Identification of mycobacterial lectins from genomic data

Sixty-four sequences containing lectin domains with homologs of known three-dimensional structure were identified through a search of mycobacterial genomes. They appear to belong to the -prism II, the C-type, the Microcystis virdis (MV), and the -trefoil lectin folds. The first three always occur in conjunction with the LysM, the PI-PLC, and the -grasp domains, respectively while mycobacterial -trefoil lectins are unaccompanied by any other domain. Thirty heparin binding hemagglutinins (HBHA), already annotated, have also been included in the study although they have no homologs of known three-dimensional structure. The biological role of HBHA has been well characterized. A comparison between the sequences of the lectin from pathogenic and nonpathogenic mycobacteria provides insights into the carbohydrate binding region of the molecule, but the structure of the molecule is yet to be determined. A reasonable picture of the structural features of other mycobacterial proteins containing one or the other of the four lectin domains can be gleaned through the examination of homologs proteins, although the structure of none of them is available. Their biological role is also yet to be elucidated. The work presented here is among the first steps towards exploring the almost unexplored area of the structural biology of mycobacterial lectins. Proteins 2013. (c) 2012 Wiley Periodicals, Inc.

Algal biofuel: bountiful lipid from Chlorococcum sp proliferating in municipal wastewater

Algae biofuel have emerged as viable renewable energy sources and are the potential alternatives to fossil-based fuels in recent times. Algae have the potential to generate significant quantities of commercially viable biofuel apart from treating wastewater. Three algal species, viz. Chlorococcum sp., Microcystis sp. and Phormidium sp. proliferating in wastewater ponds were isolated and cultured in the laboratory myxotrophically under similar wastewater conditions. Chlorococcum sp. attained a mean biomass productivity of 0.09 g. I(-1)d(-1) with the maximum `biomass density of 1.33 g I-1 and comparatively higher lipid content of 30.55% (w/w) on the ninth day of the culture experiment. Under similar conditions Microcystis sp. and Phormidium sp. attained mean biomass productivities of 0.058 and 0.063 g I-1 d(-1) with a total lipid content of 8.88% and 18.66% respectively. Biochemical composition (carbohydrates, proteins, lipids and phosphates) variations and lipid accumulation studies were performed by comparison of the ratios of carbohydrate to protein; lipid to protein (L/P) and lipid to phosphates using attenuated total reflectance-Fourier transform infrared spectroscopy which showed higher L/P ratio during the stationary phase of algal growth. Composition analysis of fatty acid methyl ester has been performed using gas chromatography and mass spectrometry. Chlorococcum sp. with higher productivity and faster growth rate has higher lipid content with about 67% of saturated fatty acid dominated by palmitate (36.3%) followed by an unsaturate as linoleate (14%) and has proved to be an economical and viable feedstock for biofuel production compared to the other wastewater-grown species.

Assessment Method for Leaf Litters Allelopathic Effect on Cyanobacteria

A new bioassay technique combining leaf disk and softagar over-layer methods was developed to investigate the allelopathic effect of deciduous leaf litters on the growth of cyanobacteria ( Microcystis aeruginosa Kütz.). Bioactive substances exuded from leaf disks caused inhibitory plaques on the agar plate containing cyanobacteria , and the rate of diffusion depended on the specific leaf disk area. Most of the leaf litters collected around reservoirs in Japan showed inhibitory activity to M. aeruginosa , with Rhus trichocarpa Miq., Quercus variabilis Blume and Mallotus japonicus (Thunb.) Muell. Arg. being the strongest among the 22 tested species.(PDF has 4 pages.)

Lago Pellegrini. Caracteristicas limnologicas

Este trabajo trata el estudio biológico del lago Pellegrini y las características limnológicas del ambiente desde el punto de vista pesquero y turístico en el lapso 1980-1998. Se realizaron monitoreos quincenales de calidad de agua y mensuales de plancton, plaguicidas, bacteriológicos, etc. en estaciones de muestreo situadas en el lago propiamente dicho, en el afluente y alrededores. Se analizan los problemas de eutrofización presentes, en la búsqueda de ensayos que disminuyan el deterioro del ecosistema. Los resultados comprueban un proceso de eutrofización natural, agravado por la actividad humana, con florecimientos de algas cianobacterias (Géneros Microcystis y Anabaena) y una disminución de la productividad secundaria y en la población íctica.

An evaluation of the trophic status of the Shen Reservoir by an analysis of phytoplankton composition and water characteristics

In an effort to evaluate the production potential of an artificial impoundment, the phytoplankton of the Shen reservoir was sampled from November 1981 to June 1982 at three stations during three periods of distinct seasonal hydrographic characteristics. The samples were subsampled and quantified. Most of the phytoplankton were identified to the species level. There were in all 53 species comprising Chlorophyceae contributing 36.70% with species of Volvox, Pediastrum, Closterium, Staurodesmus and Ankistrodesmus as dominant species in this group. The Cyanophyceae contributed 30.00% with species of Microcystis, Nostoc , and Oscillatoria as the dominant species. An analysis of temporal and spatial changes in composition and abundance of the various groups showed that these were influenced by water temperature, sampling period and station. Based on the trophic status of the most abundant species, the composition of the phytoplankton is indicative of a tropical reservoir with a moderate productivity for fish culture

Toxic blue-green algae: The "problem" in perspective

The incidence of blue-green algal blooms and surface scum-formation are certainly not new phenomena. Many British and European authors have been faithfully describing the unmistakable symptoms of blue-green algal scums for over 800 years. There is no disputing that blue-green algal toxins are extremely harmful. Three quite separate categories of compound have been separated: neurotoxins; hepatotoxins and lipopolysaccharides. There is a popular association between blue-green algae and eutrophication. Certainly the main nuisance species - of Microcystis, Anabaena and Aphanizomenon are rare in oligotrophic lakes and reservoirs. Several approaches have been proposed for the control of blue-green algae. Distinction is made between methods for discharging algae already present (eg algicides; straw bales; viruses; parasitic fungi and herbivorous ciliates), and methods for averting an anticipated abundance in the future (phosphorous control, artificial circulation etc).

Hypertrophic phytoplankton: an overview

An overview is provided of studies on hypertrophic phytoplankton in order to explore the subject and to suggest uncovered areas of research in this increasingly important theme. The authors restrict themselves to stagnant environments, using a community criterion to define hypertrophic environments. They are defined as those whose yearly average of phytoplankton chlorophyll is equal to or higher than 100 mg per cubic metre of water. The paper deals with species composition, diversity, biomass, primary production, losses and seasonal succession of hypertrophic phytoplankton. Other topics, such as population dynamics and ecophysiological issues, either lack enough information to be considered or are well known, e.g. Microcystis and Oscillatoria ecophysiology.

Characterizing a cyanobacterial bloom in western Lake Erie using satellite imagery and meteorological data

The distribution and intensity of a bloom of the toxic cyanobacterium, Microcystis aeruginosa, in western Lake Erie was characterized using a combination of satellite ocean-color imagery, field data, and meteorological observations. The bloom was first identified by satellite on 14 August 2008 and persisted for more than 2 months. The distribution and intensity of the bloom was estimated using a satellite algorithm that is sensitive to near-surface concentrations of M. aeruginosa. Increases in both area and intensity were most pronounced for wind stress less than 0.05 Pa. Area increased while intensity did not change for wind stresses of 0.05–0.1 Pa, and both decreased for wind stress greater than 0.1 Pa. The recovery in intensity at the surface after strong wind events indicated that high wind stress mixed the bloom through the water column and that it returned to the surface once mixing stopped. This interaction is consistent with the understanding of the buoyancy of these blooms. Cloud cover (reduced light) may have a weak influence on intensity during calm conditions. While water temperature remained greater than 15°C, the bloom intensified if there were calm conditions. For water temperature less than 15°C, the bloom subsided under similar conditions. As a result, wind stress needs to be considered when interpreting satellite imagery of these blooms.

The comparison of inhibitory effects of barley and rice straws to control of algae and aquatic weeds in fish ponds

Bioassays were carried out to consider the relative effect of barley and rice straw extracts on the growth of 12 problematic freshwater algae. The laboratory results demonstrated that growth of Microcystis aeruginosa; Aphanizomenon flos–aquae, Anabaena flos–aquae, Synura petersenii, and Dinobryon sertularia were all inhibited, whereas Oscillatoria tenuis, Asterionella formosa, Spirogyra sp., and Hydrodictyon reticulatum grown were stimulated by the barley straw extract. No significant effect was also found on the growth of Chlorella kessleri, Scenedesmus subspicatus, and Navicula pelliculosa.

滇池铜绿微囊藻(M．aeruginosa zosa Kutz)的分离培养与总DNA提取的改进

利用稀释法结台平板分离培养法将采自滇池水华中的铜绿微囊藻进行了成功的 分离纯化对比纯化培养前后，发现纯化后该藻的生长速度明显加快，密度大为提高，约为纯化前 的5倍用乙醇乙醚混合液剐该藻作预处理后，破坏了其胶质被．再经常规方法提取总DNA，其得 率提高3 4倍

The diversity and abundance of zooplankton in the Lake Victoria and Kyoga basins and their relationship to fish production

Biological diversity of an ecosystem is considered a reliable measure of the state of health of the ecosystem. In Uganda's large lakes, the Victoria and Kyoga, the past three decades have been characterized by profound changes in fish species composition following the introduction of the piscivorous Nile perch (Oguto-Ohwayo 1990). Over 300 haplochromine cichlid species comprising a wide range of trophic groups were lost along with a host of non-cichlid fishes which occupied virtually all available ecological niches and in the lakes (Witte 1992). A second major ecological event has been the gradual nutrient enrichment of the water bodies (eutrophication) from diffuse and point sources, while at the same time pollutants have also gained entrance into the water systems in pace with indusfrial development and human population increases in the lake basins. Eutrophication and pollution have drastically altered the physical and-chemical character of the water medium in which different fauna and flora thrive. In Lake Victoria these alterations have resulted in changes of algal species composition from pristine community dominated by chlorophytes and diatoms (Melosira etc) to one composed largely of blue-green algae or Cyanobacteria (Microcystis, Anabaena, Planktolyngbya etc) (Mugidde 1993, Hecky 1993).

Plankton identified in stomach contents of Oreochromis niloticus (Pisces, Cichlidae) and the water system of Lakes Edward, George, and Kazinga channel - Uganda

The samples were collected from Lake Edward at Rwenshama, Kisenyi and Katwe, and from Lake George at Mahyoro, Kashaka and Kasenyi and in Kazinga Channel at Katunguru. The organisms identified from the water samples obtained irrespective of station or depth were mainly the phytoplankton (diatoms, blue-green algae and green algae). Of the phytoplankton, blue green-algae were the most abundant both in quantity and number of species especially in L. George. In order of importance were Microcystis spp, Planktolyngbya spp and Anabaenopsis spp were the dominant blue greens. Diatoms and green algae were present but less abundant. The estimated proportions of different types of phytoplankton identified in O. niloticus stomach contents indicate that bluegreen algae were the most abundant followed by the diatoms and green algae.

滇池北部湖湾不同底泥性状对微囊藻复苏影响的模拟

滇池北部福保湾主要承接上游昆明市的生活污水及周边工业污水,其污染程度极为严重.本研究在福保湖湾内设置4个采样点,分别采集了不同区域的沉积物,首次模拟研究了微囊藻(Microcystis)在不同沉积物环境中复苏能力差异,结果表明微囊藻在模拟实验中的复苏能力表现出对不同底质的不同适应性,入口湖区的沉积物对微囊藻的复苏有极强的抑制作用.藻类复苏后达到的最大生物量(以叶绿素a计)分别为东岸对照区的4.7%,西岸对照区的6.6%及吹填区的11.9%,其中微囊藻生物量也远低于其它各样点,占东岸对照、吹填区及西岸对照的

金藻吞噬微囊藻产生的无毒变异株与产毒原始株的比较

分别从喂食三株原始产毒铜绿微囊藻Microcystis aeruginosa(AC、DS和PCC 7820)的金藻Poterioochromonassp.培养物中获得三株藻,以Nest PCR方法(引物对CC/CG和CH/CI)确定此三株藻均为微囊藻属藻株。HPLC测试结果显示这三株藻均不产生微囊藻毒素。显示Poterioochromonassp.具有将产毒微囊藻转化为无毒微囊藻的能力。比较产毒原始株与无毒变异株的生理特性发现,变异株的类胡萝卜素/叶绿素比值高于原始株;而光反应曲线结果表明,变异株的PSⅡ

铬离子对藻类生长的影响

利用自然光照条件,在不同铬离子质量浓度下,对5种藻类的生长进行了实验研究。研究结果表明:5种藻类在不同的光波长下,其吸收光谱存在两个最强的吸收区:420～440nm的蓝紫光部分和660nm的红光部分;在不同铬离子质量浓度0～20.63mg·L-1范围内,5种藻类生长受到不同程度的抑制,其耐受性也尽不相同,经过分析和比较后得出5种藻类对铬的耐受性大小顺序为:微囊藻(Microcystis)>水华鱼腥藻(Anabaena flos-aquae)>细长聚球藻(Synechococcus elongatus)>斜