A terbenzimidazole that preferentially binds and conformationally alters structurally distinct DNA duplex domains: A potential mechanism for topoisomerase I poisoning

The terbenzimidazoles are a class of synthetic ligands that poison the human topoisomerase I (TOP1) enzyme and promote cancer cell death. It has been proposed that drugs of this class act as TOP1 poisons by binding to the minor groove of the DNA substrate of TOP1 and altering its structure in a manner that results in enzyme-mediated DNA cleavage. To test this hypothesis, we characterize and compare the binding properties of a 5-phenylterbenzimidazole derivative (5PTB) to the d(GA4T4C)2 and d(GT4A4C)2 duplexes. The d(GA4T4C)2 duplex contains an uninterrupted 8-bp A⋅T domain, which, on the basis of x-ray crystallographic data, should induce a highly hydrated “A-tract” conformation. This duplex also exhibits anomalously slow migration in a polyacrylamide gel, a feature characteristic of a noncanonical global conformational state frequently described as “bent.” By contrast, the d(GT4A4C)2 duplex contains two 4-bp A⋅T tracts separated by a TpA dinucleotide step, which should induce a less hydrated “B-like” conformation. This duplex also migrates normally in a polyacrylamide gel, a feature further characteristic of a global, canonical B-form duplex. Our data reveal that, at 20°C, 5PTB exhibits an ≈2.3 kcal/mol greater affinity for the d(GA4T4C)2 duplex than for the d(GT4A4C)2 duplex. Significantly, we find this sequence/conformational binding specificity of 5PTB to be entropic in origin, an observation consistent with a greater degree of drug binding-induced dehydration of the more solvated d(GA4T4C)2 duplex. By contrast with the differential duplex affinity exhibited by 5PTB, netropsin and 4′,6-diamidino-2-phenylindole (DAPI), two AT-specific minor groove binding ligands that are inactive as human TOP1 poisons, bind to both duplexes with similar affinities. The electrophoretic behaviors of the ligand-free and ligand-bound duplexes are consistent with 5PTB-induced bending and/or unwinding of both duplexes, which, for the d(GA4T4C)2 duplex, is synergistic with the endogenous sequence-directed electrophoretic properties of the ligand-free duplex state. By contrast, the binding to either duplex of netropsin or DAPI induces little or no change in the electrophoretic mobilities of the duplexes. Our results demonstrate that the TOP1 poison 5PTB binds differentially to and alters the structures of the two duplexes, in contrast to netropsin and DAPI, which bind with similar affinities to the two duplexes and do not significantly alter their structures. These results are consistent with a mechanism for TOP1 poisoning in which drugs such as 5PTB differentially target conformationally distinct DNA sites and induce structural changes that promote enzyme-mediated DNA cleavage.

Contraction due to microtubule disruption is associated with increased phosphorylation of myosin regulatory light chain.

Microtubules have been proposed to function as rigid struts which oppose cellular contraction. Consistent with this hypothesis, microtubule disruption strengthens the contractile force exerted by many cell types. We have investigated alternative explanation for the mechanical effects of microtubule disruption: that microtubules modulate the mechanochemical activity of myosin by influencing phosphorylation of the myosin regulatory light chain (LC20). We measured the force produced by a population of fibroblasts within a collagen lattice attached to an isometric force transducer. Treatment of cells with nocodazole, an inhibitor of microtubule polymerization, stimulated an isometric contraction that reached its peak level within 30 min and was typically 30-45% of the force increase following maximal stimulation with 30% fetal bovine serum. The contraction following nocodazole treatment was associated with a 2- to 4-fold increase in LC20 phosphorylation. The increases in both force and LC20 phosphorylation, after addition of nocodazole, could be blocked or reversed by stabilizing the microtubules with paclitaxel (former generic name, taxol). Increasing force and LC20 phosphorylation by pretreatment with fetal bovine serum decreased the subsequent additional contraction upon microtubule disruption, a finding that appears inconsistent with a load-shifting mechanism. Our results suggest that phosphorylation of LC20 is a common mechanism for the contractions stimulated both by microtubule poisons and receptor-mediated agonists. The modulation of myosin activity by alterations in microtubule assembly may coordinate the physiological functions of these cytoskeletal components.

Washcoated Pd/Al2O3 monoliths for the liquid phase hydrodechlorination of dioxins

The catalytic activity and durability of 2 wt.% Pd/Al2O3 in powder and washcoated on cordierite monoliths were examined for the liquid phase hydrodechlorination (LPHDC) of polychlorinated dibenzo-p-dioxins/polychlorinated dibenzofurans (PCDD/Fs), also known as dioxins. NaOH was employed as a neutralizing agent, and 2-propanol was used as a hydrogen donor and a solvent. Fresh and spent powder and monolith samples were characterized by elemental analysis, surface area, hydrogen chemisorption, scanning electron microscopy/energy dispersive X-ray spectroscopy (SEM/EDX), and transmission electron microscopy/energy dispersive X-ray spectroscopy (TEM/EDX). Three reactor configurations were compared including the slurry and monolith batch reactors as well as the bubble loop column resulting in 100, 70, and 72% sample toxicity reduction, respectively, after 5 h of reaction. However, the slurry and monolith batch reactors lead to catalyst sample loss via a filtration process (slurry) and washcoat erosion (monolith batch), as well as rapid deactivation of the powder catalyst samples. The monolith employed in the bubble loop column remained stable and active after four reaction runs. Three preemptive regeneration methods were evaluated on spent monolith catalyst including 2-propanol washing, oxidation/reduction, and reduction. All three procedures reactivated the spent catalyst samples, but the combustion methods proved to be more efficient at eliminating the more stable poisons.

Pamphlets - homoeopathic.

Title from spine.

Region 5 hazardous waste and toxic substances.

Mode of access: Internet.

Regulatory analysis proposed premanufacture notification and review procedures : Toxic Substances Control Act, section 5.

"October 1980."

Systems for rapid ranking of environmental pollutants.

Mode of access: Internet.

Acute toxicity of selected toxicants to six species of fish /

Mode of access: Internet.

Supporting innovation : a policy study.

"Contract no. 68-01-5878."

Anleitung zur Ausmittelung der Gifte und zur Erkennung der Blutflecken bei gerichtlich-chemischen Untersuchungen /

Includes bibliographical references.

Impact of TSCA proposed premanufacturing notification requirements /

Mode of access: Internet.

Perspectives on state-EPA grant activities /

Mode of access: Internet.

Federal activities in toxic substances /

Mode of access: Internet.

Sources of toxic compounds in household wastewater /

Mode of access: Internet.