Three-dimensional tomographic reconstruction of an exceptionally well preserved ichnological assemblage from the Stainmore Foundation, Carboniferous, UK

This Ph.D. thesis addresses current issues with ichnotaxonomic practice, and characterizes an exceptionally well preserved ichnological assemblage from the Carboniferous Stainmore Formation, Northumberland, United Kingdom. Samples were collected from closely localized float representative of various units throughout the succession, which was deposited in a storm-dominated marine shoreface. Three dominant ichnotaxa were selected for three-dimensional morphological analysis due to their complicated morphology and/or unclear taxonomic status: 1) Dactyloidites jordii isp. nov.; 2) Beaconites capronus, and; 3) Neoeione moniliformis comb. nov. Using serial grinding and photography, these ichnotaxa were ground and modelled in true colour. High-resolution models of three taxa produced in this study are the basis of the first complete three-dimensional consideration of the traces, and forms the basis for refined palaeobiological and ethological analysis of these taxa. Dactyloidites jordii isp. nov. is a stellate to palmate burrow composed of numerous long, narrow rays that exhibit three orders of branching arranged into tiered galleries radiating from a central shaft. It is considered to be the feeding structure produced by a vermiform organism. Beaconites capronus is a winding trace with distinctly chevron-shaped, meniscate backfill demonstrated herein to backfill the vertical shafts associated with its burrows in a comparable fashion to the horizontal portion of the burrow. This lack of a surface connection would result in the trace making organism being exposed to low-oxygen porewater. Coping with this porewater dysoxia could be approached by burrowing organisms in a number of ways: 1) revisiting the sediment-water interface; 2) creating periodic shafts; or 3) employing anaerobic metabolism. Neoeione moniliformis was originally introduced as Eione moniliformis, however, the genus Eione Tate, 1859 is a junior homonym of Eione Rafinesque, 1814. This led to the transfer of Eione moniliformis to Parataenidium. Through careful examination and three-dimensional characterization of topotypes, the transfer to Parataenidium moniliformis is demonstrated herein to be problematic, as Parataenidium refers to primarily horizontal burrows with two distinct layers and Eione moniliformis is composed of one distinct level. As such, the new ichnogenus Neoeione is created to accommodate Neoeione moniliformis.

Late Holocene diatom abundaces in sediment core HC-11

The study of diatoms in core HC11 collected from the southwestern part of Chukchi Sea, allowed to distinguish 3 diatoms ecological zones, reflecting paleoenvironmental changes during the last 2300 years. The sediment age was based on the sedimentation rates, determined by 210Pb and radiocarbon dating of mollusk shells. The environmental changes of Chukchi Sea revealed by examination of diatoms correlates with global climate changes - the warming of the early and middle Subatlantic and cooling of the late Subatlantic (Little Ice Age). Warming early and middle Subatlantic in the Chukchi Sea was probably stronger than the warming of the late 20th century and was not accompanied by significant changes in sea level.

Phenotypic and Genotypic Characteristics of Members of the Genus Streptobacillus

The genus Streptobacillus (S.) remained monotypic for almost 90 years until two new species were recently described. The type species, S. moniliformis, is one of the two etiological agents of rat bite fever, an under-diagnosed, worldwide occurring zoonosis. In a polyphasic approach field isolates and reference strains of S. moniliformis, S. hongkongensis, S. felis as well as divergent isolates were characterized by comparison of molecular data (n = 29) and from the majority also by their physiological as well as proteomic properties (n = 22). Based on growth-independent physiological profiling using VITEK2-compact, API ZYM and the Micronaut system fastidious growth-related difficulties could be overcome and streptobacilli could definitively be typed despite generally few differences. While differing in their isolation sites and dates, S. moniliformis isolates were found to possess almost identical spectra in matrix-assisted laser desorption ionization-time of flight mass spectrometry and Fourier transform infrared spectroscopy. Spectroscopic methods facilitated differentiation of S. moniliformis, S. hongkongensis and S. felis as well as one divergent isolate. Sequencing of 16S rRNA gene as well as functional genes groEL, recA and gyrB revealed only little intraspecific variability, but generally proved suitable for interspecies discrimination between all three taxa and two groups of divergent isolates.

Growth of native trees in two agroforestry systems.

Agroforestry systems with eucalyptus prevail in Central and Southeast Brazil, and little information is available about systems using native trees. The aim of the present study was to evaluate the development of seven native tree species grown under two agroforestry systems. The experiment was conducted starting in 2007 in 12-hectare area in the municipality of São Carlos, São Paulo state, Brazil. The tree species planted in the two systems (a silvopastoral system and an agrisilvicultural system) were: 'capixingui' (Croton floribundus) and 'mutambo' (Guazuma ulmifolia) (tutors), 'jequitibá-branco' (Cariniana estrellensis), 'canafistula' (Peltophorum dubium) and 'ipê felpudo' (Zeyheria tuberculosa) (timber trees), and 'angico-branco' (Anadenanthera colubrina) and 'pau-jacaré' (Piptadenia gonoacantha) (N-fixing trees). Data were collected for 48 months. The results show differences among tree development, which was evaluated as growth in height and diameter, as well as sensitivity to insect and disease damage. The overall results show that the agrisilvicultural system allowed better tree development. The species with best performance in the two systems were capixingui, mutambo and canafístula. Ipê-felpudo and jequitibá-branco showed the worst results. The high variability among individuals of the same species indicates the possibility of high production advances with selective breeding of these species.