Oligomerization and DNA binding of Ler, a master regulator of pathogenicity of enterohemorrhagic and enteropathogenic Escherichia coli

Ler is a DNA-binding, oligomerizable protein that regulates pathogenicity islands in enterohemorrhagic and enteropathogenic Escherichia coli strains. Ler counteracts the transcriptional silencing effect of H-NS, another oligomerizable nucleoid-associated protein. We studied the oligomerization of Ler in the absence and presence of DNA by atomic force microscopy. Ler forms compact particles with a multimodal size distribution corresponding to multiples of 35 units of Ler. DNA wraps around Ler particles that contain more than 1516 Ler monomers. The resulting shortening of the DNA contour length is in agreement with previous measurements of the length of DNA protected by Ler in footprinting assays. We propose that the repetition unit corresponds to the number of monomers per turn of a tight helical Ler oligomer. While the repressor (H-NS) and anti-repressor (Ler) have similar DNA-binding domains, their oligomerization domains are unrelated. We suggest that the different oligomerization behavior of the two proteins explains the opposite results of their interaction with the same or proximal regions of DNA.

Solid-phase synthesis and DNA binding studies of dichloroplatinum(II) conjugates of dicarba analogues of octreotide as a new anticancer drugs

The first dichloroplatinum(II) conjugates of dicarba analogues of octreotide , which is expected to act as a"tumour-targeting device", have been efficiently synthesized following a stepwise solid-phase approach; these compounds emulate the mechanism of cisplatin since they form a 1,2-intrastrand cross-link with two consecutive guanines of an oligonucleotide.

Bases históricas de la psiquiatría catalana moderna

El llibre és una recopil·lació de prop d'una quarantena d'articles publicats en mitjans diversos però amb un objectiu comú, contribuïr a un millor coneixement de la història de la medicina catalana a través, en aquest cas, de la psiquiatria. No és per tant una història general de la psiquiatria catalana.

Monitoring of malaria parasite resistance to chloroquine and sulphadoxine-pyrimethamine in the Solomon Islands by DNA microarray technology.

BACKGROUND: Little information is available on resistance to anti-malarial drugs in the Solomon Islands (SI). The analysis of single nucleotide polymorphisms (SNPs) in drug resistance associated parasite genes is a potential alternative to classical time- and resource-consuming in vivo studies to monitor drug resistance. Mutations in pfmdr1 and pfcrt were shown to indicate chloroquine (CQ) resistance, mutations in pfdhfr and pfdhps indicate sulphadoxine-pyrimethamine (SP) resistance, and mutations in pfATPase6 indicate resistance to artemisinin derivatives. METHODS: The relationship between the rate of treatment failure among 25 symptomatic Plasmodium falciparum-infected patients presenting at the clinic and the pattern of resistance-associated SNPs in P. falciparum infecting 76 asymptomatic individuals from the surrounding population was investigated. The study was conducted in the SI in 2004. Patients presenting at a local clinic with microscopically confirmed P. falciparum malaria were recruited and treated with CQ+SP. Rates of treatment failure were estimated during a 28-day follow-up period. In parallel, a DNA microarray technology was used to analyse mutations associated with CQ, SP, and artemisinin derivative resistance among samples from the asymptomatic community. Mutation and haplotype frequencies were determined, as well as the multiplicity of infection. RESULTS: The in vivo study showed an efficacy of 88% for CQ+SP to treat P. falciparum infections. DNA microarray analyses indicated a low diversity in the parasite population with one major haplotype present in 98.7% of the cases. It was composed of fixed mutations at position 86 in pfmdr1, positions 72, 75, 76, 220, 326 and 356 in pfcrt, and positions 59 and 108 in pfdhfr. No mutation was observed in pfdhps or in pfATPase6. The mean multiplicity of infection was 1.39. CONCLUSION: This work provides the first insight into drug resistance markers of P. falciparum in the SI. The obtained results indicated the presence of a very homogenous P. falciparum population circulating in the community. Although CQ+SP could still clear most infections, seven fixed mutations associated with CQ resistance and two fixed mutations related to SP resistance were observed. Whether the absence of mutations in pfATPase6 indicates the efficacy of artemisinin derivatives remains to be proven.

Inhibitory effect of DNA supercoiling on DNA knotting

Using numerical simulations we investigated the effect of DNA supercoiling on the topological equilibrium of DNA molecules. We showed that under the steady state conditions that maintain the same effective deficit of the linking number in unknotted and knotted DNA molecules the topological equilibrium results in a much smaller fraction of knots than in the case of torsionally relaxed DNA molecules. Based on these results we propose that one of the important functions of DNA supercoiling is to reduce formation of DNA knots.

Recursos web sobre "literatura grisa" (i 2): organismes i bases de dades

Continuació del recull comentat de recursos en línia, d'abast general, relacionats amb la literatura grisa o documentació de difusió restringida, útils per treballar amb ella. Es ressenyen en aquesta segona selecció organismes relacionats amb la literatura grisa (productors i distribuïdors) i productes documentals (bases de dades bibliogràfiques, textuals, etc.).

Mutations in the DNA-binding domain of NR2E3 affect in vivo dimerization and interaction with CRX.

BACKGROUND: NR2E3 (PNR) is an orphan nuclear receptor essential for proper photoreceptor determination and differentiation. In humans, mutations in NR2E3 have been associated with the recessively inherited enhanced short wavelength sensitive (S-) cone syndrome (ESCS) and, more recently, with autosomal dominant retinitis pigmentosa (adRP). NR2E3 acts as a suppressor of the cone generation program in late mitotic retinal progenitor cells. In adult rod photoreceptors, NR2E3 represses cone-specific gene expression and acts in concert with the transcription factors CRX and NRL to activate rod-specific genes. NR2E3 and CRX have been shown to physically interact in vitro through their respective DNA-binding domains (DBD). The DBD also contributes to homo- and heterodimerization of nuclear receptors. METHODOLOGY/PRINCIPAL FINDINGS: We analyzed NR2E3 homodimerization and NR2E3/CRX complex formation in an in vivo situation by Bioluminescence Resonance Energy Transfer (BRET(2)). NR2E3 wild-type protein formed homodimers in transiently transfected HEK293T cells. NR2E3 homodimerization was impaired in presence of disease-causing mutations in the DBD, except for the p.R76Q and p.R104W mutant proteins. Strikingly, the adRP-linked p.G56R mutant protein interacted with CRX with a similar efficiency to that of NR2E3 wild-type and p.R311Q proteins. In contrast, all other NR2E3 DBD-mutant proteins did not interact with CRX. The p.G56R mutant protein was also more effective in abolishing the potentiation of rhodospin gene transactivation by the NR2E3 wild-type protein. In addition, the p.G56R mutant enhanced the transrepression of the M- and S-opsin promoter, while all other NR2E3 DBD-mutants did not. CONCLUSIONS/SIGNIFICANCE: These results suggest different disease mechanisms in adRP- and ESCS-patients carrying NR2E3 mutations. Titration of CRX by the p.G56R mutant protein acting as a repressor in trans may account for the severe clinical phenotype in adRP patients.

La simplificación impositiva en Cuba: Sistemas objetivos de determinación de bases y aglutinación de varios impuestos en uno sólo impuesto

El presente estudio analiza el Impuesto sobre ingresos brutos integrado en el sistema tributario cubano al que están sujetas las sociedades que tributan por el Impuesto sobre Utilidades. Consiste en un sistema que sigue un método de determinación de bases mediante la utilización de índices objetivos referidos a magnitudes físicas, coeficientes o rendimientos de operaciones reales al alcance del sujeto pasivo y de la Administración tributaria

Additional data for nuclear DNA give new insights into the phylogenetic position of Sorex granarius within the Sorex araneus group.

Many species contain genetic lineages that are phylogenetically intermixed with those of other species. In the Sorex araneus group, previous results based on mtDNA and Y chromosome sequence data showed an incongruent position of Sorex granarius within this group. In this study, we explored the relationship between species within the S. araneus group, aiming to resolve the particular position of S. granarius. In this context, we sequenced a total of 2447 base pairs (bp) of X-linked and nuclear genes from 47 individuals of the S. araneus group. The same taxa were also analyzed within a Bayesian framework with nine autosomal microsatellites. These analyses revealed that all markers apart from mtDNA showed similar patterns, suggesting that the problematic position of S. granarius is best explained by an incongruent behavior by mtDNA. Given their close phylogenetic relationship and their close geographic distribution, the most likely explanation for this pattern is past mtDNA introgression from S. araneus race Carlit to S. granarius.

Bacillus subtilis bacteriophage SPP1 hexameric DNA helicase, G40P, interacts with forked DNA.

SPP1-encoded replicative DNA helicase gene 40 product (G40P) is an essential product for phage replication. Hexameric G40P, in the presence of AMP-PNP, preferentially binds unstructured single-stranded (ss)DNA in a sequence-independent manner. The efficiency of ssDNA binding, nucleotide hydrolysis and the unwinding activity of G40P are affected in a different manner by different nucleotide cofactors. Nuclease protection studies suggest that G40P protects the 5' tail of a forked molecule, and the duplex region at the junction against exonuclease attack. G40P does not protect the 3' tail of a forked molecule from exonuclease attack. By using electron microscopy we confirm that the ssDNA transverses the centre of the hexameric ring. Our results show that hexameric G40P DNA helicase encircles the 5' tail, interacts with the duplex DNA at the ss-double-stranded DNA junction and excludes the 3' tail of the forked DNA.

Conversão de bases de dados MicroISIS para Internet

Apresenta o processo desenvolvido pela Companhia de Informática do Paraná (Celepar) na conversão de uma base de dados bibliográfica de recuperação de informações em MicroISIS, para disponibilização por meio da Internet. Relata quais os passos seguidos nesta conversão, desde a decisão pela utilização de banco de dados não relacional, até sua recuperação por intermédio de páginas web. Mostra como foi o processo de conversão do arquivo mestre do MicroISIS para um arquivo seqüencial, possibilitando assim o acesso a este em ambiente mainframe. Apresenta ainda a estrutura do módulo de pesquisa, especialmente com relação às facilidades do sistema.

Acceso a revistas latinoamericanas en Internet: opción a través de las bases de datos Clase y Periódica

La reciente puesta en Internet de las bases de datos bibliográficas Clase y Periódica sirve para realizar un balance y ofrecer una prospectiva sobre su desarrollo. Se hace referencia tanto a sus antecedentes como a sus principales características: cobertura geográfica y temática, número de registros incluidos, selección y obtención de sus fuentes de información, actualización y desfase temporal, grupo de usuarios, así como las formas y facilidades de acceso. Estas bases de datos, producidas en la Universidad Nacional Autónoma de México, han venido ofreciendo, desde hace más de veinte años, información contenida en documentos publicados en cerca de 2 400 revistas científicas y técnicas editadas en América Latina y el Caribe.

Identification and potential origin of invasive clawed frogs Xenopus (Anura: Pipidae) in Sicily based on mitochondrial and nuclear DNA

African clawed frogs of the widespread polytypic species Xenopus laevis Daudin, 1802 (ranging large parts of sub-Saharan Africa) have been spreading since the 1940s, and have established reproductive populations in Europe, Asia and the Americas, where they can have negative impact as competitors of native amphibians and as disease vectors for chytridomycosis or ranaviruses. Here we use two mitochondrial (cytochrome b, 16S rDNA) and one nuclear (RAG 1: Recombination Associated Gene 1) DNA markers to infer the potential origin of invasive clawed frogs from Sicily that represent the largest invasive population in Europe. Identical mtDNA haplotypes match with those of Xenopus laevis, and Sicilian clawed frogs very probably belong to a lineage from the Cape Region of South Africa, most likely originating from a laboratory stock. Nuclear data support this conclusion. Identical mtDNA sequences (cyt b, 16S) of frogs sampled across their range in Sicily suggest the occurrence of a single source population and a potential bottleneck at their release, but faster evolving multilocus nuclear data (microsatellites, SNPs) on the population genetics would be important in the future to better support this hypothesis

Informetria: explorando bases de dados como instrumentos de análise

O artigo aborda os programas de pesquisa do Centro de Estudos Informétricos de Copenhague. Descrevendo a informetria como subcampo da bibliometria, discute uma nova abordagem para a área, qual seja, a combinação de teorias e metodologias avançadas de recuperação da informação com o estudo científico dos fluxos da informação. O Centro objetiva aplicar métodos bibliométricos não somente em estudos cienciométricos e em avaliações da pesquisa científica e tecnológica, mas também na análise de suas relações sociais, econômicas etc., ampliando as análises bibliométricas tradicionais para abranger as comunidades não acadêmicas nas quais a informação é produzida, comunicada e usada. A autora também convoca os profissionais de biblioteconomia e ciência da informação para enfrentarem o desafio dessa nova área de estudos quantitativos, aprendendo a explorar as bases de dados também como um instrumento para desenvolver atividades de análise, enfatizando as possibilidades que esses profissionais têm para elevar o nível de suas posições hierárquicas, assim como para explorar as técnicas informétricas no gerenciamento de políticas e de tomadas de decisão.

Revisió crítica de les bases cronològiques de la Terra Sigillata Hispanica

Un deis principals problemes que existeixen avui en dia en I'estudi de la Terra Sigillata Hispanica és la manca d'una base correcta per a suportar les datacions proposades. Malgrat les discusions que entorn de la cronologia es plantegen actualment, el verdader problcma es troba en la seva base, donat que aquesta s'ha fonamentat sobre excavacions realitzades sense les condicions metodologiques necessaries.