Le vert et le rouge: a study on the materials, techniques and meaning of the green and red colours in medieval portuguese illuminations

Dissertação para obtenção do Grau de Doutor em Conservação e Restauro

Evaluation of the exploitation potential of red swamp crayfish (Procambarus clarkii) in Portugal

Dissertação para obtenção do Grau de Mestre em Engenharia do Ambiente, perfil de Ordenamento do Território e Impactes Ambientais

Follow the red road of triheme cytochromes in Geobacter sulfurreducens

The bacterium Geobacter sulfurreducens (Gs) is capable of oxidizing a large variety of compounds relaying electrons out of the cytoplasm and across the membrane in a process designated as extracellular electron transfer. The Gs genome was fully sequenced and a family composed by five periplasmic triheme cytochromes c7 (designated PpcA-E) was identified. These cytochromes play an important role in the reduction of extracellular acceptors. They contain approximately 70 amino acids, three heme groups with bis-histidinyl axial coordination, and share between 57 and 77% sequence identity. The triheme cytochrome PpcA is highly abundant in Gs and is most likely the reservoir of electrons destined for outer surface. In addition to its role in electron transfer pathways this protein can perform e-/H+ energy transduction, a process that is disrupted when the strictly conserved aromatic residue phenylalanine 15 is replaced by a leucine (PpcAF15L). This Thesis focuses on the expression, purification and characterization of these proteins using Nuclear Magnetic Resonance and ultraviolet-visible spectroscopy. The orientations of the heme axial histidine ring planes and the orientation of the heme magnetic axis were determined for each Gs triheme cytochrome. The comparison of the orientations obtained in solution with the crystal structures available showed significant differences. The results obtained provide the paramagnetic constraints to include in the future refinement of the solution structure in the oxidized state. In this work was also determined the solution structure and the pH-dependent conformational changes of the PpcAF15L allowing infer the structural origin for e-/H+ energy transduction mechanism as shown by PpcA. Finally, the backbone and side chain NH signals of PpcA were used to map interactions between this protein and the putative redox partner 9,10-anthraquinone-2,6-disulfonate (AQDS). In this work a molecular interaction was identified for the first time between PpcA and AQDS, constituting the first step toward the rationalization of the Gs respiratory chain.

Haemoglobin and red cell counts in leptospirosis patients infected with different serovars

IntroductionThe aim of the study was to compare haemoglobin and red cell counts between patients known to be infected with a range of leptospiral serovars.MethodsThe study retrospectively compared the haemoglobin and red cell count results from the first blood samples taken from 207 patients at presentation to a Queensland Health hospital.ResultsSignificant differences were observed in haemoglobin and red cell counts in those infected with Leptospira interrogans serovars Szwajizak and Canicola when compared with most of the other serovars.ConclusionsThese findings suggest that haemoglobin and red cell counts may be useful in differentiating leptospiral serovars in leptospirosis patients.

Light harvesting in solar cells using natural pigments from red fruits adsorbed to mesoporous TiO2

Nature has developed strategies to present us with a wide variety of colours, from the green of leaves to the bright colours seen in flowers. Anthocyanins are between these natural pigments that are responsible for the great diversity of colours seen in flowers and fruits. Anthocyanins have been used to sensitize titanium dioxide (TiO2) in Dye-Sensitized Solar Cells (DSSCs). DSSCs have become one of the most popular research topic in photovoltaic cells due to their low production costs when compared to other alternatives. DSSCs are inspired in what happens in nature during photosynthesis. A primary charge separation is achieved by means of a photoexcited dye capable of performing the electron injection into the conduction band of a wide band-gap semiconductor, usually TiO2. With this work we aimed to synthesize a novel mesoporous TiO2 structure as the semiconductor in order to increase the dye loading. We used natural occurring dyes such as anthocyanins and their synthetic flavylium relatives, as an alternative to the widely used metal complexes of Ru(II) which are expensive and are environmentally unsafe. This offers not only the chance to use safer dyes for DSSCs, but also to take profit of waste biological products, such as wine and olive oil production residues that are heavily loaded with anthocyanin dyes. We also performed a photodegradation study using TiO2 as the catalyst to degrade dye contaminants, such as those from the wine production waste, by photo-irradiation of the system in the visible region of the light spectrum. We were able to succeed in the synthesis of mesoporous TiO2 both powder and thin film, with a high capacity to load a large amount of dye. We proved the concept of photodegradation using TiO2 as catalyst. And finally, we show that wine production waste is a possible dye source to DSSCs application.

Systematics, functional morphology and distribution of a bivalve (Apachecorbula muriatica gen. et sp. nov.) from the rim of the ‘Valdivia Deep’ brine pool in the Red Sea

The deep brine pools of the Red Sea comprise extreme, inhospitable habitats yet house microbial communities that potentially may fuel adjacent fauna. We here describe a novel bivalve from a deep-sea (1525 m) brine pool in the Red Sea, where conditions of high salinity, lowered pH, partial anoxia and high temperatures are prevalent. Remotely operated vehicle (ROV) footage showed that the bivalves were present in a narrow (20 cm) band along the rim of the brine pool, suggesting that it is not only tolerant of such extreme conditions but is also limited to them. The bivalve is a member of the Corbulidae and named Apachecorbula muriatica gen. et sp. nov. The shell is atypical of the family in being modioliform and thin. The semi-infaunal habit is seen in ROV images and reflected in the anatomy by the lack of siphons. The ctenidia are large and typical of a suspension feeding bivalve, but the absence of guard cilia and the greatly reduced labial palps suggest that it is non-selective as a response to low food availability. It is proposed that the low body mass observed is a consequence of the extreme habitat and low food availability. It is postulated that the observed morphology of Apachecorbula is a result of paedomorphosis driven by the effects of the extreme environment on growth but is in part mitigated by the absence of high predation pressures.

Description of behavioral patterns of Podocnemis erythrocephala (Spix, 1824) (Testudines: Podocnemididae) (Red-headed river turtle) in captivity, Manaus, Amazonas, Brazil

The biology and ecology of South American turtles is still poorly known, particularly, for the Brazilian species. Laboratory studies are essential to understand the life cycles of aquatic turtles species and to help in formulating management plans for their conservation. As a contribution to the knowledge of Podocnemis erythrocephala species, we give a description of its species-typical behaviors, categorized as: maintenance, locomotion, feeding, agonistic and reproduction, based on captives observations of four pairs of turtles in an aquarium in Manaus, Brazil. Similarities and differences with the repertoires of other turtle species are discussed, concluding that turtles have much more complex adaptative strategies and social life than was believed.

Patterns of Mycobacterium tuberculosis-complex excretion and characterization of super-shedders in naturally-infected wild boar and red deer

Wild boar (Sus scrofa) and red deer (Cervus elaphus) are the main maintenance hosts for bovine tuberculosis (bTB) in continental Europe. Understanding Mycobacterium tuberculosis complex (MTC) excretion routes is crucial to define strategies to control bTB in free-ranging populations, nevertheless available information is scarce. Aiming at filling this gap, four different MTC excretion routes (oronasal, bronchial-alveolar, fecal and urinary) were investigated by molecular methods in naturally infected hunter-harvested wild boar and red deer. In addition MTC concentrations were estimated by the Most Probable Number method. MTC DNA was amplified in all types of excretion routes. MTC DNA was amplified in at least one excretion route from 83.0% (CI95 70.8-90.8) of wild ungulates with bTB-like lesions. Oronasal or bronchial-alveolar shedding were detected with higher frequency than fecal shedding (p < 0.001). The majority of shedders yielded MTC concentrations <10(3) CFU/g or mL. However, from those ungulates from which oronasal, bronchial-alveolar and fecal samples were available, 28.2% of wild boar (CI95 16.6-43.8) and 35.7% of red deer (CI95 16.3-61.2) yielded MTC concentrations >10(3) CFU/g or mL (referred here as super-shedders). Red deer have a significantly higher risk of being super-shedders compared to wild boar (OR = 11.8, CI95 2.3-60.2). The existence of super-shedders among the naturally infected population of wild boar and red deer is thus reported here for the first time and MTC DNA concentrations greater than the minimum infective doses were estimated in excretion samples from both species.

Removal of ochratoxin A from contaminated white and red wines using oenological fining agents

Mycotoxins are toxic secondary metabolites produced by certain moulds, being ochratoxin A (OTA) one of the most relevant. Its chemical structure is a dihydro-isocoumarin connected at the 7-carboxy group to a molecule of L--phenylalanine via an amide bond. OTA contamination of wines might be a risk to consumer health, thus requiring treatments to achieve acceptable standards for human consumption [1]. According to the Regulation No. 1881/2006 of the European Commission, the maximum limit for OTA in wine is 2 µg/kg [2]. Therefore, the aim of this work was to know the effect of different fining agents on OTA removal, as well as their impact on white and red wine physicochemical characteristics. To evaluate their efficiency, 11 commercial fining agents (mineral, synthetic, animal and vegetable proteins) were used to get new approaches on OTA removal from white and red wines. Trials were performed in wines artificially supplemented (at a final concentration of 10 µg/L) with OTA. The most effective fining agent in removing OTA (80%) from white wine was a commercial formulation that contains gelatine, bentonite and activated carbon. Removals between 10-30% were obtained with potassium caseinate, yeast cell walls and pea protein. With bentonites, carboxymethylcellulose, polyvinylpolypyrrolidone and chitosan no considerable OTA removal was verified. In red wine, removals between 6-19% were obtained with egg albumin, yeast cell walls, pea protein, isinglass, gelatine, polyvinylpolypyrrolidone and chitosan. The most effective fining agents in removing OTA from red wine were an activated carbon (66%) followed again by the commercial formulation (55%), being activated carbon a well-known adsorbent of mycotoxins. These results may provide useful information for winemakers, namely for the selection of the most appropriate oenological product for OTA removal, reducing wine toxicity and simultaneously enhancing food safety and wine quality.

Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea

The bottom of the Red Sea harbors over 25 deep hypersaline anoxic basins that are geochemically distinct and characterized by vertical gradients of extreme physicochemical conditions. Because of strong changes in density, particulate and microbial debris get entrapped in the brine-seawater interface (BSI), resulting in increased dissolved organic carbon, reduced dissolved oxygen toward the brines and enhanced microbial activities in the BSI. These features coupled with the deep-sea prevalence of ammonia-oxidizing archaea (AOA) in the global ocean make the BSI a suitable environment for studying the osmotic adaptations and ecology of these important players in the marine nitrogen cycle. Using phylogenomic-based approaches, we show that the local archaeal community of five different BSI habitats (with up to 18.2% salinity) is composed mostly of a single, highly abundant Nitrosopumilus-like phylotype that is phylogenetically distinct from the bathypelagic thaumarchaea; ammonia-oxidizing bacteria were absent. The composite genome of this novel Nitrosopumilus-like subpopulation (RSA3) co-assembled from multiple single-cell amplified genomes (SAGs) from one such BSI habitat further revealed that it shares [sim]54% of its predicted genomic inventory with sequenced Nitrosopumilus species. RSA3 also carries several, albeit variable gene sets that further illuminate the phylogenetic diversity and metabolic plasticity of this genus. Specifically, it encodes for a putative proline-glutamate 'switch' with a potential role in osmotolerance and indirect impact on carbon and energy flows. Metagenomic fragment recruitment analyses against the composite RSA3 genome, Nitrosopumilus maritimus, and SAGs of mesopelagic thaumarchaea also reiterate the divergence of the BSI genotypes from other AOA.

Una estrategia integral y definición de políticas socio habitacionales, a partir de los códigos de valores, derechos y necesidades de la población que habita en Villas de Emergencia de la Ciudad de Córdoba (Red Pictor)

La pobreza y exclusión social en que se encuentran las familias o individuos que habitan en situación de emergencia social y habitacional en la ciudad de Córdoba, generan pautas de apropiación y construcción de hábitat diferentes al resto de la población. El presente proyecto propone elaborar una estrategia integral de desarrollo e inclusión social y urbana, y definir políticas públicas que puedan dar respuesta al problema socio-habitacional de los sectores de villas de emergencia de la ciudad de Córdoba teniendo en cuenta valores y pautas de la población. Bajo este marco contextual, a través del desarrollo del presente proyecto de investigación aplicada, se busca abordar explícitamente el factor socio-habitacional y su incidencia en los procesos de exclusión de sectores de la población que no acceden a los derechos a la ciudad y que llevan a niveles de tensión social y violencia creciente. Cuando nos referimos al “no acceso” a los derechos a la ciudad, nos referimos al no acceso a beneficios básicos de infraestructura, de servicios de salud y educación de calidad, entre otros. En términos específicos, plantea abordar la dificultad que existe para el desarrollo de políticas y proyectos sectoriales socio-habitacionales para el sector de villas de emergencia que tengan en cuenta los valores, potencialidades y recursos de la población y los actores involucrados en dicha problemática, elaborando una estrategia integral para definir políticas públicas.

Valorización de los bienes histórico-arquitectónicos de origen italiano en Argentina. El caso particular de Córdoba. (Proyecto CUIA en Red Internacional)

El presente proyecto de investigación, realizado en red con universidades argentinas y europeas, tiende a considerar los bienes histórico-arquitectónicos de origen italiano en Argentina con la finalidad de promover su valoración y conservación. El subproyecto encarado por la Universidad Católica de Córdoba se centrará en la producción arquitectónica y urbana de la región. Comprende dos fases significativas: la primera de ellas comprende el conocimiento y la valoración de ese patrimonio cultural como parte de nuestra identidad; la segunda tiene la finalidad de realizar un proyecto de conservación y propuesta de adecuación para el uso o propuesta de reutilización –según corresponda- de algunos ejemplos relevantes especialmente seleccionados para tal fin.

Mejoramiento de la eficiencia productiva de caprinos de leche de la zona norte de la provincia de Córdoba por el control de enfermedades infecciosas y parasitarias (Red Pictor)

En el norte de la Provincia de Córdoba, la progresiva intensificación de la producción láctea caprina, debido al fuerte incentivo desde áreas gubernamentales, ha dado como resultado la aparición de algunos problemas sanitarios que generalmente pasan desapercibidos cuando las condiciones productivas se desarrollan en sistemas extensivos y muy rudimentarios. Se comienzan a visualizar problemas sanitarios-productivos inherentes a sistemas de mayor eficiencia y derivados de una mayor carga animal y productividad individual como son las parasitosis por nematodes gastrointestinales y las mastitis. El control químico de ambas afecciones se está llevando a cabo en forma totalmente empírica y con un uso indiscriminado e irracional de antimicrobianos y antiparasitarios, con fracasos terapéuticos, aparición de residuos y sin control de tiempos de retiro. En este contexto, además de las pérdidas productivas, existe un riesgo real de enviar leche al consumo o a la industrialización con concentraciones importantes de antibióticos y/o antiparasitarios. Por todo ello, con este proyecto nos planteamos como objetivos identificar principales especies bacterianas y parasitarias que infectan a nuestros rodeos caprinos; identificar los antimicrobianos y antiparasitarios que se utilizan; realizar los mismos estudios de eficacia, farmacocinética y de resistencia, siendo los beneficiarios directos de estos resultados los productores, el profesional veterinario, los consumidores y la industria láctea.

Efecto de la distribución del diámetro de la fibra sobre el tipo y frecuencia de fibras objetables en vellones mixtos. 1- Aspectos físicos (Programa Red Supprad)

Las fibras pertenecientes a los Camélidos y a los Caprinos reciben entre otros nombres el de fibras lujosas. Los atributos y caracteres que le confieren valor a estas fibras son: suavidad, brillo, escasez o rareza, precio alto, carácter de misterioso, romántico, elegante y exclusivo. Siendo suavidad y brillo o lustrosidad los únicos atributos que solo depende de la fibra cruda en sí. La expresión ´suave´ textilmente hablando se reconoce cómo suavidad al tacto o ´mano´ y reúne en sí mismo varios atributos: confort sobre la piel (picazón), rigidez, lisura, suavidad. El término ´prickle´ o picazón (prurito) se aplica solo para las prendas que se usan en contacto con la piel (directa o indirectamente) y cada vez resulta más importante. Diversos estudios han demostrado que la sensación de picazón o prurito proviene de las fibras gruesas de la cola derecha de la distribución del diámetro de la fibra (´borde grueso´), de ahí la importancia de estudiar esta distribución en el contexto físico primero y en el genético luego. Se hipotetiza que: La distribución del diámetro de la fibra puede ser evaluada correctamente con el desvío estándar y el coeficiente de variación del diámetro, desde el punto de vista cuantitativo y por la morfología (tipo de rizo), desde el punto de vista cualitativo y esta determinación permite predecir la suavidad al tacto del hilo y/o tejido a confeccionar. Para testar esta hipótesis se han formulado los siguientes objetivos generales: Determinar la relación entre la variación o dispersión del diámetro de la fibra y parámetros estadísticos cuantitativos en fibra de Camélidos y Caprinos. Determinar la relación entre la variación o dispersión del diámetro de la fibra y la morfología de la fibra de Camélidos y Caprinos. Determinar la relación entre la variación del diámetro y la morfología de la fibra y la suavidad al tacto del hilo y/o tejido producido Camélidos y Caprinos. El proyecto se desarrollará en el contexto del programa SUPPRAD y se utilizará la información capturada en los trabajos de campo con caprinos criollos, ovinos Merino y Camélidos Sudamericanos, tratando de obtener una respuesta formal a la disyuntiva de homogeneizar la distribución de tipos de fibras y diámetros por vía mecánica (´descerdado´), selección genética, o una combinación de ambas.

Asociatividad y redes interorganizacionales. El caso de la Red Social de la 5ta

A partir de los resultados de las investigaciones realizadas sobre formas asociativas entre micro emprendedores y luego en cooperativas, surgió la inquietud de analizar formas asociativas de mayor envergadura tales como las redes interorganizacionales, que superan la asociatividad entre individuos e incluyen a diversas organizaciones (de la sociedad civil, actores estatales, instituciones educativas, cooperativas, etc.). El objetivo de nuestra investigación es profundizar el estudio de la asociatividad en una de estas redes en la ciudad de Córdoba a través de un proceso de construcción conjunta, con los propios actores, de los problemas de investigación para desde allí reflexionar, comprender y sistematizar las prácticas propias de su funcionamiento asociativo con el objetivo de generar un conocimiento capaz de potenciar su propia dinámica y enriquecer la construcción teórica en torno a estas formas organizacionales. La investigación se propone también abordar las estrategias de incidencia en políticas pública de la red. La red con la que trabajaremos es la Red Social de la 5ta, que incluye entre sus integrantes a una de las cooperativas estudiadas en la investigación anterior y desarrolla su actividad en una de las zonas que concentra la población con mayores indicadores de vulnerabilidad de la ciudad de Córdoba.