Temporal and spatial variability of breeding in Australian birds and the potential implications of climate change

Climate change has profound implications for biodiversity worldwide. To understand its effects on Australia's avifauna, we need to evaluate the effects of annual climatic variability and geographical climate gradients. Here, we use national datasets to examine variation in breeding of 16 species of common and widespread Australian landbirds, in relation to four variables: altitude, latitude, year and the Southern Oscillation Index. Analysis of 30 years of nesting records confirmed that breeding was generally later in colder altitudes and latitudes (geographic variation), but was not consistently related to year or the Southern Oscillation Index (temporal variation). However, power to detect expected temporal effects was low. The timing of breeding became significantly earlier with year only in south-eastern Australia. In contrast, an index of breeding activity (the proportion of atlas records for a species for which breeding was reported) increased with increasing winter values of the Southern Oscillation Index (generally wetter conditions) for all 16 species across Australia. This suggests that annual fluctuations in rainfall can have dramatic and immediate effects on breeding, even for largely sedentary, seasonally breeding species. If, as expected, climate change creates drier conditions over much of Australia, we predict a marked negative effect on bird breeding.

Layered dynamic probabilistic networks for spatio-temporal modelling

In applications such as tracking and surveillance in large spatial environments, there is a need for representing dynamic and noisy data and at the same time dealing with them at different levels of detail. In the spatial domain, there has been work dealing with these two issues separately, however, there is no existing common framework for dealing with both of them. In this paper, we propose a new representation framework called the Layered Dynamic Probabilistic Network (LDPN), a special type of Dynamic Probabilistic Network (DPN), capable of handling uncertainty and representing spatial data at various levels of detail. The framework is thus particularly suited to applications in wide-area environments which are characterised by large region size, complex spatial layout and multiple sensors/cameras. For example, a building has three levels: entry/exit to the building, entry/exit between rooms and moving within rooms. To avoid the problem of a relatively large state space associated with a large spatial environment, the LDPN explicitly encodes the hierarchy of connected spatial locations, making it scalable to the size of the environment being modelled. There are three main advantages of the LDPN. First, the reduction in state space makes it suitable for dealing with wide area surveillance involving multiple sensors. Second, it offers a hierarchy of intervals for indexing temporal data. Lastly, the explicit representation of intermediate sub-goals allows for the extension of the framework to easily represent group interactions by allowing coupling between sub-goal layers of different individuals or objects. We describe an adaptation of the likelihood sampling inference scheme for the LDPN, and illustrate its use in a hypothetical surveillance scenario.

Temporal semantic compression for video browsing

We present a video browsing approach, termed Temporal Semantic Compression (TSC), that uses automated measures of interest to support today's foraging behaviours. Conventional browsers 'compress' a video stream using simple 2x or 8x fast-forward. TSC browsers dynamically filter video based on a single user gesture to leave out more or less of the boring bits. We demonstrate a browser with an example interest measure, derived from an automated estimate of movie tempo, to forage in terms of narrative structures such as crises, climaxes, and action sequence book-ends. Media understanding algorithms facilitate browsing, and interactivity enables the human-in-the-loop to cope when those algorithms fail to cross the semantic gap.

Finding the optimal temporal partitioning of video sequences

The existing techniques for shot partitioning either process each shot boundary independently or proceed sequentially. The sequential process assumes the last shot boundary is correctly detected and utilizes the shot length distribution to adapt the threshold for detecting the next boundary. These techniques are only locally optimal and suffer from the strong assumption about the correct detection of the last boundary. Addressing these fundamental issues, in this paper, we aim to find the global optimal shot partitioning by utilizing Bayesian principles to model the probability of a particular video partition being the shot partition. A computationally efficient algorithm based on Dynamic Programming is then formulated. The experimental results on a large movie set show that our algorithm performs consistently better than the best adaptive-thresholding technique commonly used for the task.

Temporal PDMs for gait classification

Gait classification is a developing research area, particularly with regards to biometrics. It aims to use the distinctive spatial and temporal characteristics of human motion to classify differing activities. As a biometric, this extends to recognising different people by the heterogeneous aspects of their gait. This research aims to use a modified deformable model, the temporal PDM, to distinguish the movements of a walking and miming person. The movement of 2D points on the moving form is used to provide input into the model and classify the type of gait present.

Temporal data fusion in multisensor systems using dynamic time warping

Data acquired from multiple sensors can be fused at a variety of levels: the raw data level, the feature level, or the decision level. An additional dimension to the fusion process is temporal fusion, which is fusion of data or information acquired from multiple sensors of different types over a period of time. We propose a technique that can perform such temporal fusion. The core of the system is the fusion processor that uses Dynamic Time Warping (DTW) to perform temporal fusion. We evaluate the performance of the fusion system on two real world datasets: 1) accelerometer data acquired from performing two hand gestures and 2) NOKIA’s benchmark dataset for context recognition. The results of the first experiment show that the system can perform temporal fusion on both raw data and features derived from the raw data. The system can also recognize the same class of multisensor temporal sequences even though they have different lengths e.g. the same human gestures can be performed at different speeds. In addition, the fusion processor can infer decisions from the temporal sequences fast and accurately. The results of the second experiment show that the system can perform fusion on temporal sequences that have large dimensions and are a mix of discrete and continuous variables. The proposed fusion system achieved good classification rates efficiently in both experiments

Comparing shape and temporal PDMs

The Point Distribution Model (PDM) has been successfully used in representing sets of static and moving images. A recent extension to the PDM for moving objects, the temporal PDM, has been proposed. This utilises quantities such as velocity and acceleration to more explicitly consider the characteristics of the movement and the sequencing of the changes in shape that occur. This research aims to compare the two types of model based on a series of arm movements, and to examine the characteristics of both approaches.

Multifaceted role of nitric oxide in an in vitro mouse neuronal injury model: transcriptomic profiling defines the temporal recruitment of death signalling cascades

Nitric oxide is implicated in the pathogenesis of various neuropathologies characterized by oxidative stress. Although nitric oxide has been reported to be involved in the exacerbation of oxidative stress observed in several neuropathologies, existent data fail to provide a holistic description of how nitrergic pathobiology elicits neuronal injury. Here we provide a comprehensive description of mechanisms contributing to nitric oxide induced neuronal injury by global transcriptomic profiling. Microarray analyses were undertaken on RNA from murine primary cortical neurons treated with the nitric oxide generator DETA-NONOate (NOC-18, 0.5 mM) for 8–24 hrs. Biological pathway analysis focused upon 3672 gene probes which demonstrated at least a ±1.5-fold expression in a minimum of one out of three time-points and passed statistical analysis (one-way anova, P < 0.05). Numerous enriched processes potentially determining nitric oxide mediated neuronal injury were identified from the transcriptomic profile: cell death, developmental growth and survival, cell cycle, calcium ion homeostasis, endoplasmic reticulum stress, oxidative stress, mitochondrial homeostasis, ubiquitin-mediated proteolysis, and GSH and nitric oxide metabolism. Our detailed time-course study of nitric oxide induced neuronal injury allowed us to provide the first time a holistic description of the temporal sequence of cellular events contributing to nitrergic injury. These data form a foundation for the development of screening platforms and define targets for intervention in nitric oxide neuropathologies where nitric oxide mediated injury is causative.