH es comparable al estado del arte en términos de variaciones de potencial superficial, y, debido al poco espesor de la barrera, la variación de la corriente con el pH puede ser medida sin necesidad de un electrodo de referencia externo. Además, estructuras fotoconductivas basadas en un gas bidimensional presentan alta ganancia debida al elevado campo eléctrico en la intercara, que induce una elevada fuerza de separación entre hueco y electrón generados por absorción de luz. El uso de metalizaciones de tipo Schottky (fotodiodos Schottky y metal-semiconductormetal) reduce la corriente de oscuridad, en comparación con los fotoconductores. Además, la barrera delgada aumenta la eficiencia de extracción de los portadores. En consecuencia, se obtiene ganancia en todos los dispositivos analizados basados en heteroestructuras de InAl(Ga)N/GaN. Aunque presentando fotoconductividad persistente (PPC), los dispositivos resultan más rápidos con respeto a los valores que se dan en la literatura acerca de PPC en sistemas fotoconductivos. ABSTRACT The main objective of the present work is to study and exploit the two-dimensionalelectron- gas (2DEG) structures based on In-related nitride compounds. Many open questions are analyzed. In particular, technology and material-related topics are the focus of interest regarding both InNmaterial and InAl(Ga)N/GaNheterostructures (HSs) as well as their application to advanced devices. After the analysis of the dependence of InN properties on processing treatments (plasma-based and thermal), the problemof electrical blocking behaviour is taken into consideration. In particular its difficulty is due to the presence of a surface electron accumulation (SEA) in the form of a 2DEG, due to Fermi level pinning. The use of electrochemical methods, compared to standard microelectronic techniques, helped in the successful realization of this task. In particular, reversible modulation of SEA is accomplished. In heterostructures such as InAl(Ga)N/GaN, the 2DEGis present at the interface between GaN and InAl(Ga)N even without an external bias (normally-on structures). The technology related to the fabrication of normally off (E-mode) high-electron-mobility transistors (HEMTs) is investigated in heterostructures. An alkali-based wet-etching method is analysed, standing out the structural modifications the barrier underwent. The need of a precise control of the etched material is crucial, in this sense, to obtain a recessed structure for HEMT application with the lowest defect density and inhomogeneity. The dependence of the etch rate on the as-grown properties is observed and commented. Fundamental investigation related to InNis presented, related to the physics of this degeneratematerial. With the help of electrolyte gating (EG), the shift in Raman peaks is correlated to a variation in surface eletron density. As far as the application to device is concerned, due to the actual state of the technology and material quality of InN, not suitable for working devices yet, the focus is directed to the applications of InAl(Ga)N/GaN HSs. Due to the advantages of a very thin barrier layer, compared to standard AlGaN/GaN technology, the use of this structure is suitable for high sensitivity applications being the 2DEG channel closer to the surface. In fact, pH sensitivity obtained is comparable to the state-of-the-art in terms of surface potential variations, and, due to the ultrathin barrier, the current variation with pH can be recorded with no need of the external reference electrode. Moreover, 2DEG photoconductive structures present a high photoconductive gain duemostly to the high electric field at the interface,and hence a high separation strength of photogenerated electron and hole. The use of Schottky metallizations (Schottky photodiode and metal-semiconductor-metal) reduce the dark current, compared to photoconduction, and the thin barrier helps to increase the extraction efficiency. Gain is obtained in all the device structures investigated. The devices, even if they present persistent photoconductivity (PPC), resulted faster than the standard PPC related decay values.

Comparación de un nuevo método de aceleración de análisis dinámicos con métodos de reducción de modelos

La dinámica estructural estudia la respuesta de una estructura ante cargas o fenómenos variables en el tiempo. En muchos casos, estos fenómenos requieren realizar análisis paramétricos de la estructura considerando una gran cantidad de configuraciones de diseño o modificaciones de la estructura. Estos cambios, ya sean en fases iniciales de diseño o en fases posteriores de rediseño, alteran las propiedades físicas de la estructura y por tanto del modelo empleado para su análisis, cuyo comportamiento dinámico se modifica en consecuencia. Un caso de estudio de este tipo de modificaciones es la supervisión de la integridad estructural, que trata de identificar la presencia de daño estructural y prever el comportamiento de la estructura tras ese daño, como puede ser la variación del comportamiento dinámico de la estructura debida a una delaminación, la aparición o crecimiento de grieta, la debida a la pérdida de pala sufrida por el motor de un avión en vuelo, o la respuesta dinámica de construcciones civiles como puentes o edificios frente a cargas sísmicas. Si a la complejidad de los análisis dinámicos requeridos en el caso de grandes estructuras se añade la variación de determinados parámetros en busca de una respuesta dinámica determinada o para simular la presencia de daños, resulta necesario la búsqueda de medios de simplificación o aceleración del conjunto de análisis que de otra forma parecen inabordables tanto desde el punto de vista del tiempo de computación, como de la capacidad requerida de almacenamiento y manejo de grandes volúmenes de archivos de datos. En la presente tesis doctoral se han revisado los métodos de reducción de elementos .nitos más habituales para análisis dinámicos de grandes estructuras. Se han comparado los resultados de casos de estudio de los métodos más aptos, para el tipo de estructuras y modificaciones descritas, con los resultados de aplicación de un método de reducción reciente. Entre los primeros están el método de condensación estática de Guyan extendido al caso con amortiguamiento no proporcional y posteriores implementaciones de condensaciones dinámicas en diferentes espacios vectoriales. El método de reducción recientemente presentado se denomina en esta tesis DACMAM (Dynamic Analysis in Complex Modal space Acceleration Method), y consiste en el análisis simplificado que proporciona una solución para la respuesta dinámica de una estructura, calculada en el espacio modal complejo y que admite modificaciones estructurales. El método DACMAM permite seleccionar un número reducido de grados de libertad significativos para la dinámica del fenómeno que se quiere estudiar como son los puntos de aplicación de la carga, localizaciones de los cambios estructurales o puntos donde se quiera conocer la respuesta, de forma que al implementar las modificaciones estructurales, se ejecutan los análisis necesarios sólo de dichos grados de libertad sin pérdida de precisión. El método permite considerar alteraciones de masa, rigidez, amortiguamiento y la adición de nuevos grados de libertad. Teniendo en cuenta la dimensión del conjunto de ecuaciones a resolver, la parametrización de los análisis no sólo resulta posible, sino que es también manejable y controlable gracias a la sencilla implementación del procedimiento para los códigos habituales de cálculo mediante elementos .nitos. En el presente trabajo se muestra la bondad y eficiencia del método en comparación con algunos de los métodos de reducción de grandes modelos estructurales, verificando las diferencias entre sí de los resultados obtenidos y respecto a la respuesta real de la estructura, y comprobando los medios empleados en ellos tanto en tiempo de ejecución como en tamaño de ficheros electrónicos. La influencia de los diversos factores que se tienen en cuenta permite identificar los límites y capacidades de aplicación del método y su exhaustiva comparación con los otros procedimientos. ABSTRACT Structural dynamics studies the response of a structure under loads or phenomena which vary over time. In many cases, these phenomena require the use of parametric analyses taking into consideration several design configurations or modifications of the structure. This is a typical need in an engineering o¢ ce, no matter the structural design is in early or final stages. These changes modify the physical properties of the structure, and therefore, the finite element model to analyse it. A case study, that exempli.es this circumstance, is the structural health monitoring to predict the variation of the dynamical behaviour after damage, such as a delaminated structure, a crack onset or growth, an aircraft that suffers a blade loss event or civil structures (buildings or bridges) under seismic loads. Not only large structures require complex analyses to appropriately acquire an accurate solution, but also the variation of certain parameters. There is a need to simplify the analytical process, in order to bring CPU time, data .les, management of solutions to a reasonable size. In the current doctoral thesis, the most common finite element reduction methods for large structures are reviewed. Results of case studies are compared between a recently proposed method, herein named DACMAM (Dynamic Analysis in Complex Modal space Acceleration Method), and different condensation methods, namely static or Guyan condensation and dynamic condensation in different vectorial spaces. All these methods are suitable for considering non-classical damping. The reduction method DACMAM consist of a structural modification in the complex modal domain which provides a dynamic response solution for the reduced models. This process allows the selection of a few degrees of freedom that are relevant for the dynamic response of the system. These d.o.f. are the load application points, relevant structural points or points in which it is important to know the response. Consequently, an analysis with structural modifications implies only the calculation of the dynamic response of the selected degrees of freedom added, but with no loss of information. Therefore, mass, stiffness or damping modifications are easily considered as well as new degrees of freedom. Taking into account the size of the equations to be solved, the parameterization of the dynamic solutions is not only possible, but also manageable and controllable due to the easy implementation of the procedure in the standard finite element solvers. In this thesis, the proposed reduction method for large structural models is compared with other published model order reduction methods. The comparison shows and underlines the efficiency of the new method, and veri.es the differences in the response when compared with the response of the full model. The CPU time, the data files and the scope of the parameterization are also addressed.

Developmental Regulation of Intercellular Protein Trafficking through Plasmodesmata in Tobacco Leaf Epidermis1

Plasmodesmata mediate direct cell-to-cell communication in plants. One of their significant features is that primary plasmodesmata formed at the time of cytokinesis often undergo structural modifications, by the de novo addition of cytoplasmic strands across cell walls, to become complex secondary plasmodesmata during plant development. Whether such modifications allow plasmodesmata to gain special transport functions has been an outstanding issue in plant biology. Here we present data showing that the cucumber mosaic virus 3a movement protein (MP):green fluorescent protein (GFP) fusion was not targeted to primary plasmodesmata in the epidermis of young or mature leaves in transgenic tobacco (Nicotiana tabacum) plants constitutively expressing the 3a:GFP fusion gene. Furthermore, the cucumber mosaic virus 3a MP:GFP fusion protein produced in planta by biolistic bombardment of the 3a:GFP fusion gene did not traffic between cells interconnected by primary plasmodesmata in the epidermis of a young leaf. In contrast, the 3a MP:GFP was targeted to complex secondary plasmodesmata and trafficked from cell to cell when a leaf reached a certain developmental stage. These data provide the first experimental evidence, to our knowledge, that primary and complex secondary plasmodesmata have different protein-trafficking functions and suggest that complex secondary plasmodesmata may be formed to traffic specific macromolecules that are important for certain stages of leaf development.

Induction of long-term potentiation is associated with major ultrastructural changes of activated synapses.

Long-term potentiation (LTP), an increase in synaptic efficacy believed to underlie learning and memory mechanisms, has been proposed to involve structural modifications of synapses. Precise identification of the morphological changes associated with LTP has however been hindered by the difficulty in distinguishing potentiated or activated from nonstimulated synapses. Here we used a cytochemical method that allowed detection in CA1 hippocampus at the electron microscopy level of a stimulation-specific, D-AP5-sensitive accumulation of calcium in postsynaptic spines and presynaptic terminals following application of high-frequency trains. Morphometric analyses carried out 30-40 min after LTP induction revealed dramatic ultrastructural differences between labeled and nonlabeled synapses. The majority of labeled synapses (60%) exhibited perforated postsynaptic densities, whereas this proportion was only 20% in nonlabeled synaptic contacts. Labeled synaptic profiles were also characterized by a larger apposition zone between pre- and postsynaptic structures, longer postsynaptic densities, and enlarged spine profiles. These results add strong support to the idea that ultrastructural modifications and specifically an increase in perforated synapses are associated with LTP induction in field CA1 of hippocampus and they suggest that a majority of activated contacts may exhibit such changes.

Efeito da cirurgia bariátrica sobre parâmetros clínicos, laboratoriais e fatores de risco cardiovascular

Introdução - Na prevenção primária das doenças cardiovasculares, a adoção de estilo de vida saudável representa uma das estratégias mais importantes. Entretanto, baixos índices de adesão e o abandono da dieta constituem obstáculo importante ao tratamento. Neste sentido, as intervenções cirúrgicas surgiram como um mecanismo promotor da restrição alimentar e têm ganhado importância não só pelo tratamento da obesidade como também no controle dos fatores de risco cardiovascular e na possível redução da mortalidade. Através de estudos clínicos foi possível observar que estas estratégias cirúrgicas promovem profundas modificações estruturais no trato gastrointestinal gerando aumento da saciedade e da sensibilidade à insulina. Em especial para os pacientes diabéticos, por si só associados a maior risco cardiovascular, as cirurgias bariátricas seriam capazes de promover um efeito muito intenso e agudo sobre os marcadores relacionados ao desenvolvimento da aterosclerose. Um evento muito definido no tempo como uma intervenção cirúrgica pode ser muito útil para o estudo e identificação de mecanismos que ainda não estão completamente estabelecidos no processo aterosclerótico. Objetivos - Analisar o comportamento das variáveis laboratoriais, clínicas e estruturais relacionadas ao desenvolvimento e progressão da aterosclerose em indivíduos diabéticos submetidos à cirurgia bariátrica. Métodos - Foram incluídos vinte voluntários diabéticos refratários ao tratamento clínico e que apresentavam obesidade abdominal. Deste grupo, metade foi aleatoriamente selecionada para realização da cirurgia bariátrica e metade foi mantida em tratamento clínico otimizado. Todos os participantes foram submetidos a exames clínicos e bioquímicos nas mesmas ocasiões, até trinta dias antes da cirurgia, três e vinte e quatro meses após a cirurgia. Nestas ocasiões além do perfil lipídico e da glicemia, determinamos os hormônios incretínicos, adipocinas. A avaliação da quantidade de gordura epicárdica e a presença de esteatose hepática será realizada somente após dois anos de seguimento em conjunto com as demais variáveis,. Foram incluídos também 10 indivíduos saudáveis e com IMC dentro da normalidade, como parte do grupo controle. Estes indivíduos foram submetidos à coleta de sangue em dois momentos para avaliação dos mesmos metabólitos. Resultados - No momento pré-intervenção os indivíduos do grupo cirúrgico e clinico eram diferentes em relação ao IMC, Glicemia e Triglicérides, sendo assim, os resultados obtidos foram ajustados minimizando o impacto destas diferenças. Após o seguimento de 3 meses, o grupo cirúrgico apresentou redução significativa nos valores de peso, IMC (33,4 ± 2,6 vs. 27,4±2,8 kg/m2, p < 0,001), HbA1c (9,26 ± 2,12 vs. 6,18±0,63%, p < 0,001), CT (182,9 ± 45,4 vs. 139,8 ± 13 mg/dl, p < 0,001), HDL (33,1 ± 7,7 vs. 38,4 ± 10,6 mg/dL, p < 0,001), TG (369,5 ± 324,6 vs. 130,8 ± 43,1 mg/dL, p < 0,001), Pro-insulina (12.72±9,11 vs. 1,76±1,14 pM, p < 0,001), RBP-4 (9,85±2,53 vs. 7,3±1,35 ng/ml, p < 0,001) e CCK (84,8±33,2 vs. 79,9 ± 31,1, ng/ml, p < 0,001), houve também aumento significativo nos níveis de HDL-colesterol (33,1 ± 7,7 vs. 38,4 ± 10,6 mg/dL, p < 0,001), Glucagon (7,4 ± 7,9 vs. 10,2±9,7 pg/ml, p < 0,001) e FGF- 19 (74,1 ± 45,8 vs. 237,3 ± 234 pg/ml, p=0,001). Um dado interessante foi que os valores de Pro-insulina, RBP-4, HbA1c e HDL- colesterol no grupo cirúrgico atingiram valores similares àqueles do grupo controle três meses após a intervenção, sendo que o FGF-19 apresentava valor duas vezes maior do que o encontrado no grupo de indivíduos saudáveis (237 ± 234 vs. 98 ± 102,1 pg/ml). O grupo clínico não apresentou variação nas variáveis clinicas, apenas nos valores de glucagon com redução significativa no período pós-intervenção (18,1 ± 20,7 vs. 16,8 ± 18,4 pg/ml, p < 0,001). Conclusão - Concluímos que indivíduos diabéticos descompensados e refratários ao tratamento clínico, quando submetidos à cirurgia bariátrica, apresentam uma alteração profunda do ponto de vista clínico, metabólico e hormonal, em relação ao indivíduos de mesmo perfil mantidos em tratamento clínico otimizado. Esta importante alteração, observada já com três meses após a intervenção, pode representar uma importante redução do risco cardiovascular nestes indivíduos. Individualmente, a notável modificação dos valores de FGF-19 associadas à intervenção devem ser estudadas com maior profundidade para compreensão de seu significado e sua potencial utilidade como marcador ou como um dos protagonistas no mecanismo de prevenção cardiovascular

Estudo comparativo de utilização de SER, MIG/MAG e Friction Surfacing na reparação de braços de suspensão de VBTP-M113

Nas últimas décadas Friction Surfacing despertou bastante interesse por permitir revestir metais no estado sólido desenvolvendo-se a temperaturas inferiores às de fusão, evitando assim as afetações que dai advém. No presente trabalho existem dois blocos principais, um primeiro onde se caraterizou o material do braço de suspensão do M113, e um segundo onde se produziram revestimentos recorrendo às três técnicas de revestimento em estudo (FS, Fios Fluxados e SER), com o objetivo de se proceder ao seu estudo e comparação. No processo de caraterização do aço do braço, foram realizados diversos ensaios, dos quais se salientam os ensaios de durezas Vickers e os ensaios de faiscamento, concluindo-se que o aço que mais se assemelha com o do braço é o AISI 4140. Para a caraterização dos revestimentos foram definidos diferentes tipos de ensaios, Metalúrgicos e Mecânicos, com a finalidade principal de abranger uma ampla gama de solicitações semelhantes às que são requeridas ao componente em serviço. Nos ensaios Metalúrgicos foram avaliadas as ligações, a existência de defeitos, as ZTA e as alterações metalográficas. A avaliação das propriedades mecânicas foi obtida através de ensaios de dureza, desgaste, flexão em três pontos e Push-Pull. Da realização destes ensaios verificou-se que os revestimentos obtidos por FS apresentam melhores propriedades, tanto Metalúrgicas como Mecânicas Por fim, foi elaborada uma avaliação dos custos operacionais envolvidos na realização da reparação de um braço de suspensão, concluindo-se que FS, apesar de apresentar os revestimentos com melhores propriedades, é ainda uma tecnologia pouco viável economicamente, fato que se deve á baixa eficiência apresentada.

Piecing together evolution of the vertebrate endocrine system

One of the great challenges in biology is to understand how particular complex morphological and physiological characters originated in specific evolutionary lineages. In this article, we address the origin of the vertebrate hypothalamic-pituitary-peripheral gland (H-P-PG) endocrine system, a complex network of specialized tissues, ligands and receptors. Analysis of metazoan nucleotide and protein sequences reveals a patchwork pattern of H-P-PG gene conservation between vertebrates and closely related invertebrates (ascidians). This is consistent with a model of how the vertebrate H-P-PG endocrine system could have emerged in relatively few steps by gene family expansion and by regulatory and structural modifications to genes that are present in a chordate ancestor. Some of these changes might have resulted in new connections between metabolic or signaling pathways, such as the bridging of 'synthesis islands' to form an efficient system for steroid hormone synthesis.

Anti-proliferative effects of novel Glyco-lipid-arsenicals (III) on MCF-7 human breast cancer cells

Arsenic trioxide appears to be effective in the treatment of pro-myelocytic leukaemia. The substituted phenylarsen(III)oxides are highly polar, they have a high tendency to undergo oxidation to As (V) and to form oligomers, to prevent this we protected the As-(OH)2 group as cyclic dithiaarsanes. To increase the compound's biological stability and passive diffusion we conjugated the compound of interest with lipoamino acids (Laas). Alternatively, we further conjugated the dithiaarsane derivative with a carbohydrate to utilize active transport systems and to target compound. We investigated two novel glyco-lipid arsenicals (III) (compounds 9 and 11) for their ability to initiate MCF-7 breast cancer cell death and characterized the mechanism by which death was initiated. A significant decrease in MCF-7 cell proliferation was observed using 1 μM and 10 μM compound (11) and 10 μM of compound (9). Treatment with compound (11) triggered apoptosis of MFC-7 cells while compound (9) induced inhibition of cellular proliferation was not via rapid induction of apoptosis and more likely reflected necrosis and/ or alterations in the cell cycle. Differences in the anti-proliferative potency of the two compounds indicate that structural modifications influence effectiveness. © 2006 Bentham Science Publishers Ltd.

In situ aberration corrected-transmission electron microscopy of magnesium oxide nanocatalysts for biodiesels

Biofuels are promising renewable energy sources and can be derived from vegetable oil feedstocks. Although solid catalysts show great promise in plant oil triglyceride transesterification to biodiesel, the identification of active sites and operating surface nanostructures created during their processing is essential for the development of efficient heterogeneous catalysts. Systematic, direct observations of dynamic MgO nanocatalysts from a magnesium hydroxide-methoxide precursor were performed under controlled calcination conditions using novel in situ aberration corrected-transmission electron microscopy at the 0.1 nm level and quantified with catalytic reactivity and physico-chemical studies. Surface structural modifications and the evolution of extended atomic scale glide defects implicate coplanar anion vacancies in active sites in the transesterification of triglycerides to biodiesel. The linear correlation between surface defect density (and therefore polarisability) and activity affords a simple means to fine tune new, energy efficient nanocatalysts for biofuel synthesis. © 2009 Springer Science+Business Media, LLC.

Tratamento superficial de argilas com cera de carnaúba e microemulsão de óleo de coco

Adsorption is a process that has become indispensable due to pollution caused by industrial activity. More economically viable adsorbents are being tested to replace the high cost of materials used. The clays can be used as adsorbents and are low cost materials, natural properties feasible for the application in the adsorption process, structural modifications are performed with ease promoting selective adsorption in these materials. The objective of this study was to synthesize and characterize adsorbents used in the adsorption of organic compounds. The adsorbents were characterized by the techniques of XRD, SEM, FTIR and TG. The results show that the studied materials have affinity to organic compounds and can be applied as adsorbents. The materials studied are viable and can be applied in the treatment of effluents contaminated in industrial scale.

Développement et caractérisation de dérivés dipyrrométhène pour des applications dans le domaine du photovoltaïque

Ce projet de recherche mené en collaboration industrielle avec St-Jean Photochimie Inc. / PCAS Canada vise le développement et la caractérisation de dérivés dipyrrométhène pour des applications dans le domaine du photovoltaïque. La quête du récoltage des photons se situant dans le proche-infrarouge a été au centre des modifications structurales explorées afin d’augmenter l’efficacité de conversion des cellules solaires de type organique et à pigments photosensibles. Trois familles de composés intégrant le motif dipyrrométhène ont été synthétisées et caractérisées du point de vue spectroscopique, électrochimique, structural ainsi que par modélisation moléculaire afin d’établir des relations structures-propriétés. La première famille comporte six azadipyrrométhènes au potentiel de coordination tétradentate sur des centres métalliques. Le développement d’une nouvelle voie synthétique asymétrique combinée à l’utilisation d’une voie symétrique classique ont permis d’obtenir l’ensemble des combinaisons de substituants possibles sur les aryles proximaux incluant les noyaux 2-hydroxyphényle, 2-méthoxyphényle et 2- pyridyle. La modulation du maximum d’absorption dans le rouge a pu être faite entre 598 et 619 nm. De même, la présence de groupements méthoxyle ou hydroxyle augmente l’absorption dans le violet (~410 nm) tel que démontré par modélisation. La caractérisation électrochimique a montré que les dérivés tétradentates étaient en général moins stables aux processus redox que leur contre-parti bidentate. La deuxième famille comporte dix dérivés BODIPY fusionnés de façon asymétrique en position [b]. L’aryle proximal a été modifié de façon systématique afin de mieux comprendre l’impact des substituents riches en électron et de la fusion de cycles aromatiques. De plus, ces dérivés ont été mis en relation avec une vaste série de composés analogues. Les résultats empiriques ont montré que les propriétés optoélectroniques de la plateforme sont régies par le degré de communication électronique entre l’aryle proximal, le pyrrole sur lequel il est attaché et le noyau indolique adjacent à ce dernier. Les maximums d’absorption dans le rouge sont modulables entre 547 et 628 nm et la fluorescence des composés se situe dans le proche- infrarouge. L’un des composé s’est révélé souhaitable pour une utilisation en photovoltaïque ainsi qu’à titre de sonde à pH. La troisième famille comporte cinq complexes neutres de RuII basés sur des polypyridines et portant un ligand azadipyrrométhène cyclométalé. Les composés ont montré une forte absorption de photons dans la région de 600 à 800 nm (rouge à proche- infrarouge) et qui a pu être étendue au-delà de 1100 nm dans le cas des dérivés portant un ligand terpyridine. L’analyse des propriétés optoélectroniques de façon empirique et théorique a montré un impact significatif de la cyclométalation et ouvert la voie pour leur étude en tant que photosensibilisateurs en OPV et en DSSC. La capacité d’un des complexes à photo-injecter un électron dans la bande de conduction du semi-conducteur TiO2 a été démontré en collaboration avec le groupe du Pr Gerald J. Meyer à University of North Carolina at Chapel Hill, premier pas vers une utilisation dans les cellules solaires à pigments photosensibles. La stabilité des complexes en solution s’est toutefois avérée problématique et des pistes de solutions sont suggérées basées sur les connaissances acquises dans le cadre de cette thèse.

Influence of LAR and VAR on Para-Aminopyridine Antimalarials Targetting Haematin in Chloroquine-Resistance

Antimalarial chloroquine (CQ) prevents haematin detoxication when CQ-base concentrates in the acidic digestive vacuole through protonation of its p-aminopyridine (pAP) basic aro- matic nitrogen and sidechain diethyl-N. CQ export through the variant vacuolar membrane export channel, PFCRT, causes CQ-resistance in Plasmodium falciparum but 3-methyl CQ (sontochin SC), des-ethyl amodiaquine (DAQ) and bis 4-aminoquinoline piperaquine (PQ) are still active. This is determined by changes in drug accumulation ratios in parasite lipid (LAR) and in vacuolar water (VAR). Higher LAR may facilitate drug binding to and blocking PFCRT and also aid haematin in lipid to bind drug. LAR for CQ is only 8.3; VAR is 143,482. More hydrophobic SC has LAR 143; VAR remains 68,523. Similarly DAQ with a phenol sub- stituent has LAR of 40.8, with VAR 89,366. In PQ, basicity of each pAP is reduced by distal piperazine N, allowing very high LAR of 973,492, retaining VAR of 104,378. In another bis quinoline, dichlorquinazine (DCQ), also active but clinically unsatisfactory, each pAP retains basicity, being insulated by a 2-carbon chain from a proximal nitrogen of the single linking piperazine. While LAR of 15,488 is still high, the lowest estimate of VAR approaches 4.9 million. DCQ may be expected to be very highly lysosomotropic and therefore potentially hepatotoxic. In 11 pAP antimalarials a quadratic relationship between logLAR and logRe- sistance Index (RI) was confirmed, while log (LAR/VAR) vs logRI for 12 was linear. Both might be used to predict the utility of structural modifications.

Interplay of Defects, Magnetism, Ripples and Strain in Graphene

We present a comprehensive study based on first-principles calculations about the interplay of four important ingredients on the electronic structure of graphene: defects + magnetism + ripples + strain. So far they have not been taken into account simultaneously in a set of ab initio calculations. Furthermore, we focus on the strain dependence of the properties of carbon monovacancies, with special attention to magnetic spin moments. We demonstrated that such defects show a very rich structural and spin phase-diagram with many spin solutions as function of strain. At zero strain the vacancy shows a spin moment of 1.5 Bohrs that increases up to 2 Bohrs with stretching. Changes are more dramatic under compression: the vacancy becomes non-magnetic under a compression larger than 2%. This transition is linked to the structural modifications associated with the formation of ripples in the graphene layer. Our results suggest that such interplay could have important implications for the design of future spintronics devices based on graphene derivatives, as for example a spin-strain switch based on vacancies.