Evidence for a residual postglacial founder effect in a highly dispersive freshwater invertebrate

In the northern hemisphere, glacial periods have had profound and lasting effects on the population genetics of numerous species, with founder effects often persisting for many generations in formerly glaciated regions. We found an unusual example of this in the freshwater bryozoan Cristatella mucedo, which showed regional differences in haplotype diversity with relatively low levels of haplotype diversity in northern Europe compared to central/southern Europe despite previous evidence for frequent dispersal between C. mucedo populations. Such contradictions between high dispersal and low gene flow have now been reported in several other freshwater taxa and may be attributed to persistent founder effects following colonization of sites by a few individuals whose efficient reproduction leads to rapid population growth. Alternatively, selection may determine which genotypes can thrive in northerly locations, or it may be that C. mucedo has undergone cryptic speciation. Future work on adaptive genomic regions is required before we can understand how gene flow, local adaptation, and speciation influence the current distribution patterns of bryozoans and other freshwater invertebrates.

Self-organising neural networks for adaptive control

Self-organizing neural networks have been implemented in a wide range of application areas such as speech processing, image processing, optimization and robotics. Recent variations to the basic model proposed by the authors enable it to order state space using a subset of the input vector and to apply a local adaptation procedure that does not rely on a predefined test duration limit. Both these variations have been incorporated into a new feature map architecture that forms an integral part of an Hybrid Learning System (HLS) based on a genetic-based classifier system. Problems are represented within HLS as objects characterized by environmental features. Objects controlled by the system have preset targets set against a subset of their features. The system's objective is to achieve these targets by evolving a behavioural repertoire that efficiently explores and exploits the problem environment. Feature maps encode two types of knowledge within HLS — long-term memory traces of useful regularities within the environment and the classifier performance data calibrated against an object's feature states and targets. Self-organization of these networks constitutes non-genetic-based (experience-driven) learning within HLS. This paper presents a description of the HLS architecture and an analysis of the modified feature map implementing associative memory. Initial results are presented that demonstrate the behaviour of the system on a simple control task.

Using self-organising feature maps for the control of artificial organisms

Variations on the standard Kohonen feature map can enable an ordering of the map state space by using only a limited subset of the complete input vector. Also it is possible to employ merely a local adaptation procedure to order the map, rather than having to rely on global variables and objectives. Such variations have been included as part of a hybrid learning system (HLS) which has arisen out of a genetic-based classifier system. In the paper a description of the modified feature map is given, which constitutes the HLSs long term memory, and results in the control of a simple maze running task are presented, thereby demonstrating the value of goal related feedback within the overall network.

Adaptive divergence and speciation among sexual and pseudoviviparous populations of Festuca

Pseudovivipary is an environmentally induced flowering abnormality in which vegetative shoots replace seminiferous (sexual) inflorescences. Pseudovivipary is usually retained in transplantation experiments, indicating that the trait is not solely induced by the growing environment. Pseudovivipary is the defining characteristic of Festuca vivipara, and arguably the only feature separating this species from its closest seminiferous relative, Festuca ovina. We performed phylogenetic and population genetic analysis on sympatric F. ovina and F. vivipara samples to establish whether pseudovivipary is an adaptive trait that accurately defines the separation of genetically distinct Festuca species. Chloroplast and nuclear marker-based analyses revealed that variation at a geographical level can exceed that between F. vivipara and F. ovina. We deduced that F. vivipara is a recent species that frequently arises independently within F. ovina populations and has not accumulated significant genetic differentiation from its progenitor. We inferred local gene flow between the species. We identified one amplified fragment length polymorphism marker that may be linked to a pseudovivipary-related region of the genome, and several other markers provide evidence of regional local adaptation in Festuca populations. We conclude that F. vivipara can only be appropriately recognized as a morphologically and ecologically distinct species; it lacks genetic differentiation from its relatives. This is the first report of a ‘failure in normal flowering development’ that repeatedly appears to be adaptive, such that the trait responsible for species recognition constantly reappears on a local basis.

Complex latitudinal variation in the morphology of the kleptoparasitic spider Argyrodes kumadai associated with host use and climatic conditions

We examined complex geographical patterns in the morphology of a kleptoparasitic spider, Argyrodes kumadai, across its distributional range in Japan. To disentangle biotic and abiotic factors underlying morphological variation, latitudinal trends were investigated in two traits, body size and relative leg length, across separate transition zones for host use and voltinism. Statistical analyses revealed complex sawtooth clines. Adult body size dramatically changed at the transition zones for host use and voltinism, and exhibited a latitudinal decline following the converse to Bergmann’s cline under the same host use and voltinism in both sexes. A similar pattern was observed for relative leg length in females but not in males. A genetic basis for a part of observed differences in morphology was supported by a common-garden experiment. Our data suggest that local adaptation to factors other than season length such as resource availability (here associated with host use) obscures underlying responses to latitude.

Analysis of DNA polymorphism in ancient barley herbarium material: validation of the KASP SNP genotyping platform

The availability of crop specimens archived in herbaria and old seed collections represent valuable resources for the analysis of plant genetic diversity and crop domestication. The ability to extract ancient DNA (aDNA) from such samples has recently allowed molecular genetic investigations to be undertaken in ancient materials. While analyses of aDNA initially focused on the use of markers which occur in multiple copies such as the internal transcribed spacer region (ITS) within ribosomal DNA and those requiring amplification of short DNA regions of variable length such as simple sequence repeats (SSRs), emphasis is now moving towards the genotyping of single nucleotide polymorphisms (SNPs), traditionally undertaken in aDNA by Sanger sequencing. Here, using a panel of barley aDNA samples previously surveyed by Sanger sequencing for putative causative SNPs within the flowering-time gene PPD-H1, we assess the utility of the Kompetitive Allele Specific PCR (KASP) genotyping platform for aDNA analysis. We find KASP to out-perform Sanger sequencing in the genotyping of aDNA samples (78% versus 61% success, respectively), as well as being robust to contamination. The small template size (≥46 bp) and one-step, closed-tube amplification/genotyping process make this platform ideally suited to the genotypic analysis of aDNA, a process which is often hampered by template DNA degradation and sample cross-contamination. Such attributes, as well as its flexibility of use and relatively low cost, make KASP particularly relevant to the genetic analysis of aDNA samples. Furthermore, KASP provides a common platform for the genotyping and analysis of corresponding SNPs in ancient, landrace and modern plant materials. The extended haplotype analysis of PPD-H1 undertaken here (allelic variation at which is thought to be important for the spread of domestication and local adaptation) provides further resolution to the previously identified geographic cline of flowering-time allele distribution, illustrating how KASP can be used to aid genetic analyses of aDNA from plant species. We further demonstrate the utility of KASP by genotyping ten additional genetic markers diagnostic for morphological traits in barley, shedding light on the phenotypic traits, alleles and allele combinations present in these unviable ancient specimens, as well as their geographic distributions.

First look at changes in flood hazard in the inter-sectoral impact model intercomparison project ensemble

Climate change due to anthropogenic greenhouse gas emissions is expected to increase the frequency and intensity of precipitation events, which is likely to affect the probability of flooding into the future. In this paper we use river flow simulations from nine global hydrology and land surface models to explore uncertainties in the potential impacts of climate change on flood hazard at global scale. As an indicator of flood hazard we looked at changes in the 30-y return level of 5-d average peak flows under representative concentration pathway RCP8.5 at the end of this century. Not everywhere does climate change result in an increase in flood hazard: decreases in the magnitude and frequency of the 30-y return level of river flow occur at roughly one-third (20-45%) of the global land grid points, particularly in areas where the hydro-graph is dominated by the snowmelt flood peak in spring. In most model experiments, however, an increase in flooding frequency was found in more than half of the grid points. The current 30-y flood peak is projected to occur in more than 1 in 5 y across 5-30% of land grid points. The large-scale patterns of change are remarkably consistent among impact models and even the driving climate models, but at local scale and in individual river basins there can be disagreement even on the sign of change, indicating large modeling uncertainty which needs to be taken into account in local adaptation studies.

Evidence of resilience to past climate change in Southwest Asia: early farming communities and the 9.2 and 8.2 ka events

Climate change is often cited as a major factor in social change. The so-called 8.2 ka event was one of the most pronounced and abrupt Holocene cold and arid events. The 9.2 ka event was similar, albeit of a smaller magnitude. Both events affected the Northern Hemisphere climate and caused cooling and aridification in Southwest Asia. Yet, the impacts of the 8.2 and 9.2 ka events on early farming communities in this region are not well understood. Current hypotheses for an effect of the 8.2 ka event vary from large-scale site abandonment and migration (including the Neolithisation of Europe) to continuation of occupation and local adaptation, while impacts of the 9.2 ka have not previously been systematically studied. In this paper, we present a thorough assessment of available, quality-checked radiocarbon (14C) dates for sites from Southwest Asia covering the time interval between 9500 and 7500 cal BP, which we interpret in combination with archaeological evidence. In this way, the synchronicity between changes observed in the archaeological record and the rapid climate events is tested. It is shown that there is no evidence for a simultaneous and widespread collapse, large-scale site abandonment, or migration at the time of the events. However, there are indications for local adaptation. We conclude that early farming communities were resilient to the abrupt, severe climate changes at 9250 and 8200 cal BP.

Relative effect of litter quality, forest type and their interaction on leaf decomposition in south-east Brazilian forests

Decomposition was studied in a reciprocal litter transplant experiment to examine the effects of forest type, litter quality and their interaction on leaf decomposition in four tropical forests in south-east Brazil. Litterbags were used to measure decomposition of leaves of one tree species from each forest type: Calophyllum brasiliense from restinga forest; Guapira opposita from Atlantic forest; Esenbeckia leiocarpa from semi-deciduous forest; and Copaifera langsdorffii from cerradao. Decomposition rates in rain forests (Atlantic and restinga) were twice as fast as those in seasonal forests (semi-deciduous and cerradao), suggesting that intensity and distribution of precipitation are important predictors of decomposition rates at regional scales. Decomposition rates varied by species, in the following order: E. leiocarpa > C. langsdorffii > G. opposita > C. brasiliense. However, there was no correlation between decomposition rates and chemical litter quality parameters: C:N, C:P, lignin concentration and lignin:N. The interaction between forest type and litter quality was positive mainly because C. langsdorffii decomposed faster than expected in its native forest. This is a potential indication of a decomposer`s adaptation to specific substrates in a tropical forest. These findings suggest that besides climate, interactions between decomposers and plants might play an essential role in decomposition processes and it must be better understood.

Evidence of ecotypic differentiation between populations of the tree species Parapiptadenia rigida due to flooding

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Planejamento paisagístico do Campus Universitário da Faculdade de Ciências Agronômicas, UNESP, Botucatu, S.P

O Planejamento Paisagístico do Campus da Faculdade de Ciências Agronômicas da Universidade Estadual Paulista (UNESP) em Botucatu - SP, foi elaborado a partir de um Plano Diretor já existente e considerado o comportamento da paisagem, com edificações e circulações já estabelecidas, dando ênfase ao projeto de ajardinamento do entorno da Central de Salas de Aulas. Os objetivos principais do planejamento visam a proteção do solo, arborização adequada e ajardinamento do encontro dos prédios principais. O traçado proposto é simples, com a finalidade de dar uma escala humana ao Campus, considerando a necessidade dos usuários e de favorecer a utilização de máquinas para manutenção e tratos culturais, em face da pequena disponibilidade de mão-de-obra, sendo mais elaborado somente nos entornos dos prédios principais. A estrutura vegetal é formada de árvores, arbustos, gramados e outras forrações que foram selecionadas por sua rusticidade, resistência, aclimatação ao local e disponibilidade nos Viveiros Experimentais da Faculdade de Ciências Agronômicas-UNESP. Procurou-se utilizar, sempre que possível, espécies nativas

Information on Brazilian palms for ornamental use

Fully developed specimens of Brazilian species belonging to the palm collection of the FCAV-UNESP, Jaboticabal, state of São Paulo, Brazil, were evaluated with view to their use in landscape projects. Data of interest were taken: maximum plant height, canopy diameter, leaf length, leaf type, trunk height and diameter, trunk type, time of flowering and fruiting, local adaptation, main ornamental values, and limitations to use. The evaluation lead to recommendations for the use of these species for specific situations in landscape planting.

The accumulation process and agrofood networks in Latin America

Includes bibliography

Variação genética e adaptabilidade evolutiva de Rhizoctonia solani AG-1 da soja sob condições de estresse

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Vulnerabilidade de agricultores familiares da cadeia de produção de biodiesel de dendê à extremos de precipitação na comunidade Águas Pretas, Moju (PA)

Os extremos climáticos impactam negativamente o agronegócio brasileiro e ameaçam o desenvolvimento das comunidades rurais que são altamente dos recursos naturais. Por isso é fundamental estudar-se a cadeia produtiva de dendê (Elais guineensis Jacq.) de óleo diante de futuros riscos climáticos, devido o Estado do Pará ser o maior produtor nacional de dendê e a cadeia ser estruturada com a integração da agricultura familiar á cadeia agrícola. O objetivo desta pesquisa foi de analisar as vulnerabilidades dos agricultores familiares da Comunidade Águas Pretas do município de Moju, Estado do Pará, inseridos na cadeia de produção de biodiesel de dendê, diante dos extremos de precipitação. A pesquisa foi desenvolvida em dois momentos: o primeiro analisou os extremos climáticos da série temporal de precipitação de 1981 a 2009 empregando o método descritivo e dos quantis, e o segundo momento analisou a vulnerabilidade dos agricultores através de variáveis/indicadores de desvantagem socioeconômica, tecnológica e de percepção, que representavam situação de vulnerabilidade. Para a identificação de vulnerabilidade dos agricultores foi utilizado a análise fatorial por componentes principais, a elaboração de índices de vulnerabilidade climática e a análise agrupamento, onde foram alocados 22 agricultores em cinco categorias de classificação rédefinidas. Os resultados obtidos mostraram que a ocorrência de extremos muito secos e muito chuvosos na série de dados entre os anos de 1981 a 2009 do município de Moju (PA). O risco climático identificado no município representa grande ameaça à produção de dendê, uma vez que os impactos dos extremos de precipitação sobre a planta vão desde distúrbios nas fases de desenvolvimento até, a redução parcial e total da produção dos cachos de dendê. Estes impactos em longo prazo, afeta diretamente os agricultores familiares que são dependentes da venda exclusiva dos cachos de dendê á agroindústria, assim como compromete aos objetivos de inclusão social e produção de energia renovável do Programa de biodiesel. Os agricultores familiares da comunidade Águas Pretas integrados a cadeia de produção de biodiesel de dendê reagiram de formas distintas, considerando fatores socioeconômico, tecnológico e de percepção, sendo distribuídos em cinco categorias de vulnerabilidade (alta, média alta, média, média baixa e baixa). Os grupos de vulnerabilidade de maior interesse na pesquisa foram de alta e baixa vulnerabilidade, correspondentes a 14% (3 agricultores) e 18% (agricultores), respectivamente, do total de agricultores entrevistados. O grupo de alta vulnerabilidade foi caracterizado por agricultores que utilizaram com baixa eficiência a maior parte das variáveis de desvantagens, indicando dificuldades de competir e adaptar-se, em caso de extremos climáticos. No grupo de baixa vulnerabilidade foi caracterizado por agricultores que usam com eficiência todas as macrovariáveis estudadas, mostrando vantagens socioeconômicas, tecnológicas e de percepção. Este grupo se mostrou mais adaptado em caso de extremos de clima, dentro da cadeia de biodiesel, podendo ser parâmetros para elaborações de estratégias de adaptação local. A percepção do risco e os fatores levantados mostraram-se ser um forte recurso para analisar a situação de vulnerabilidade dos agricultores locais. A percepção do agricultor é orientada segundo suas convicções e experiências diárias, sendo determinantes para elaboração de estratégias adaptativas para enfrentar extremos climáticos.