Selected approaches and frameworks to carry out genomic data provision and analysis on the cloud

While High Performance Computing clouds allow researchers to process large amounts of genomic data, complex resource and software configuration tasks must be carried out beforehand. The current trend exposes applications and data as services, simplifying access to clouds. This paper examines commonly used cloud-based genomic analysis services, introduces the approach of exposing data as services and proposes two new solutions (HPCaaS and Uncinus) which aim to automate service development, deployment process and data provision. By comparing and contrasting these solutions, we identify key mechanisms of service creation, execution and data access required to support non-computing specialists employing clouds.

Out of sight but not out of mind: corvids prey extensively on eggs of burrow-nesting penguins

Context Egg depredation is a major cause of reproductive failure among birds and can drive population declines. In this study we investigate predatory behaviour of a corvid (little raven; Corvus mellori) that has only recently emerged, leading to widespread and intense depredation of eggs of a burrow-nesting seabird (little penguin; Eudyptula minor). Aims The main objective of this study was to measure the rate of penguin egg depredation by ravens to determine potential threat severity. We also examined whether penguin burrow characteristics were associated with the risk of egg depredation. Ravens generally employ two modes of predatory behaviour when attacking penguin nests; thus we examined whether burrow characteristics were associated with these modes of attack. Methods Remote-sensing cameras were deployed on penguin burrows to determine egg predation rates. Burrow measurements, including burrow entrance and tunnel characteristics, were measured at the time of camera deployment. Key results Overall, clutches in 61% of monitored burrows (n≤203) were depredated by ravens, the only predator detected by camera traps. Analysis of burrow characteristics revealed two distinct types of burrows, only one of which was associated with egg depredation by ravens. Clutches depredated by ravens had burrows with wider and higher entrances, thinner soil or vegetation layer above the egg chamber, shorter and curved tunnels and greater areas of bare ground and whitewash near entrances. In addition, 86% were covered by bower spinach (Tetragonia implexicoma), through which ravens could excavate. Ravens used two modes to access the eggs: they attacked through the entrance (25% of burrow attacks, n≤124); or dug a hole through the burrow roof (75% of attacks, n≤124). Burrows that were subject to attack through the entrance had significantly shorter tunnels than burrows accessed through the roof. Conclusions The high rates of clutch loss recorded here highlight the need for population viability analysis of penguins to assess the effect of egg predation on population growth rates. Implications The subterranean foraging niche of a corvid described here may have implications for burrow-nesting species worldwide because many corvid populations are increasing, and they exhibit great capacity to adopt new foraging strategies to exploit novel prey. Journal compilation

Rapidly cured out-of-autoclave laminates: understanding and controlling the effect of voids on laminate fracture toughness

Voids are one of the most significant defects found within composites and have been demonstrated to reduce the performance of composite structures. The understanding of the impact of the size and distribution of voids on laminate properties is still limited because voids have proven difficult to deliberately control. This study aims to understand the mechanisms by which voids are generated within out-of-autoclave cured laminates. In this study, a process of prepreg conditioning was developed to control the level of voids within test laminates. Non-conditioned laminates highlighted signs of void growth (1.5%), while conditioned laminates showed consistently low levels of voids (<0.3%). Mass spectrometry indicated higher levels of aqueous and solvent volatiles within the non-conditioned prepreg. Finally, Mode II fracture testing revealed a 21% improvement in toughness for the non-voided laminates. A model on the effect of voids within the Mode II stress state has also been proposed.

Viability of tallow inclusion in Atlantic salmon diet, as assessed by an on-farm grow out trial

The results of a recent increase in research interest directed at the inclusion of tallow in fish feed formulations are suggesting tallow is viable as a potential substitute for other alternative lipid sources such as poultry by-product oil. Although strong growth performance data has been shown, reservations still exist regarding reduced digestibility and the potential impacts this could have on performance over the duration of a grow-out period in low temperature conditions. Also little information is yet available on the potential effect of dietary tallow inclusion on final product quality. A large scale farm based study testing the inclusion of tallow at 40% inclusion, partially replacing poultry by-product oil, in commercial diets of Atlantic salmon over a winter grow-out period in southern Tasmania, Australia was conducted. Tallow inclusion had no impact on growth performance or nutrient digestibility. Tallow resulted in a slight improvement in fillet quality exhibiting a significant reduction in n - 6 PUFA and the n6:n3 ratio, and an increased n - 3LC-PUFA tissue deposition. Consumers were unable to display any preference in liking between 3 salmon products (cold smoked, hot smoked, and cooked) as a result of tallow inclusion. This study demonstrates the viability of partial inclusion of tallow in Atlantic salmon diets over a winter grow-out period. Statement of relevance: Improved knowledge of alternative dietary energy sources (oils and fats) to be used in aquafeed, (replacing the increasingly expensive, and diminishingly available, fish oil) is a key area of research towards improved environmental sustainability and economic viability of the aquaculture sector. Following a promising laboratory based, research scale, in vivo trial aimed at assessing the viability of tallow in salmon feed, a larger and longer duration farm-based trial was implemented to validate initial findings. Consumer test of final products (fresh-cooked, hot smoked and cold smoked fillets) showed no modification of sensorial attributes. Tallow is hereto shown to be a highly viable alternative oil for the salmon aquafeed industry.

Some losses brought out by the WTO agreement for TRIPs

The WTO established two rules concerning the international protection of the TRIPs - trade related intellectual property rights, which includes patents and copyrights. One of these rules is the non-discrimination, which has shown to be efficiency-enhancing in the context of trade tariff reductions. The other is the national-treatment commitment rule. We develop in this paper a simple framework to show that the extended version of this rule - which is nowadays being imposed to members - brings out a loss of economic efficiency and a reduction in the levels of protection of intellectual property rights worldwide. As a consequence, it tends to reduce the investments on Research and Development throughout the world. This exactly contradicts the objectives of the Agreement.

Gestão pública compartilhada: o caso do programa de melhoria do ensino de ciências e matemática - Pró-ciências

This paper is a follow up of the study of the evolution of the public policies for education, especially in the areas of improvement in the science and mathematics program, whose main purpose is to qualify teachers is these disciplines. The evaluation of strategies adopted by the Department of education for the implementation and development of the program in the states, which, on a decentralized bases and through its administrative structure is responsible for contracting higher Education Institutions in charge of preparatory courses. It discusses the enforcement of such a strategy and analyses the combined efforts between the federal sphere, represented by the coordination of preparatory courses for Higher Education Personnel (CAPES) and the Departments of Education, Science and Technology of the states, Research Spowsoring Foundations and the Federal Universities, breaking with some governmental traditions. It analyses the greater degree of interaction between the curriculum for public schools and the developments achieved in the many fields of knowledge. It is based on parameters in the proposals disposed by the law of the methods and fundamentals education, methods of curriculum, and national teaching standards, as well as studies carried out in the states that demand the biggest quantity of qualifying projects, trough analyses that are focused on the problems regarding science teaching in the Brazil and the format adopted in the implementation of the program.

Parcerias público-privadas na presença de seleção adversa: uma análise numérica

Esta dissertação propõe-se a analisar a otimalidade de parcerias público-privadas (PPP) em um ambiente de seleção adversa. Mais especi calmente, analiso se as tarefas de construir e operar uma infraestrutura para serviços públicos deve ser realizada por um consórcio ou se devem ser realizadas por fi rmas contratadas separadamente. Para tal, diferentemente da literatura existente para o problema, focadas nos problemas de contratos incompletos e moral hazard, construo um modelo de seleção adversa multidimensional, onde as firrmas possuem informação privada e podem exercer um esforço não observável em cada atividade, com a existência de externalidade entre as tarefas, em uma extensão do modelo de La¤ont e Tirole (1986). Após defi nir algumas condições sob as quais PPP domina os meios usuais de contratação, utilizo de uma análise numérica para melhor compreender a solução do modelo, que se mostra altamente dependente da correlação entre os parâmetros de informação privada das firmas.

A generalization of judds method of out-steady-state comparisons in perfect foresight models

We show that Judd (1982)’s method can be applied to any finite system, contrary to what he claimed in 1987. An example shows how to employ the technic to study monetary models in presence of capital accumulation.