Distribution and abundance of Dungeness crab and crangon shrimp, and dredging-related mortality of invertebrates and fish in Grays Harbor, Washington

The impacts of widening and deepening the existing navigation channel in Grays Harbor on Dungeness crab, crangon shrimp and fish was investigated. The spatial and temporal distribution of these organisms was studied using an otter trawl and ring nets, and the uptake of organisms by dredges was estimated from samples collected on working hopper and pipeline dredges. ... Impacts of the dredging project on crabs, shrimp and fish could be associated with entrainment, food loss and toxicants released from sediments. Scenarios are presented that predict impacts. Suggestions for reducing impacts are given.

Distribution and abundance of humpback whales (Megaptera novaeangliae) and other marine mammals off the northern Washington coast

We examined the summer distribution of marine mammals off the northern Washington coast based on six ship transect surveys conducted between 1995 and 2002, primarily from the NOAA ship McArthur. Additionally, small boat surveys were conducted in the same region between 1989 and 2002 to gather photographic identification data on humpback whales (Megaptera novaeangliae) and killer whales (Orcinus orca) to examine movements and population structure. In the six years of ship survey effort, 706 sightings of 15 marine mammal species were made. Humpback whales were the most common large cetacean species and were seen every year and a total of 232 sightings of 402 animals were recorded during ship surveys. Highest numbers were observed in 2002, when there were 79 sightings of 139 whales. Line-transect estimates for humpback whales indicated that about 100 humpback whales inhabited these waters each year between 1995 and 2000; in 2002, however, the estimate was 562 (CV= 0.21) whales. A total of 191 unique individuals were identified photographically and mark recapture estimates also indicated that the number of animals increased from under 100 to over 200 from 1995 to 2002. There was only limited interchange of humpback whales between this area and feeding areas off Oregon and California. Killer whales were also seen on every ship survey and represented all known ecotypes of the Pacific Northwest, including southern and northern residents, transients, and offshore-type killer whales. Dall’s porpoise (Phocoenoides dalli) were the most frequently sighted small cetacean; abundance was estimated at 181−291 individuals, except for 2002 when we observed dramatically higher numbers (876, CV= 0.30). Northern fur seals (Callorhinus ursinus) and elephant seals (Mirounga angustirostris) were the most common pinnipeds observed. There were clear habitat differences related to distance offshore and water depth for different species.

Demersal groundfish densities in trawlable and untrawlable habitats off Washington: implications for the estimation of habitat bias in trawl surveys

Demersal groundfish densities were estimated by conducting a visual strip-transect survey via manned submersible on the continental shelf off Cape Flattery, Washington. The purpose of this study was to evaluate the statistical sampling power of the submersible survey as a tool to discriminate density differences between trawlable and untrawlable habitats. A geophysical map of the study area was prepared with side-scan sonar imagery, multibeam bathymetry data, and known locations of historical NMFS trawl survey events. Submersible transects were completed at randomly selected dive sites located in each habitat type. Significant differences in density between habitats were observed for lingcod (Ophiodon elongatus), yelloweye rockfish (Sebastes ruberrimus), and tiger rockfish (S. nigrocinctus) individually, and for “all rockfish” and “all flatfish” in the aggregate. Flatfish were more than ten times as abundant in the trawlable habitat samples than in the untrawlable samples, whereas rockfish as a group were over three times as abundant in the untrawlable habitat samples. Guidelines for sample sizes and implications for the estimation of the continental shelf trawl-survey habitat-bias are considered. We demonstrate an approach that can be used to establish sample size guidelines for future work by illustrating the interplay between statistical sampling power and 1) habitat specific-density differences, 2) variance of density differences, and 3) the proportion of untrawlable area in a habitat.

Genetic analysis of juvenile coho salmon (Oncorhynchus kisutch) off Oregon and Washington reveals few Columbia River wild fish

Little is known about the ocean distributions of wild juvenile coho salmon off the Oregon-Washington coast. In this study we report tag recoveries and genetic mixed-stock estimates of juvenile fish caught in coastal waters near the Columbia River plume. To support the genetic estimates, we report an allozyme-frequency baseline for 89 wild and hatchery-reared coho salmon spawning populations, extending from northern California to southern British Columbia. The products of 59 allozyme-encoding loci were examined with starch-gel electrophoresis. Of these, 56 loci were polymorphic, and 29 loci had P0.95 levels of polymorphism. Average heterozygosities within populations ranged from 0.021 to 0.046 and averaged 0.033. Multidimensional scaling of chord genetic distances between samples resolved nine regional groups that were sufficiently distinct for genetic mixed-stock analysis. About 2.9% of the total gene diversity was due to differences among populations within these regions, and 2.6% was due to differences among the nine regions. This allele-frequency data base was used to estimate the stock proportions of 730 juvenile coho salmon in offshore samples collected from central Oregon to northern Washington in June and September-October 1998−2000. Genetic mixed-stock analysis, together with recoveries of tagged or fin-clipped fish, indicates that about one half of the juveniles came from Columbia River hatcheries. Only 22% of the ocean-caught juveniles were wild fish, originating largely from coastal Oregon and Washington rivers (about 20%). Unlike previous studies of tagged juveniles, both tag recoveries and genetic estimates indicate the presence of fish from British Columbia and Puget Sound in southern waters. The most salient feature of genetic mixed stock estimates was the paucity of wild juveniles from natural populations in the Columbia River Basin. This result reflects the large decrease in the abundances of these populations in the last few decades.

Effects of experimental harvest on red sea urchins (Strongylocentrotus franciscanus) in northern Washington

Commercial harvest of red sea urchins began in Washington state in 1971. Harvests peaked in the late 1980s and have since declined substantially in Washington and other areas of the U.S. west coast. We studied effects of experimental harvest on red sea urchins in San Juan Channel (SJC), a marine reserve in northern Washing-ton. We recorded changes in density and size distribution of sea urchin populations resulting from three levels of experimental harvest: 1) annual size-selective harvest (simulating cur-rent commercial urchin harvest regulations), 2) monthly complete (non–size selective) harvest, and 3) no harvest (control) sites. We also examined re-colonization rates of harvested sites. The red sea urchin population in SJC is composed of an accumulation of large, old individuals. Juvenile urchins represent less than 1% of the population. Lower and upper size limits for commercial harvest protect 5% and 45% of the population, respectively. Complete harvest reduced sea urchin densities by 95%. Annual size-selective harvest significantly decreased sea urchin densities by 67% in the first year and by 47% in the second year. Two years of size-selective harvest significantly altered the size distribution of urchins, decreasing the density of legal-size urchins. Recolonization of harvested sites varied seasonally and occurred primarily through immigration of adults. Selective harvest sites were recolonized to 51% and 38% of original densities, respectively, six months after the first and second annual harvests. Yields declined substantially in the second year of size-selective harvest because of the fishing down of the population and because of low recolonization rates of harvested sites. We recommend that managers consider the potential efficacy of marine harvest refuges and reevaluate the existing upper and lower size limits for commercial harvest to improve long-term management of the sea urchin fishery in Washington.

Strong, low frequency (decadal) environmental fluctuations during the 20th century in the North Pacific Ocean, on the Washington coast, and in Puget Sound

At decadal period (10-20 years), dynamic linkage was evident between atmospheric low pressure systems over the North Pacific Ocean and circulation in a Pacific Northwest fjord (Puget Sound). As the Aleutian low pressure center shifts, storms arriving from the North Pacific Ocean deposit varying amounts of precipitation in the mountains draining into the estuarine system; in turn, the fluctuating addition of fresh water changes the density distribution near the fjord basin entrance sill, thereby constraining the fjord's vertical velocity structure. This linkage was examined using time series of 21 environmental parameters from 1899 to 1987. Covariation in the time series was evident because of the strong decadal cycles compared with long-term averages, interannual variability, and seasonal cycles.

Changes in mid-troposphere snow accumulation on Mt. Logan, Yukon, over the last three centuries

EXTRACT (SEE PDF FOR FULL ABSTRACT): A net snow accumulation time series is presented. It is derived from a 102.5 m ice core retrieved from Mt. Logan at an altitude of 5340 m a.s.l. Annual increments are identified using stable isotopes, trace chemistry, and beta activity. ... The resulting time series of nearly 300 years seems to indicate a lower mean accumulation from AD 1700 to the mid-19th century than after that time. The last 100 years of the series correlates significantly with certain instrumental station records at mid-northern latitudes.

roIC基因和MT���因特性及其表达的研究

植物种子萌发、开花结实和衰老等一系列生长发育过程，都受到植物激素的影响。细胞分裂素作为重要的生长调节物质，对其传统生物化学和生理学特性的研究已积累子大量资料。随着分子生物学的发展，对植物激素的研究又进一步从单纯的生物学描述阶段深入到分子水平研究的阶段。尤其是近年来对来自病原微生物植物激素相关基因的研究，为揭示细胞分裂素的作用机理和细胸分裂素的水平调节机制的阐明开辟了新的途径。 根瘤农杆菌T-DNA上ipt、iaaM和iaaH基因和发根农杆菌的rol基因表达产物与植物激素的代谢有关。rolC基因是位于发根农杆菌T-DNA区的12号开放读框，编码细胞分裂素-β-葡萄糖苷酶，水解结合态细胞分裂素为自由态细胞分裂素。ipt基因编码异戊烯基转移酶，是细胞分裂素合成过程中的关键酶。 本文用PCR方法从发根农杆菌（Agrobacterium rhizogenes）1601质粒中扩增 rolC基因，并构建CaMV 35S启动子驱动下的双元表达载体。以农杆菌介导的叶盘法，分别对野生型烟草（Nicotiana tabacum L. cv. W38）和已转入异戊烯基转移酶基因（ipt）的3F1和3F2烟草进行转达化。Southern blot和Northern Dot Blot分析表明，rolC基因已导入烟草植株，并具有转录活性。转基因烟草的形态特征与细胞分裂素过量表达的植株表现出的特征一致。 用ELISA方法测定转基因烟草植株中激素的含量，结果显示，单独转rolC基因烟草和同时转入rolC和ipt两个基因的烟草，细胞分裂素的水平有不同程度的提高。转基因烟草表现多芽、节间缩短、叶色深绿等现象。同时，转基因烟草内部发生生理变化，如总自由氨基酸、脯氨酸在正常情况下较对照减少，气孔延迟关闭。在干旱胁迫下，转基因烟草随水势的降低、总自由氨基酸和脯氨酸的变化与对照不同。转基因烟草在开始干旱阶段较对照的总自由氨基酸和脯氨酸含量低，随着干旱胁迫的加深，植物中自由氨基酸的含量增加，但转基因植物自由氨基酸的含量高峰值出现时间较对照推迟。干旱胁迫48小时后，恢复给水，转基因植物较对照易恢复正常生长状态，表明转细胞分裂素基因植物抗旱能力增强。另外，叶片总蛋白SDS-PAGE电泳分析表明，转基因植物蛋白质含量高于对照，某些蛋白组分所占比例也明显提高。 综上所述，转rolC和ipt基因烟草的形态和生理变化，是细胞分裂素过量表达引起植物体内激素失衡的结果。

眼镜蛇(Naja naja atra)毒膜毒素MT-I的生物学效应研究

从眼镜蛇毒中纯化出膜毒素MT-I,该毒素与磷脂酶A_(2)产生协同溶血效应,使小鸡颈二腹肌等标本产生进行性挛缩,对体外Hut-78细胞有杀伤作用,腹腔注射能引起家猫的心电图异常。

蜂猴(Nycticebus coucang)和树鼩(Tupaia belangeri chinensis)mt DNA 10种限制酶物理图谱

本研究用10种限制性内切酶对蜂猴和树鼩肝脏线粒体DNA进行了分析. 蜂猴线粒体DNA, BglⅠHind Ⅲ、PstⅠ、SalⅠ和XhoⅠ均各只1个切点、EcoRⅠ、BglⅡ和Pvu Ⅱ各有2切点, BamHⅠ和 EcoRⅤ 分别有3个切点. 对于树鼩线粒体 DNA, BglⅡ、Hind Ⅲ、PstⅠ、SalⅠ和 XhoⅠ均只1个切点, BamHⅠBglⅠ和 PvuⅡ 分别有2个切点, EcoRⅠ 有3个切点, EcoRⅤ有4个切点. 根据单酶和双酶解片段的数目和分子量, 建立了蜂猴和树鼩线粒体 DNA 的物理图谱。

12种鳃形目鱼类mt DNA NI4 L- NI4基因的序列变异及其分子系统学

鳃形目鱼类是一类在鱼类乃至脊椎动物进化史上占有很重要地位的古老濒 危鱼类，长期悬而未决的系统演化关系为世人瞩目.采用DNA测序技术首次测定了 包括中国特有鳃形目鱼类在内的12种鳃形目鱼类的mtDNA ND4L和ND4基因(703 by)的序列，并进行了分子系统学分析.从分子系统学的角度得出了如下结论:(1) 鲤属可以归并到鳃属;(2)达氏鳃与中华鳃的亲缘关系最近，很有可能为中华鳃的 一陆封类型;(3)环太平洋地区的鳃科鱼类可能有共同的起源;(4) ND4L和ND4基 因是进行鳃形目鱼类系统演化研究很好的遗传标记.

Optimization of dose of methyltestosterone (MT) hormone for sex reversal in tilapia (Oreochromis niloticus L.)

This paper describes the optimization of dose of methyltestosteronei (MT) hormone for masculinization of tilapia (Oreochromis niloticus). Five treatments (i.e. T1 T2, T2, T4 and T5) with different doses such as 0, 40, 50, 60 and 65 mg of MT hormone were mixed with per kg of feed for each treatment and fed the fry four times a day up to satiation for a period of 30 days. The stocking density was maintained 10 spawn/liter of water. The growth of fry at different treatments was recorded weekly and mortality was recorded daily. At the end of hormone feeding the fry were reared in hapas fixed in ponds for another 70 days and at the 100th day the fish were sexed by the gonad squashing and aceto-carmine staining method. The analysis of growth data did not show any significant variation in length and weight of fish among the different treatments. High mortality of fry ranging 66% to 81.6% was observed in different treatments and highest mortality was observed during the first twelve days of the experiment. The sex ratio analysis showed that T2 (40 mg/kg) and T5 (65 mg/kg) produced 93.33% of sex reversed male and T3 (50 mg/kg) and T4 (60 mg/kg) produced 96.66% sex reversed male, and these ratios were significantly (p<0.05) different from 1:1 male: female sex ratio. The control, T1 (0 mg/kg) contained 43.33% male progeny. From these results it is suggested that either 50 mg/kg or 60 mg/kg of MT with a feeding period of 30 days could be considered as an optimum dose for masculinization of tilapia (O. niloticus).

Effects of exposure to 50 Hz magnetic field of 1 mT on the performance of detour learning task by chicks

In the present study, we examined the effects of exposure to an extremely low-frequency magnetic field of 1 mT intensity on learning and memory in Lohmann brown domestic chicks using detour learning task. These results show that 20 h/day exposure to a low

Aging Affects the Neural Representation of Speed in Macaque Area MT

Human perception of speed declines with age. Much of the decline is probably mediated by changes in the middle temporal (MT) area, an extrastriate area whose neural activity is linked to the perception of speed. In the present study, we used random-dot pa