Multiagent framework for bio-data mining

This paper proposes to apply multiagent based data mining technologies to biological data analysis. The rationale is justified from multiple perspectives with an emphasis on biological context. Followed by that, an initial multiagent based bio-data mining framework is presented. Based on the framework, we developed a prototype system to demonstrate how it helps the biologists to perform a comprehensive mining task for answering biological questions. The system offers a new way to reuse biological datasets and available data mining algorithms with ease.

A triple-random ensemble classification method for mining multi-label data

This paper presents a triple-random ensemble learning method for handling multi-label classification problems. The proposed method integrates and develops the concepts of random subspace, bagging and random k-label sets ensemble learning methods to form an approach to classify multi-label data. It applies the random subspace method to feature space, label space as well as instance space. The devised subsets selection procedure is executed iteratively. Each multi-label classifier is trained using the randomly selected subsets. At the end of the iteration, optimal parameters are selected and the ensemble MLC classifiers are constructed. The proposed method is implemented and its performance compared against that of popular multi-label classification methods. The experimental results reveal that the proposed method outperforms the examined counterparts in most occasions when tested on six small to larger multi-label datasets from different domains. This demonstrates that the developed method possesses general applicability for various multi-label classification problems.

Strategic people management of coal mining firms in Central Queensland

Purpose – This paper aims to propose a conceptual framework to explore the link between strategic human resource management (SHRM) and firm performance of the coal mining companies in Central Queensland (CQ), Australia.

Design/methodology/approach – The paper reviews literature relating to the process and issues of transforming human resource practices and industrial relations of the coal industry in Australia for the past decade. Theoretical development and empirical studies on the SHRM-performance linkage are discussed. Based on the literature review, the paper develops an integrated model for testing the relationship between SHRM and firm performance in the context of CQ's coalmines and proposes a number of research propositions.

Findings – Three perceivable outcomes are likely derived from application of this framework in the field. First, a testing of the linkage between strategic HRM and firm performance in the coal industry, using an integrated approach, would complement the empirical deficiency of treatments on the prior SHRM models. Second, data at firm level could be collected to develop a better understanding of how the adoption of strategic HRM practices in coal companies can affect firm performance. Third, the extent of flexibility practices, use of contractors and associated management practices could be identified.

Originality/value – The coal industry is central to economic development of regional Queensland. The industry contributes substantially to GDP via employment, investment and product export. An exploration of the impact of SHRM on the coal industry will likely result in identifying some best practices that could be potentially adopted in the wider business community to foster regional economic development in Australia and worldwide.

Mining multi-modal crime patterns at different levels of granularity using hierarchical clustering

The appearance of patterns could be found in different modalities of a domain, where the different modalities refer to the data sources that constitute different aspects of a domain. Particularly, the domain of our discussion refers to crime and the different modalities refer to the different data sources such as offender data, weapon data, etc. in crime domain. In addition, patterns also exist in different levels of granularity for each modality. In order to have a thorough understanding a domain, it is important to reveal the hidden patterns through the data explorations at different levels of granularity and for each modality. Therefore, this paper presents a new model for identifying patterns that exist in different levels of granularity for different modes of crime data. A hierarchical clustering approach - growing self organising maps (GSOM) has been deployed. Furthermore, the model is enhanced with experiments that exhibit the significance of exploring data at different granularities.

Knowledge discovery in data streams

Knowing what to do with the massive amount of data collected has always been an ongoing issue for many organizations. While data mining has been touted to be the solution, it has failed to deliver the impact despite its successes in many areas. One reason is that data mining algorithms were not designed for the real world, i.e., they usually assume a static view of the data and a stable execution environment where resources are abundant. The reality however is that data are constantly changing and the execution environment is dynamic. Hence, it becomes difficult for data mining to truly deliver timely and relevant results. Recently, the processing of stream data has received many attention. What is interesting is that the methodology to design stream-based algorithms may well be the solution to the above problem. In this entry, we discuss this issue and present an overview of recent works.

A hermeneutic study of pattern mining as a knowledge creation process : exploring multimedia design practices

In this paper, we discuss a special case of knowledge creation via pattern mining that was studied using a hermeneutic approach. The reported study explores the nature of knowledge creation by domain practitioners who do not communicate directly. The focus of this paper extends the traditional view of a knowledge creation process beyond organisational boundaries. The proposed knowledge creation framework explains the facilitated process of knowledge creation by its qualification, combination, socialisation, externalisation, internalisation and introspection, thus allowing the transformation of individual experience and knowledge into formalised shareable domain knowledge.

Advanced graph mining methods for protein analysis

As one of the primary substances in a living organism, protein defines the character of each cell by interacting with the cellular environment to promote the cell’s growth and function [1]. Previous studies on proteomics indicate that the functions of different proteins could be assigned based upon protein structures [2,3]. The knowledge on protein structures gives us an overview of protein fold space and is helpful for the understanding of the evolutionary principles behind structure. By observing the architectures and topologies of the protein families, biological processes can be investigated more directly with much higher resolution and finer detail. For this reason, the analysis of protein, its structure and the interaction with the other materials is emerging as an important problem in bioinformatics. However, the determination of protein structures is experimentally expensive and time consuming, this makes scientists largely dependent on sequence rather than more general structure to infer the function of the protein at the present time. For this reason, data mining technology is introduced into this area to provide more efficient data processing and knowledge discovery approaches.

Unlike many data mining applications which lack available data, the protein structure determination problem and its interaction study, on the contrary, could utilize a vast amount of biologically relevant information on protein and its interaction, such as the protein data bank (PDB) [4], the structural classification of proteins (SCOP) databases [5], CATH databases [6], UniProt [7], and others. The difficulty of predicting protein structures, specially its 3D structures, and the interactions between proteins as shown in Figure 6.1, lies in the computational complexity of the data. Although a large number of approaches have been developed to determine the protein structures such as ab initio modelling [8], homology modelling [9] and threading [10], more efficient and reliable methods are still greatly needed.

In this chapter, we will introduce a state-of-the-art data mining technique, graph mining, which is good at defining and discovering interesting structural patterns in graphical data sets, and take advantage of its expressive power to study protein structures, including protein structure prediction and comparison, and protein-protein interaction (PPI). The current graph pattern mining methods will be described, and typical algorithms will be presented, together with their applications in the protein structure analysis.

The rest of the chapter is organized as follows: Section 6.2 will give a brief introduction of the fundamental knowledge of protein, the publicly accessible protein data resources and the current research status of protein analysis; in Section 6.3, we will pay attention to one of the state-of-the-art data mining methods, graph mining; then Section 6.4 surveys several existing work for protein structure analysis using advanced graph mining methods in the recent decade; finally, in Section 6.5, a conclusion with potential further work will be summarized.

Mining characteristic relations bind to RNA secondary structures

The identification of RNA secondary structures has been among the most exciting recent developments in biology and medical science. It has been recognized that there is an abundance of functional structures with frameshifting, regulation of translation, and splicing functions. However, the inherent signal for secondary structures is weak and generally not straightforward due to complex interleaving substrings. This makes it difficult to explore their potential functions from various structure data. Our approach, based on a collection of predicted RNA secondary structures, allows us to efficiently capture interesting characteristic relations in RNA and bring out the top-ranked rules for specified association groups. Our results not only point to a number of interesting associations and include a brief biological interpretation to them. It assists biologists in sorting out the most significant characteristic structure patterns and predicting structurefunction relationships in RNA.

A visual mining system for theme development evolution analysis of scientific literature

Theme development evolution analysis of literature is a significant tool to help the scientific scholars find and study the frontier problems more efficiently. This paper designs and develops a visual mining system for theme development evolution analysis to deal with the large number of literature information. The analysis of related themes based on sub-themes, together with the dynamic threshold strategy are adopted for improving the accuracy of system. Experiments results prove that correlations of themes obtained from the system are accurate and achieve better practical effect in comparison with that of our early work.

Study on student score based on data mining

Education is a complex systematic engineering, which is the guarantee of training high-quality talent, helping society make full use of educational outcomes and promote the healthy development of education. In the education, the students' score is a very important quantitative evaluation indicator, which can objectively reflect the effects of educational system and is an important basis to make lots of scientific decisions. This paper uses clustering algorithm and decision tree to comprehensively analyze the students' score, and obtains useful results. It can be observed that the results are valuable for the teaching and management.

Prediction of wool knitwear pilling propensity using data mining techniques

This thesis examined the application of data mining techniques to the issue of predicting pilling propensity of wool knitwear. Using real industrial data, a pilling propensity prediction tool with embedded trained support vector machines is developed to provide high accuracy prediction to wool knitwear even before the yarn is spun!